data_PRDCC_002473
# 
_chem_comp.id                                    PRD_002473 
_chem_comp.name                                  "Agrocinopine A (beta-L-arabinopyranose form)" 
_chem_comp.formula                               "C17 H31 O18 P" 
_chem_comp.formula_weight                        554.391 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  saccharide 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_002473 C1  C1  C 0 1 N N S 25.801 2.553  146.415 -4.374 -0.912 0.973  GLC 1 C1  polymer     1 1 1  ? ? ? 
PRD_002473 C2  C2  C 0 1 N N R 25.495 1.523  147.499 -5.455 -1.739 0.271  GLC 1 C2  polymer     1 1 2  ? ? ? 
PRD_002473 C3  C3  C 0 1 N N S 24.552 2.141  148.526 -5.524 -1.328 -1.203 GLC 1 C3  polymer     1 1 3  ? ? ? 
PRD_002473 C4  C4  C 0 1 N N S 25.213 3.360  149.127 -5.795 0.177  -1.290 GLC 1 C4  polymer     1 1 4  ? ? ? 
PRD_002473 C5  C5  C 0 1 N N R 25.579 4.344  148.025 -4.701 0.929  -0.528 GLC 1 C5  polymer     1 1 5  ? ? ? 
PRD_002473 C6  C6  C 0 1 N N N 26.420 5.483  148.532 -4.997 2.430  -0.560 GLC 1 C6  polymer     1 1 6  ? ? ? 
PRD_002473 O1  O1  O 0 1 N N N 24.959 0.379  146.867 -5.131 -3.127 0.366  GLC 1 O2  polymer     1 1 7  ? ? ? 
PRD_002473 O2  O2  O 0 1 N N N 24.189 1.246  149.576 -6.580 -2.042 -1.849 GLC 1 O3  polymer     1 1 8  ? ? ? 
PRD_002473 O3  O3  O 0 1 N N N 24.362 4.035  150.044 -5.790 0.584  -2.660 GLC 1 O4  polymer     1 1 9  ? ? ? 
PRD_002473 O4  O4  O 0 1 N N N 26.373 3.689  147.021 -4.670 0.478  0.827  GLC 1 O5  polymer     1 1 10 ? ? ? 
PRD_002473 O5  O5  O 0 1 N N N 27.594 5.041  149.173 -3.918 3.141  0.049  GLC 1 O6  polymer     1 1 11 ? ? ? 
PRD_002473 C7  C7  C 0 1 N N N 24.722 1.588  143.607 -2.042 -1.111 2.561  FRU 2 C1  polymer     1 1 12 ? ? ? 
PRD_002473 C8  C8  C 0 1 N N R 24.589 2.975  144.222 -1.996 -0.646 1.104  FRU 2 C2  polymer     1 1 13 ? ? ? 
PRD_002473 C9  C9  C 0 1 N N S 23.354 3.765  143.746 -0.674 -1.096 0.452  FRU 2 C3  polymer     1 1 14 ? ? ? 
PRD_002473 C10 C10 C 0 1 N N S 23.778 5.189  144.044 0.036  0.229  0.080  FRU 2 C4  polymer     1 1 15 ? ? ? 
PRD_002473 C11 C11 C 0 1 N N R 25.238 5.151  143.579 -0.664 1.246  1.017  FRU 2 C5  polymer     1 1 16 ? ? ? 
PRD_002473 C12 C12 C 0 1 N N N 26.106 6.187  144.267 -0.580 2.659  0.437  FRU 2 C6  polymer     1 1 17 ? ? ? 
PRD_002473 O6  O6  O 0 1 N N N 23.901 0.621  144.287 -3.181 -0.540 3.207  FRU 2 O1  polymer     1 1 18 ? ? ? 
PRD_002473 O7  O7  O 0 1 N Y N 24.614 2.852  145.618 -3.103 -1.193 0.384  FRU 2 O2  polymer     1 1 19 ? ? ? 
PRD_002473 O8  O8  O 0 1 N N N 22.193 3.365  144.468 -0.932 -1.872 -0.720 FRU 2 O3  polymer     1 1 20 ? ? ? 
PRD_002473 O9  O9  O 0 1 N N N 25.696 3.798  143.837 -2.033 0.789  1.048  FRU 2 O5  polymer     1 1 21 ? ? ? 
PRD_002473 O10 O10 O 0 1 N N N 27.490 5.972  144.001 -1.128 3.591  1.372  FRU 2 O6  polymer     1 1 22 ? ? ? 
PRD_002473 O11 O11 O 0 1 N N N 21.781 7.015  145.294 2.513  1.834  -1.350 VDF 3 OP2 non-polymer 2 2 23 ? ? ? 
PRD_002473 P1  P1  P 0 1 N N N 22.042 7.179  143.828 2.567  0.333  -0.768 VDF 3 P   non-polymer 2 2 24 ? ? ? 
PRD_002473 O12 O12 O 0 1 N N N 20.979 7.143  142.814 2.326  -0.630 -1.865 VDF 3 OP1 non-polymer 2 2 25 ? ? ? 
PRD_002473 O13 O13 O 0 1 N Y N 22.975 6.029  143.200 1.435  0.154  0.362  VDF 3 OP3 non-polymer 2 2 26 ? ? ? 
PRD_002473 O14 O14 O 0 1 N N N 22.839 8.544  143.706 4.017  0.060  -0.124 VDF 3 O2  non-polymer 2 2 27 ? ? ? 
PRD_002473 C13 C13 C 0 1 N N R 23.027 9.326  142.534 5.220  0.039  -0.894 VDF 3 C2  non-polymer 2 2 28 ? ? ? 
PRD_002473 C14 C14 C 0 1 N N S 24.561 9.471  142.273 5.888  -1.333 -0.763 VDF 3 C3  non-polymer 2 2 29 ? ? ? 
PRD_002473 O15 O15 O 0 1 N N N 25.056 8.219  141.833 7.056  -1.377 -1.585 VDF 3 O3  non-polymer 2 2 30 ? ? ? 
PRD_002473 C15 C15 C 0 1 N N S 24.831 10.542 141.228 6.281  -1.560 0.700  VDF 3 C4  non-polymer 2 2 31 ? ? ? 
PRD_002473 O16 O16 O 0 1 N N N 24.289 10.119 140.005 6.970  -2.806 0.821  VDF 3 O4  non-polymer 2 2 32 ? ? ? 
PRD_002473 C16 C16 C 0 1 N N N 24.200 11.823 141.628 7.198  -0.422 1.155  VDF 3 C5  non-polymer 2 2 33 ? ? ? 
PRD_002473 O17 O17 O 0 1 N N N 22.771 11.685 141.891 6.528  0.828  0.979  VDF 3 O5  non-polymer 2 2 34 ? ? ? 
PRD_002473 C17 C17 C 0 1 N N S 22.470 10.726 142.935 6.177  1.116  -0.378 VDF 3 C1  non-polymer 2 2 35 ? ? ? 
PRD_002473 O18 O18 O 0 1 N Y N 22.885 11.036 144.197 5.540  2.394  -0.444 VDF 3 O1  non-polymer 2 2 36 ? ? ? 
PRD_002473 H1  H1  H 0 1 N N N 26.549 2.102  145.746 -4.350 -1.170 2.032  GLC 1 H1  polymer     1 1 37 ? ? ? 
PRD_002473 H2  H2  H 0 1 N N N 26.436 1.264  148.005 -6.419 -1.556 0.746  GLC 1 H2  polymer     1 1 38 ? ? ? 
PRD_002473 H3  H3  H 0 1 N N N 23.644 2.469  147.999 -4.576 -1.557 -1.690 GLC 1 H3  polymer     1 1 39 ? ? ? 
PRD_002473 H4  H4  H 0 1 N N N 26.136 3.045  149.635 -6.766 0.399  -0.847 GLC 1 H4  polymer     1 1 40 ? ? ? 
PRD_002473 H5  H5  H 0 1 N N N 24.656 4.744  147.579 -3.736 0.739  -0.997 GLC 1 H5  polymer     1 1 41 ? ? ? 
PRD_002473 H6  H6  H 0 1 N N N 26.701 6.121  147.681 -5.110 2.756  -1.594 GLC 1 H61 polymer     1 1 42 ? ? ? 
PRD_002473 H7  H7  H 0 1 N N N 25.826 6.069  149.249 -5.919 2.630  -0.014 GLC 1 H62 polymer     1 1 43 ? ? ? 
PRD_002473 H8  H8  H 0 1 N Y N 24.759 -0.280 147.521 -5.066 -3.455 1.273  GLC 1 HO2 polymer     1 1 44 ? ? ? 
PRD_002473 H9  H9  H 0 1 N Y N 23.604 1.687  150.180 -6.477 -3.003 -1.826 GLC 1 HO3 polymer     1 1 45 ? ? ? 
PRD_002473 H10 H10 H 0 1 N Y N 24.814 4.792  150.398 -6.456 0.143  -3.204 GLC 1 HO4 polymer     1 1 46 ? ? ? 
PRD_002473 H11 H11 H 0 1 N Y N 28.092 5.791  149.476 -4.038 4.101  0.064  GLC 1 HO6 polymer     1 1 47 ? ? ? 
PRD_002473 H12 H12 H 0 1 N N N 24.416 1.636  142.552 -2.113 -2.199 2.593  FRU 2 H11 polymer     1 1 48 ? ? ? 
PRD_002473 H13 H13 H 0 1 N N N 25.773 1.270  143.670 -1.135 -0.791 3.074  FRU 2 H12 polymer     1 1 49 ? ? ? 
PRD_002473 H14 H14 H 0 1 N N N 23.221 3.629  142.663 -0.072 -1.664 1.162  FRU 2 H3  polymer     1 1 50 ? ? ? 
PRD_002473 H15 H15 H 0 1 N N N 23.693 5.433  145.113 -0.136 0.481  -0.966 FRU 2 H4  polymer     1 1 51 ? ? ? 
PRD_002473 H16 H16 H 0 1 N N N 25.260 5.342  142.496 -0.224 1.215  2.014  FRU 2 H5  polymer     1 1 52 ? ? ? 
PRD_002473 H17 H17 H 0 1 N N N 25.824 7.187  143.905 0.463  2.910  0.242  FRU 2 H61 polymer     1 1 53 ? ? ? 
PRD_002473 H18 H18 H 0 1 N N N 25.938 6.130  145.353 -1.145 2.704  -0.494 FRU 2 H62 polymer     1 1 54 ? ? ? 
PRD_002473 H19 H19 H 0 1 N Y N 24.009 -0.230 143.878 -3.274 -0.792 4.136  FRU 2 HO1 polymer     1 1 55 ? ? ? 
PRD_002473 H20 H20 H 0 1 N Y N 21.443 3.861  144.162 -0.134 -2.181 -1.170 FRU 2 HO3 polymer     1 1 56 ? ? ? 
PRD_002473 H21 H21 H 0 1 N Y N 28.005 6.636  144.445 -1.107 4.509  1.069  FRU 2 HO6 polymer     1 1 57 ? ? ? 
PRD_002473 H22 H22 H 0 1 N N N 20.850 6.890  145.438 2.663  2.519  -0.685 VDF 3 H1A non-polymer 2 2 58 ? ? ? 
PRD_002473 H23 H23 H 0 1 N N N 22.507 8.926  141.651 4.986  0.232  -1.941 VDF 3 H2  non-polymer 2 2 59 ? ? ? 
PRD_002473 H24 H24 H 0 1 N N N 25.046 9.764  143.216 5.191  -2.110 -1.079 VDF 3 H3  non-polymer 2 2 60 ? ? ? 
PRD_002473 H25 H25 H 0 1 N Y N 24.881 7.559  142.494 7.530  -2.219 -1.551 VDF 3 HO3 non-polymer 2 2 61 ? ? ? 
PRD_002473 H26 H26 H 0 1 N N N 25.918 10.684 141.138 5.385  -1.577 1.319  VDF 3 H4  non-polymer 2 2 62 ? ? ? 
PRD_002473 H27 H27 H 0 1 N Y N 24.692 9.298  139.747 7.250  -3.015 1.723  VDF 3 HO4 non-polymer 2 2 63 ? ? ? 
PRD_002473 H28 H28 H 0 1 N N N 24.340 12.553 140.818 7.447  -0.555 2.208  VDF 3 H51 non-polymer 2 2 64 ? ? ? 
PRD_002473 H29 H29 H 0 1 N N N 24.693 12.189 142.541 8.112  -0.432 0.562  VDF 3 H52 non-polymer 2 2 65 ? ? ? 
PRD_002473 H30 H30 H 0 1 N N N 21.376 10.613 142.957 7.078  1.127  -0.992 VDF 3 H1  non-polymer 2 2 66 ? ? ? 
PRD_002473 H31 H31 H 0 1 N Y N 22.634 10.340 144.793 6.090  3.124  -0.130 VDF 3 HO1 non-polymer 2 2 67 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_002473 C1  C2  SING N N 1  
PRD_002473 C1  O4  SING N N 2  
PRD_002473 C1  H1  SING N N 3  
PRD_002473 C2  C3  SING N N 4  
PRD_002473 C2  O1  SING N N 5  
PRD_002473 C2  H2  SING N N 6  
PRD_002473 C3  C4  SING N N 7  
PRD_002473 C3  O2  SING N N 8  
PRD_002473 C3  H3  SING N N 9  
PRD_002473 C4  C5  SING N N 10 
PRD_002473 C4  O3  SING N N 11 
PRD_002473 C4  H4  SING N N 12 
PRD_002473 C5  C6  SING N N 13 
PRD_002473 C5  O4  SING N N 14 
PRD_002473 C5  H5  SING N N 15 
PRD_002473 C6  O5  SING N N 16 
PRD_002473 C6  H6  SING N N 17 
PRD_002473 C6  H7  SING N N 18 
PRD_002473 O1  H8  SING N N 19 
PRD_002473 O2  H9  SING N N 20 
PRD_002473 O3  H10 SING N N 21 
PRD_002473 O5  H11 SING N N 22 
PRD_002473 C7  C8  SING N N 23 
PRD_002473 C7  O6  SING N N 24 
PRD_002473 C7  H12 SING N N 25 
PRD_002473 C7  H13 SING N N 26 
PRD_002473 C8  C9  SING N N 27 
PRD_002473 C8  O7  SING N N 28 
PRD_002473 C8  O9  SING N N 29 
PRD_002473 C9  C10 SING N N 30 
PRD_002473 C9  O8  SING N N 31 
PRD_002473 C9  H14 SING N N 32 
PRD_002473 C10 C11 SING N N 33 
PRD_002473 C10 H15 SING N N 34 
PRD_002473 C11 C12 SING N N 35 
PRD_002473 C11 O9  SING N N 36 
PRD_002473 C11 H16 SING N N 37 
PRD_002473 C12 O10 SING N N 38 
PRD_002473 C12 H17 SING N N 39 
PRD_002473 C12 H18 SING N N 40 
PRD_002473 O6  H19 SING N N 41 
PRD_002473 O8  H20 SING N N 42 
PRD_002473 O10 H21 SING N N 43 
PRD_002473 O18 C17 SING N N 44 
PRD_002473 C16 O17 SING N N 45 
PRD_002473 C16 C15 SING N N 46 
PRD_002473 O17 C17 SING N N 47 
PRD_002473 C17 C13 SING N N 48 
PRD_002473 C15 C14 SING N N 49 
PRD_002473 C15 O16 SING N N 50 
PRD_002473 C14 C13 SING N N 51 
PRD_002473 C14 O15 SING N N 52 
PRD_002473 C13 O14 SING N N 53 
PRD_002473 O14 P1  SING N N 54 
PRD_002473 O12 P1  DOUB N N 55 
PRD_002473 P1  O13 SING N N 56 
PRD_002473 P1  O11 SING N N 57 
PRD_002473 O11 H22 SING N N 58 
PRD_002473 C13 H23 SING N N 59 
PRD_002473 C14 H24 SING N N 60 
PRD_002473 O15 H25 SING N N 61 
PRD_002473 C15 H26 SING N N 62 
PRD_002473 O16 H27 SING N N 63 
PRD_002473 C16 H28 SING N N 64 
PRD_002473 C16 H29 SING N N 65 
PRD_002473 C17 H30 SING N N 66 
PRD_002473 O18 H31 SING N N 67 
PRD_002473 C1  O7  SING N N 68 
PRD_002473 C10 O13 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_002473 InChI            InChI                1.06  "InChI=1S/C17H31O18P/c18-1-6-9(23)10(24)11(25)16(31-6)33-17(4-20)14(26)12(7(2-19)32-17)34-36(28,29)35-13-8(22)5(21)3-30-15(13)27/h5-16,18-27H,1-4H2,(H,28,29)/t5-,6+,7+,8-,9+,10-,11+,12+,13+,14-,15-,16+,17-/m0/s1" 
PRD_002473 InChIKey         InChI                1.06  BUKOQCAFSQWRGX-OWOBWKAYSA-N                                                                                                                                                                                          
PRD_002473 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](O[C@]2(CO)O[C@H](CO)[C@@H](O[P](O)(=O)O[C@H]3[C@@H](O)OC[C@H](O)[C@@H]3O)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O"                                                                                         
PRD_002473 SMILES           CACTVS               3.385 "OC[CH]1O[CH](O[C]2(CO)O[CH](CO)[CH](O[P](O)(=O)O[CH]3[CH](O)OC[CH](O)[CH]3O)[CH]2O)[CH](O)[CH](O)[CH]1O"                                                                                                            
PRD_002473 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]([C@H]([C@H](O1)O)OP(=O)(O)O[C@@H]2[C@H](O[C@@]([C@H]2O)(CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)CO)O)O"                                                                                    
PRD_002473 SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(O1)O)OP(=O)(O)OC2C(OC(C2O)(CO)OC3C(C(C(C(O3)CO)O)O)O)CO)O)O"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           PRD_002473 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{S},5~{S})-2,5-bis(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-oxidanyl-oxolan-3-yl] [(2~{S},3~{R},4~{S},5~{S})-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate" 
# 
