data_PRDCC_000315
# 
_chem_comp.id                                    PRD_000315 
_chem_comp.name                                  O-methylsuccinyl-alanyl-alanyl-prolyl-borophenylalanine 
_chem_comp.formula                               "C24 H35 B N4 O8" 
_chem_comp.formula_weight                        518.368 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_000315 C1  C1  C 0 1 N N N ?      ?      ?      6.536   -0.809 0.184  MSU 1 C1  polymer 1 1 1  ? ? ? 
PRD_000315 O1  O1  O 0 1 N N N ?      ?      ?      6.332   -2.004 0.166  MSU 1 O1  polymer 1 1 2  ? ? ? 
PRD_000315 C2  C2  C 0 1 N N N ?      ?      ?      7.942   -0.282 0.059  MSU 1 C2  polymer 1 1 3  ? ? ? 
PRD_000315 C3  C3  C 0 1 N N N ?      ?      ?      8.915   -1.455 -0.078 MSU 1 C3  polymer 1 1 4  ? ? ? 
PRD_000315 C4  C4  C 0 1 N N N ?      ?      ?      10.322  -0.929 -0.204 MSU 1 C4  polymer 1 1 5  ? ? ? 
PRD_000315 O2  O2  O 0 1 N N N ?      ?      ?      10.525  0.262  -0.185 MSU 1 OT1 polymer 1 1 6  ? ? ? 
PRD_000315 O3  O3  O 0 1 N N N ?      ?      ?      11.349  -1.783 -0.336 MSU 1 OT2 polymer 1 1 7  ? ? ? 
PRD_000315 C5  C5  C 0 1 N N N ?      ?      ?      12.676  -1.206 -0.451 MSU 1 CT  polymer 1 1 8  ? ? ? 
PRD_000315 N1  N1  N 0 1 N N N 13.967 41.848 18.339 5.504   0.049  0.312  ALA 2 N   polymer 1 1 9  ? ? ? 
PRD_000315 C6  C6  C 0 1 N N S 14.645 40.698 17.769 4.136   -0.462 0.427  ALA 2 CA  polymer 1 1 10 ? ? ? 
PRD_000315 C7  C7  C 0 1 N N N 13.757 39.549 18.204 3.165   0.588  -0.049 ALA 2 C   polymer 1 1 11 ? ? ? 
PRD_000315 O4  O4  O 0 1 N N N 13.146 39.670 19.269 3.576   1.658  -0.445 ALA 2 O   polymer 1 1 12 ? ? ? 
PRD_000315 C8  C8  C 0 1 N N N 16.039 40.474 18.360 3.841   -0.804 1.889  ALA 2 CB  polymer 1 1 13 ? ? ? 
PRD_000315 N2  N2  N 0 1 N N N 13.629 38.513 17.396 1.841   0.338  -0.034 ALA 3 N   polymer 1 1 14 ? ? ? 
PRD_000315 C9  C9  C 0 1 N N S 12.770 37.385 17.713 0.897   1.358  -0.496 ALA 3 CA  polymer 1 1 15 ? ? ? 
PRD_000315 C10 C10 C 0 1 N N N 13.567 36.128 17.386 -0.443  1.134  0.154  ALA 3 C   polymer 1 1 16 ? ? ? 
PRD_000315 O5  O5  O 0 1 N N N 14.441 36.235 16.511 -0.754  0.026  0.538  ALA 3 O   polymer 1 1 17 ? ? ? 
PRD_000315 C11 C11 C 0 1 N N N 11.543 37.459 16.846 0.749   1.264  -2.016 ALA 3 CB  polymer 1 1 18 ? ? ? 
PRD_000315 N3  N3  N 0 1 N N N 13.378 34.962 18.052 -1.297  2.165  0.310  PRO 4 N   polymer 1 1 19 ? ? ? 
PRD_000315 C12 C12 C 0 1 N N S 14.103 33.711 17.790 -2.589  2.110  1.009  PRO 4 CA  polymer 1 1 20 ? ? ? 
PRD_000315 C13 C13 C 0 1 N N N 13.888 33.235 16.351 -3.486  1.094  0.349  PRO 4 C   polymer 1 1 21 ? ? ? 
PRD_000315 O6  O6  O 0 1 N N N 12.793 33.402 15.794 -3.091  0.472  -0.614 PRO 4 O   polymer 1 1 22 ? ? ? 
PRD_000315 C14 C14 C 0 1 N N N 13.560 32.712 18.782 -3.224  3.513  0.911  PRO 4 CB  polymer 1 1 23 ? ? ? 
PRD_000315 C15 C15 C 0 1 N N N 12.864 33.529 19.816 -2.515  4.129  -0.324 PRO 4 CG  polymer 1 1 24 ? ? ? 
PRD_000315 C16 C16 C 0 1 N N N 12.292 34.683 18.988 -1.088  3.537  -0.188 PRO 4 CD  polymer 1 1 25 ? ? ? 
PRD_000315 N4  N4  N 0 1 N N N 14.909 32.629 15.746 -4.727  0.877  0.829  B2F 5 N   polymer 1 1 26 ? ? ? 
PRD_000315 C17 C17 C 0 1 N N R 14.865 32.124 14.394 -5.598  -0.110 0.187  B2F 5 CA  polymer 1 1 27 ? ? ? 
PRD_000315 C18 C18 C 0 1 N N N 15.994 32.825 13.608 -6.270  -0.970 1.259  B2F 5 CB  polymer 1 1 28 ? ? ? 
PRD_000315 C19 C19 C 0 1 Y N N 15.639 34.214 13.138 -7.167  -1.986 0.599  B2F 5 CG  polymer 1 1 29 ? ? ? 
PRD_000315 C20 C20 C 0 1 Y N N 16.397 34.760 12.120 -6.666  -3.225 0.247  B2F 5 CD1 polymer 1 1 30 ? ? ? 
PRD_000315 C21 C21 C 0 1 Y N N 14.579 34.944 13.691 -8.492  -1.680 0.351  B2F 5 CD2 polymer 1 1 31 ? ? ? 
PRD_000315 C22 C22 C 0 1 Y N N 16.084 36.041 11.651 -7.488  -4.157 -0.358 B2F 5 CE1 polymer 1 1 32 ? ? ? 
PRD_000315 C23 C23 C 0 1 Y N N 14.270 36.216 13.226 -9.314  -2.612 -0.254 B2F 5 CE2 polymer 1 1 33 ? ? ? 
PRD_000315 C24 C24 C 0 1 Y N N 15.025 36.768 12.197 -8.812  -3.849 -0.611 B2F 5 CZ  polymer 1 1 34 ? ? ? 
PRD_000315 B1  B1  B 0 1 N N N 14.989 30.569 14.380 -6.698  0.631  -0.654 B2F 5 B   polymer 1 1 35 ? ? ? 
PRD_000315 O7  O7  O 0 1 N N N 14.818 30.157 13.012 -7.233  0.019  -1.818 B2F 5 O1  polymer 1 1 36 ? ? ? 
PRD_000315 O8  O8  O 0 1 N N N 13.804 30.095 14.999 -7.157  1.913  -0.250 B2F 5 O2  polymer 1 1 37 ? ? ? 
PRD_000315 H1  H1  H 0 1 N N N ?      ?      ?      8.015   0.355  -0.822 MSU 1 H21 polymer 1 1 38 ? ? ? 
PRD_000315 H2  H2  H 0 1 N N N ?      ?      ?      8.194   0.296  0.948  MSU 1 H22 polymer 1 1 39 ? ? ? 
PRD_000315 H3  H3  H 0 1 N N N ?      ?      ?      8.843   -2.092 0.803  MSU 1 H31 polymer 1 1 40 ? ? ? 
PRD_000315 H4  H4  H 0 1 N N N ?      ?      ?      8.663   -2.034 -0.967 MSU 1 H32 polymer 1 1 41 ? ? ? 
PRD_000315 H5  H5  H 0 1 N N N ?      ?      ?      12.896  -0.619 0.441  MSU 1 HT1 polymer 1 1 42 ? ? ? 
PRD_000315 H6  H6  H 0 1 N N N ?      ?      ?      13.412  -2.003 -0.552 MSU 1 HT2 polymer 1 1 43 ? ? ? 
PRD_000315 H7  H7  H 0 1 N N N ?      ?      ?      12.716  -0.561 -1.329 MSU 1 HT3 polymer 1 1 44 ? ? ? 
PRD_000315 H8  H8  H 0 1 N N N 13.872 42.751 18.759 5.667   1.005  0.327  ALA 2 H   polymer 1 1 45 ? ? ? 
PRD_000315 H9  H9  H 0 1 N N N 14.696 40.758 16.672 4.030   -1.359 -0.184 ALA 2 HA  polymer 1 1 46 ? ? ? 
PRD_000315 H10 H10 H 0 1 N N N 16.500 39.592 17.890 4.543   -1.563 2.233  ALA 2 HB1 polymer 1 1 47 ? ? ? 
PRD_000315 H11 H11 H 0 1 N N N 16.664 41.359 18.170 3.947   0.092  2.500  ALA 2 HB2 polymer 1 1 48 ? ? ? 
PRD_000315 H12 H12 H 0 1 N N N 15.955 40.310 19.444 2.824   -1.185 1.975  ALA 2 HB3 polymer 1 1 49 ? ? ? 
PRD_000315 H13 H13 H 0 1 N N N 14.141 38.504 16.537 1.513   -0.518 0.284  ALA 3 H   polymer 1 1 50 ? ? ? 
PRD_000315 H14 H14 H 0 1 N N N 12.488 37.388 18.776 1.271   2.346  -0.228 ALA 3 HA  polymer 1 1 51 ? ? ? 
PRD_000315 H15 H15 H 0 1 N N N 10.881 36.611 17.074 0.293   0.309  -2.278 ALA 3 HB1 polymer 1 1 52 ? ? ? 
PRD_000315 H16 H16 H 0 1 N N N 11.012 38.402 17.043 0.117   2.078  -2.371 ALA 3 HB2 polymer 1 1 53 ? ? ? 
PRD_000315 H17 H17 H 0 1 N N N 11.839 37.419 15.787 1.732   1.337  -2.482 ALA 3 HB3 polymer 1 1 54 ? ? ? 
PRD_000315 H18 H18 H 0 1 N N N 15.179 33.855 17.966 -2.434  1.843  2.054  PRO 4 HA  polymer 1 1 55 ? ? ? 
PRD_000315 H19 H19 H 0 1 N N N 12.853 32.026 18.292 -4.299  3.439  0.741  PRO 4 HB2 polymer 1 1 56 ? ? ? 
PRD_000315 H20 H20 H 0 1 N N N 14.379 32.133 19.234 -3.013  4.095  1.808  PRO 4 HB3 polymer 1 1 57 ? ? ? 
PRD_000315 H21 H21 H 0 1 N N N 12.064 32.955 20.305 -2.990  3.805  -1.250 PRO 4 HG2 polymer 1 1 58 ? ? ? 
PRD_000315 H22 H22 H 0 1 N N N 13.570 33.895 20.576 -2.493  5.217  -0.258 PRO 4 HG3 polymer 1 1 59 ? ? ? 
PRD_000315 H23 H23 H 0 1 N N N 12.076 35.557 19.619 -0.501  4.114  0.527  PRO 4 HD2 polymer 1 1 60 ? ? ? 
PRD_000315 H24 H24 H 0 1 N N N 11.378 34.378 18.458 -0.592  3.517  -1.158 PRO 4 HD3 polymer 1 1 61 ? ? ? 
PRD_000315 H25 H25 H 0 1 N N N 15.759 32.517 16.261 -5.043  1.375  1.599  B2F 5 H   polymer 1 1 62 ? ? ? 
PRD_000315 H26 H26 H 0 1 N N N 13.904 32.394 13.931 -5.005  -0.746 -0.470 B2F 5 HA  polymer 1 1 63 ? ? ? 
PRD_000315 H27 H27 H 0 1 N N N 16.878 32.895 14.259 -5.507  -1.485 1.843  B2F 5 HB1 polymer 1 1 64 ? ? ? 
PRD_000315 H28 H28 H 0 1 N N N 16.235 32.212 12.727 -6.863  -0.335 1.917  B2F 5 HB2 polymer 1 1 65 ? ? ? 
PRD_000315 H29 H29 H 0 1 N N N 17.220 34.206 11.692 -5.631  -3.466 0.445  B2F 5 HD1 polymer 1 1 66 ? ? ? 
PRD_000315 H30 H30 H 0 1 N N N 13.994 34.512 14.490 -8.884  -0.714 0.631  B2F 5 HD2 polymer 1 1 67 ? ? ? 
PRD_000315 H31 H31 H 0 1 N N N 16.671 36.474 10.854 -7.096  -5.125 -0.634 B2F 5 HE1 polymer 1 1 68 ? ? ? 
PRD_000315 H32 H32 H 0 1 N N N 13.451 36.771 13.660 -10.350 -2.373 -0.448 B2F 5 HE2 polymer 1 1 69 ? ? ? 
PRD_000315 H33 H33 H 0 1 N N N 14.793 37.754 11.822 -9.454  -4.577 -1.084 B2F 5 HZ  polymer 1 1 70 ? ? ? 
PRD_000315 H34 H34 H 0 1 N N N 14.886 29.211 12.955 -6.860  -0.851 -2.012 B2F 5 HO1 polymer 1 1 71 ? ? ? 
PRD_000315 H35 H35 H 0 1 N N N 13.817 29.145 15.023 -6.735  2.247  0.553  B2F 5 HO2 polymer 1 1 72 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_000315 C1  O1  DOUB N N 1  
PRD_000315 C1  C2  SING N N 2  
PRD_000315 C2  C3  SING N N 3  
PRD_000315 C2  H1  SING N N 4  
PRD_000315 C2  H2  SING N N 5  
PRD_000315 C3  C4  SING N N 6  
PRD_000315 C3  H3  SING N N 7  
PRD_000315 C3  H4  SING N N 8  
PRD_000315 C4  O2  DOUB N N 9  
PRD_000315 C4  O3  SING N N 10 
PRD_000315 O3  C5  SING N N 11 
PRD_000315 C5  H5  SING N N 12 
PRD_000315 C5  H6  SING N N 13 
PRD_000315 C5  H7  SING N N 14 
PRD_000315 N1  C6  SING N N 15 
PRD_000315 N1  H8  SING N N 16 
PRD_000315 C6  C7  SING N N 17 
PRD_000315 C6  C8  SING N N 18 
PRD_000315 C6  H9  SING N N 19 
PRD_000315 C7  O4  DOUB N N 20 
PRD_000315 C8  H10 SING N N 21 
PRD_000315 C8  H11 SING N N 22 
PRD_000315 C8  H12 SING N N 23 
PRD_000315 N2  C9  SING N N 24 
PRD_000315 N2  H13 SING N N 25 
PRD_000315 C9  C10 SING N N 26 
PRD_000315 C9  C11 SING N N 27 
PRD_000315 C9  H14 SING N N 28 
PRD_000315 C10 O5  DOUB N N 29 
PRD_000315 C11 H15 SING N N 30 
PRD_000315 C11 H16 SING N N 31 
PRD_000315 C11 H17 SING N N 32 
PRD_000315 N3  C12 SING N N 33 
PRD_000315 N3  C16 SING N N 34 
PRD_000315 C12 C13 SING N N 35 
PRD_000315 C12 C14 SING N N 36 
PRD_000315 C12 H18 SING N N 37 
PRD_000315 C13 O6  DOUB N N 38 
PRD_000315 C14 C15 SING N N 39 
PRD_000315 C14 H19 SING N N 40 
PRD_000315 C14 H20 SING N N 41 
PRD_000315 C15 C16 SING N N 42 
PRD_000315 C15 H21 SING N N 43 
PRD_000315 C15 H22 SING N N 44 
PRD_000315 C16 H23 SING N N 45 
PRD_000315 C16 H24 SING N N 46 
PRD_000315 N4  C17 SING N N 47 
PRD_000315 N4  H25 SING N N 48 
PRD_000315 C17 C18 SING N N 49 
PRD_000315 C17 B1  SING N N 50 
PRD_000315 C17 H26 SING N N 51 
PRD_000315 C18 C19 SING N N 52 
PRD_000315 C18 H27 SING N N 53 
PRD_000315 C18 H28 SING N N 54 
PRD_000315 C19 C20 DOUB Y N 55 
PRD_000315 C19 C21 SING Y N 56 
PRD_000315 C20 C22 SING Y N 57 
PRD_000315 C20 H29 SING N N 58 
PRD_000315 C21 C23 DOUB Y N 59 
PRD_000315 C21 H30 SING N N 60 
PRD_000315 C22 C24 DOUB Y N 61 
PRD_000315 C22 H31 SING N N 62 
PRD_000315 C23 C24 SING Y N 63 
PRD_000315 C23 H32 SING N N 64 
PRD_000315 C24 H33 SING N N 65 
PRD_000315 B1  O7  SING N N 66 
PRD_000315 B1  O8  SING N N 67 
PRD_000315 O7  H34 SING N N 68 
PRD_000315 O8  H35 SING N N 69 
PRD_000315 C1  N1  SING N N 70 
PRD_000315 C13 N4  SING N N 71 
PRD_000315 C7  N2  SING N N 72 
PRD_000315 C10 N3  SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_000315 SMILES           ACDLabs              12.01 "O=C(NC(B(O)O)Cc1ccccc1)C2N(C(=O)C(NC(=O)C(NC(=O)CCC(=O)OC)C)C)CCC2"                                                                                                                                                               
PRD_000315 InChI            InChI                1.03  "InChI=1S/C24H35BN4O8/c1-15(26-20(30)11-12-21(31)37-3)22(32)27-16(2)24(34)29-13-7-10-18(29)23(33)28-19(25(35)36)14-17-8-5-4-6-9-17/h4-6,8-9,15-16,18-19,35-36H,7,10-14H2,1-3H3,(H,26,30)(H,27,32)(H,28,33)/t15-,16?,18?,19-/m0/s1" 
PRD_000315 InChIKey         InChI                1.03  APEBFWNGBDQFTJ-GSHBMFQSSA-N                                                                                                                                                                                                        
PRD_000315 SMILES_CANONICAL CACTVS               3.370 "COC(=O)CCC(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc2ccccc2)B(O)O"                                                                                                                                              
PRD_000315 SMILES           CACTVS               3.370 "COC(=O)CCC(=O)N[CH](C)C(=O)N[CH](C)C(=O)N1CCC[CH]1C(=O)N[CH](Cc2ccccc2)B(O)O"                                                                                                                                                     
PRD_000315 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "B([C@H](Cc1ccccc1)NC(=O)[C@@H]2CCCN2C(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)CCC(=O)OC)(O)O"                                                                                                                                              
PRD_000315 SMILES           "OpenEye OEToolkits" 1.7.6 "B(C(Cc1ccccc1)NC(=O)C2CCCN2C(=O)C(C)NC(=O)C(C)NC(=O)CCC(=O)OC)(O)O"                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_000315 "SYSTEMATIC NAME" ACDLabs              12.01 "N-(4-methoxy-4-oxobutanoyl)-L-alanyl-L-alanyl-N-[(1R)-1-(dihydroxyboranyl)-2-phenylethyl]-L-prolinamide"                                                           
PRD_000315 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R)-1-[[(2S)-1-[(2S)-2-[[(2S)-2-[(4-methoxy-4-oxidanylidene-butanoyl)amino]propanoyl]amino]propanoyl]pyrrolidin-2-yl]carbonylamino]-2-phenyl-ethyl]boronic acid" 
# 
