data_PRDCC_000351
# 
_chem_comp.id                                    PRD_000351 
_chem_comp.name                                  SUCCINYL-ALA-ALA-PRO-ARG 
_chem_comp.formula                               "C21 H36 N7 O8" 
_chem_comp.formula_weight                        514.553 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_000351 C1  C1  C 0 1 N N N ?      ?      ?      10.596 -1.278 -0.258 SIN 1 C1   polymer 1 1 1  ? ? ? 
PRD_000351 O1  O1  O 0 1 N N N ?      ?      ?      10.813 -0.447 0.591  SIN 1 O1   polymer 1 1 2  ? ? ? 
PRD_000351 O2  O2  O 0 1 N Y N ?      ?      ?      11.617 -1.939 -0.828 SIN 1 O2   polymer 1 1 3  ? ? ? 
PRD_000351 C2  C2  C 0 1 N N N ?      ?      ?      9.179  -1.579 -0.674 SIN 1 C2   polymer 1 1 4  ? ? ? 
PRD_000351 C3  C3  C 0 1 N N N ?      ?      ?      8.216  -0.700 0.126  SIN 1 C3   polymer 1 1 5  ? ? ? 
PRD_000351 C4  C4  C 0 1 N N N 7.074  74.549 11.053 6.799  -1.001 -0.289 SIN 1 C4   polymer 1 1 6  ? ? ? 
PRD_000351 O3  O3  O 0 1 N N N 7.350  73.400 11.376 6.581  -1.835 -1.142 SIN 1 O3   polymer 1 1 7  ? ? ? 
PRD_000351 N1  N1  N 0 1 N N N 7.991  75.427 10.675 5.774  -0.342 0.287  ALA 2 N    polymer 1 1 8  ? ? ? 
PRD_000351 C5  C5  C 0 1 N N S 9.357  74.979 10.409 4.396  -0.634 -0.118 ALA 2 CA   polymer 1 1 9  ? ? ? 
PRD_000351 C6  C6  C 0 1 N N N 9.997  74.538 11.714 3.526  0.565  0.160  ALA 2 C    polymer 1 1 10 ? ? ? 
PRD_000351 O4  O4  O 0 1 N N N 9.877  75.207 12.751 4.009  1.565  0.648  ALA 2 O    polymer 1 1 11 ? ? ? 
PRD_000351 C7  C7  C 0 1 N N N 10.181 76.076 9.753  3.876  -1.836 0.674  ALA 2 CB   polymer 1 1 12 ? ? ? 
PRD_000351 N2  N2  N 0 1 N N N 10.670 73.411 11.697 2.211  0.526  -0.133 ALA 3 N    polymer 1 1 13 ? ? ? 
PRD_000351 C8  C8  C 0 1 N N S 11.302 72.846 12.879 1.366  1.691  0.137  ALA 3 CA   polymer 1 1 14 ? ? ? 
PRD_000351 C9  C9  C 0 1 N N N 12.531 72.048 12.440 -0.062 1.245  0.319  ALA 3 C    polymer 1 1 15 ? ? ? 
PRD_000351 O5  O5  O 0 1 N N N 12.543 71.405 11.373 -0.445 0.215  -0.194 ALA 3 O    polymer 1 1 16 ? ? ? 
PRD_000351 C10 C10 C 0 1 N N N 10.328 71.932 13.605 1.450  2.666  -1.039 ALA 3 CB   polymer 1 1 17 ? ? ? 
PRD_000351 N3  N3  N 0 1 N N N 13.552 72.032 13.278 -0.913 1.990  1.051  PRO 4 N    polymer 1 1 18 ? ? ? 
PRD_000351 C11 C11 C 0 1 N N S 14.706 71.174 13.007 -2.298 1.627  1.388  PRO 4 CA   polymer 1 1 19 ? ? ? 
PRD_000351 C12 C12 C 0 1 N N N 14.306 69.703 12.997 -3.099 1.437  0.126  PRO 4 C    polymer 1 1 20 ? ? ? 
PRD_000351 O6  O6  O 0 1 N N N 13.381 69.294 13.732 -2.572 1.588  -0.956 PRO 4 O    polymer 1 1 21 ? ? ? 
PRD_000351 C13 C13 C 0 1 N N N 15.669 71.522 14.165 -2.888 2.790  2.214  PRO 4 CB   polymer 1 1 22 ? ? ? 
PRD_000351 C14 C14 C 0 1 N N N 15.196 72.799 14.713 -1.989 3.990  1.817  PRO 4 CG   polymer 1 1 23 ? ? ? 
PRD_000351 C15 C15 C 0 1 N N N 13.717 72.802 14.522 -0.608 3.301  1.652  PRO 4 CD   polymer 1 1 24 ? ? ? 
PRD_000351 N4  N4  N 0 1 N N N 14.990 68.907 12.209 -4.402 1.099  0.199  ARG 5 N    polymer 1 1 25 ? ? ? 
PRD_000351 C16 C16 C 0 1 N N S 14.755 67.462 12.099 -5.181 0.914  -1.027 ARG 5 CA   polymer 1 1 26 ? ? ? 
PRD_000351 C17 C17 C 0 1 N N N 15.931 66.645 12.604 -5.702 2.248  -1.497 ARG 5 C    polymer 1 1 27 ? ? ? 
PRD_000351 O7  O7  O 0 1 N N N 15.754 65.548 13.139 -5.449 3.250  -0.872 ARG 5 O    polymer 1 1 28 ? ? ? 
PRD_000351 C18 C18 C 0 1 N N N 14.503 67.087 10.665 -6.357 -0.024 -0.748 ARG 5 CB   polymer 1 1 29 ? ? ? 
PRD_000351 C19 C19 C 0 1 N N N 13.164 67.567 10.168 -5.827 -1.414 -0.391 ARG 5 CG   polymer 1 1 30 ? ? ? 
PRD_000351 C20 C20 C 0 1 N N N 13.012 67.265 8.737  -7.003 -2.352 -0.112 ARG 5 CD   polymer 1 1 31 ? ? ? 
PRD_000351 N5  N5  N 0 1 N N N 11.705 67.667 8.248  -6.496 -3.683 0.229  ARG 5 NE   polymer 1 1 32 ? ? ? 
PRD_000351 C21 C21 C 0 1 N N N 11.281 67.441 7.030  -7.370 -4.694 0.521  ARG 5 CZ   polymer 1 1 33 ? ? ? 
PRD_000351 N6  N6  N 0 1 N N N 12.058 66.855 6.146  -8.683 -4.468 0.494  ARG 5 NH1  polymer 1 1 34 ? ? ? 
PRD_000351 N7  N7  N 1 1 N N N 10.098 67.859 6.646  -6.909 -5.905 0.831  ARG 5 NH2  polymer 1 1 35 ? ? ? 
PRD_000351 O8  O8  O 0 1 N Y N ?      ?      ?      -6.448 2.322  -2.611 ARG 5 OXT  polymer 1 1 36 ? ? ? 
PRD_000351 H1  H1  H 0 1 N Y N ?      ?      ?      12.508 -1.714 -0.526 SIN 1 HO2  polymer 1 1 37 ? ? ? 
PRD_000351 H2  H2  H 0 1 N N N ?      ?      ?      9.061  -1.372 -1.738 SIN 1 H21  polymer 1 1 38 ? ? ? 
PRD_000351 H3  H3  H 0 1 N N N ?      ?      ?      8.959  -2.629 -0.481 SIN 1 H22  polymer 1 1 39 ? ? ? 
PRD_000351 H4  H4  H 0 1 N N N ?      ?      ?      8.334  -0.907 1.190  SIN 1 H31  polymer 1 1 40 ? ? ? 
PRD_000351 H5  H5  H 0 1 N N N ?      ?      ?      8.436  0.350  -0.066 SIN 1 H32  polymer 1 1 41 ? ? ? 
PRD_000351 H6  H6  H 0 1 N N N 7.750  76.392 10.572 5.948  0.326  0.968  ALA 2 H    polymer 1 1 42 ? ? ? 
PRD_000351 H7  H7  H 0 1 N N N 9.327  74.115 9.729  4.371  -0.862 -1.183 ALA 2 HA   polymer 1 1 43 ? ? ? 
PRD_000351 H8  H8  H 0 1 N N N 11.201 75.708 9.567  2.851  -2.053 0.373  ALA 2 HB1  polymer 1 1 44 ? ? ? 
PRD_000351 H9  H9  H 0 1 N N N 9.715  76.364 8.799  4.505  -2.703 0.473  ALA 2 HB2  polymer 1 1 45 ? ? ? 
PRD_000351 H10 H10 H 0 1 N N N 10.223 76.951 10.419 3.902  -1.607 1.739  ALA 2 HB3  polymer 1 1 46 ? ? ? 
PRD_000351 H11 H11 H 0 1 N N N 10.752 72.918 10.831 1.825  -0.274 -0.523 ALA 3 H    polymer 1 1 47 ? ? ? 
PRD_000351 H12 H12 H 0 1 N N N 11.619 73.650 13.559 1.710  2.187  1.045  ALA 3 HA   polymer 1 1 48 ? ? ? 
PRD_000351 H13 H13 H 0 1 N N N 10.815 71.510 14.496 1.024  2.200  -1.928 ALA 3 HB1  polymer 1 1 49 ? ? ? 
PRD_000351 H14 H14 H 0 1 N N N 9.442  72.508 13.910 0.892  3.572  -0.801 ALA 3 HB2  polymer 1 1 50 ? ? ? 
PRD_000351 H15 H15 H 0 1 N N N 10.022 71.116 12.934 2.493  2.920  -1.227 ALA 3 HB3  polymer 1 1 51 ? ? ? 
PRD_000351 H16 H16 H 0 1 N N N 15.172 71.441 12.047 -2.308 0.709  1.975  PRO 4 HA   polymer 1 1 52 ? ? ? 
PRD_000351 H17 H17 H 0 1 N N N 15.637 70.739 14.937 -3.925 2.975  1.933  PRO 4 HB2  polymer 1 1 53 ? ? ? 
PRD_000351 H18 H18 H 0 1 N N N 16.698 71.625 13.789 -2.807 2.584  3.281  PRO 4 HB3  polymer 1 1 54 ? ? ? 
PRD_000351 H19 H19 H 0 1 N N N 15.444 72.872 15.782 -2.322 4.434  0.878  PRO 4 HG2  polymer 1 1 55 ? ? ? 
PRD_000351 H20 H20 H 0 1 N N N 15.653 73.641 14.172 -1.959 4.736  2.611  PRO 4 HG3  polymer 1 1 56 ? ? ? 
PRD_000351 H21 H21 H 0 1 N N N 13.333 73.827 14.409 -0.129 3.171  2.622  PRO 4 HD2  polymer 1 1 57 ? ? ? 
PRD_000351 H22 H22 H 0 1 N N N 13.207 72.311 15.364 0.029  3.884  0.988  PRO 4 HD3  polymer 1 1 58 ? ? ? 
PRD_000351 H23 H23 H 0 1 N N N 15.715 69.309 11.650 -4.823 0.978  1.065  ARG 5 H    polymer 1 1 59 ? ? ? 
PRD_000351 H24 H24 H 0 1 N N N 13.867 67.196 12.692 -4.545 0.480  -1.799 ARG 5 HA   polymer 1 1 60 ? ? ? 
PRD_000351 H25 H25 H 0 1 N N N 15.291 67.533 10.040 -6.943 0.366  0.084  ARG 5 HB2  polymer 1 1 61 ? ? ? 
PRD_000351 H26 H26 H 0 1 N N N 14.540 65.991 10.576 -6.987 -0.091 -1.635 ARG 5 HB3  polymer 1 1 62 ? ? ? 
PRD_000351 H27 H27 H 0 1 N N N 12.366 67.063 10.732 -5.241 -1.804 -1.224 ARG 5 HG2  polymer 1 1 63 ? ? ? 
PRD_000351 H28 H28 H 0 1 N N N 13.089 68.654 10.319 -5.198 -1.346 0.496  ARG 5 HG3  polymer 1 1 64 ? ? ? 
PRD_000351 H29 H29 H 0 1 N N N 13.787 67.804 8.173  -7.589 -1.962 0.720  ARG 5 HD2  polymer 1 1 65 ? ? ? 
PRD_000351 H30 H30 H 0 1 N N N 13.134 66.182 8.584  -7.633 -2.419 -0.999 ARG 5 HD3  polymer 1 1 66 ? ? ? 
PRD_000351 H31 H31 H 0 1 N N N 11.093 68.144 8.878  -5.540 -3.848 0.249  ARG 5 HE   polymer 1 1 67 ? ? ? 
PRD_000351 H32 H32 H 0 0 N N N 11.743 66.736 5.204  -9.019 -3.587 0.268  ARG 5 HH11 polymer 1 1 68 ? ? ? 
PRD_000351 H33 H33 H 0 0 N N N 12.964 66.528 6.415  -9.302 -5.185 0.700  ARG 5 HH12 polymer 1 1 69 ? ? ? 
PRD_000351 H34 H34 H 0 0 N N N 9.805  67.729 5.699  -5.953 -6.069 0.850  ARG 5 HH21 polymer 1 1 70 ? ? ? 
PRD_000351 H35 H35 H 0 0 N N N 9.489  68.308 7.301  -7.529 -6.622 1.037  ARG 5 HH22 polymer 1 1 71 ? ? ? 
PRD_000351 H36 H36 H 0 1 N Y N ?      ?      ?      -6.760 3.199  -2.872 ARG 5 HXT  polymer 1 1 72 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_000351 C1  O1  DOUB N N 1  
PRD_000351 C1  O2  SING N N 2  
PRD_000351 C1  C2  SING N N 3  
PRD_000351 O2  H1  SING N N 4  
PRD_000351 C2  C3  SING N N 5  
PRD_000351 C2  H2  SING N N 6  
PRD_000351 C2  H3  SING N N 7  
PRD_000351 C3  C4  SING N N 8  
PRD_000351 C3  H4  SING N N 9  
PRD_000351 C3  H5  SING N N 10 
PRD_000351 C4  O3  DOUB N N 11 
PRD_000351 N1  C5  SING N N 12 
PRD_000351 N1  H6  SING N N 13 
PRD_000351 C5  C6  SING N N 14 
PRD_000351 C5  C7  SING N N 15 
PRD_000351 C5  H7  SING N N 16 
PRD_000351 C6  O4  DOUB N N 17 
PRD_000351 C7  H8  SING N N 18 
PRD_000351 C7  H9  SING N N 19 
PRD_000351 C7  H10 SING N N 20 
PRD_000351 N2  C8  SING N N 21 
PRD_000351 N2  H11 SING N N 22 
PRD_000351 C8  C9  SING N N 23 
PRD_000351 C8  C10 SING N N 24 
PRD_000351 C8  H12 SING N N 25 
PRD_000351 C9  O5  DOUB N N 26 
PRD_000351 C10 H13 SING N N 27 
PRD_000351 C10 H14 SING N N 28 
PRD_000351 C10 H15 SING N N 29 
PRD_000351 N3  C11 SING N N 30 
PRD_000351 N3  C15 SING N N 31 
PRD_000351 C11 C12 SING N N 32 
PRD_000351 C11 C13 SING N N 33 
PRD_000351 C11 H16 SING N N 34 
PRD_000351 C12 O6  DOUB N N 35 
PRD_000351 C13 C14 SING N N 36 
PRD_000351 C13 H17 SING N N 37 
PRD_000351 C13 H18 SING N N 38 
PRD_000351 C14 C15 SING N N 39 
PRD_000351 C14 H19 SING N N 40 
PRD_000351 C14 H20 SING N N 41 
PRD_000351 C15 H21 SING N N 42 
PRD_000351 C15 H22 SING N N 43 
PRD_000351 N4  C16 SING N N 44 
PRD_000351 N4  H23 SING N N 45 
PRD_000351 C16 C17 SING N N 46 
PRD_000351 C16 C18 SING N N 47 
PRD_000351 C16 H24 SING N N 48 
PRD_000351 C17 O7  DOUB N N 49 
PRD_000351 C17 O8  SING N N 50 
PRD_000351 C18 C19 SING N N 51 
PRD_000351 C18 H25 SING N N 52 
PRD_000351 C18 H26 SING N N 53 
PRD_000351 C19 C20 SING N N 54 
PRD_000351 C19 H27 SING N N 55 
PRD_000351 C19 H28 SING N N 56 
PRD_000351 C20 N5  SING N N 57 
PRD_000351 C20 H29 SING N N 58 
PRD_000351 C20 H30 SING N N 59 
PRD_000351 N5  C21 SING N N 60 
PRD_000351 N5  H31 SING N N 61 
PRD_000351 C21 N6  SING N N 62 
PRD_000351 C21 N7  DOUB N N 63 
PRD_000351 N6  H32 SING N N 64 
PRD_000351 N6  H33 SING N N 65 
PRD_000351 N7  H34 SING N N 66 
PRD_000351 N7  H35 SING N N 67 
PRD_000351 O8  H36 SING N N 68 
PRD_000351 C4  N1  SING N N 69 
PRD_000351 C6  N2  SING N N 70 
PRD_000351 C9  N3  SING N N 71 
PRD_000351 C12 N4  SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_000351 SMILES           ACDLabs              12.01 "O=C(NC(C(=O)O)CCCNC(=[NH2+])\N)C1N(C(=O)C(NC(=O)C(NC(=O)CCC(=O)O)C)C)CCC1"                                                                                                                                      
PRD_000351 InChI            InChI                1.03  "InChI=1S/C21H35N7O8/c1-11(25-15(29)7-8-16(30)31)17(32)26-12(2)19(34)28-10-4-6-14(28)18(33)27-13(20(35)36)5-3-9-24-21(22)23/h11-14H,3-10H2,1-2H3,(H,25,29)(H,26,32)(H,27,33)(H,30,31)(H,35,36)(H4,22,23,24)/p+1" 
PRD_000351 InChIKey         InChI                1.03  MQEPXLFPQSCISK-UHFFFAOYSA-O                                                                                                                                                                                      
PRD_000351 SMILES_CANONICAL CACTVS               3.370 "C[C@H](NC(=O)CCC(O)=O)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(N)=[NH2+])C(O)=O"                                                                                                                       
PRD_000351 SMILES           CACTVS               3.370 "C[CH](NC(=O)CCC(O)=O)C(=O)N[CH](C)C(=O)N1CCC[CH]1C(=O)N[CH](CCCNC(N)=[NH2+])C(O)=O"                                                                                                                             
PRD_000351 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(=[NH2+])N)C(=O)O)NC(=O)CCC(=O)O"                                                                                                                      
PRD_000351 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C(=O)NC(C)C(=O)N1CCCC1C(=O)NC(CCCNC(=[NH2+])N)C(=O)O)NC(=O)CCC(=O)O"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_000351 "SYSTEMATIC NAME" ACDLabs              12.01 "N-(3-carboxypropanoyl)-L-alanyl-L-alanyl-L-prolyl-N~5~-[amino(iminio)methyl]-L-ornithine"                                                                                                                   
PRD_000351 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(4S)-5-oxidanyl-5-oxidanylidene-4-[[(2S)-1-[(2S)-2-[[(2S)-2-[(4-oxidanyl-4-oxidanylidene-butanoyl)amino]propanoyl]amino]propanoyl]pyrrolidin-2-yl]carbonylamino]pentyl]amino]methylidene]azanium" 
# 
