data_PRDCC_000785
# 
_chem_comp.id                                    PRD_000785 
_chem_comp.name                                  Largazole 
_chem_comp.formula                               "C21 H29 N4 O4 S3" 
_chem_comp.formula_weight                        497.674 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_000785 C1  C1  C 0 1 N N N 1.344  -35.769 17.773 ? ? ? 02G 1 C2   polymer 1 1 1  ? ? ? 
PRD_000785 C2  C2  C 0 1 N N N 2.286  -30.876 19.407 ? ? ? 02G 1 C7   polymer 1 1 2  ? ? ? 
PRD_000785 C3  C3  C 0 1 N N N 1.934  -31.947 20.484 ? ? ? 02G 1 C6   polymer 1 1 3  ? ? ? 
PRD_000785 C4  C4  C 0 1 N N N 2.304  -33.328 19.984 ? ? ? 02G 1 C5   polymer 1 1 4  ? ? ? 
PRD_000785 C5  C5  C 0 1 N N N 1.429  -34.331 19.746 ? ? ? 02G 1 C4   polymer 1 1 5  ? ? ? 
PRD_000785 C6  C6  C 0 1 N N S 1.791  -35.712 19.230 ? ? ? 02G 1 CA   polymer 1 1 6  ? ? ? 
PRD_000785 C7  C7  C 0 1 N N N 1.720  -37.049 17.059 ? ? ? 02G 1 C    polymer 1 1 7  ? ? ? 
PRD_000785 O1  O1  O 0 1 N N N 1.188  -36.784 19.953 ? ? ? 02G 1 O2   polymer 1 1 8  ? ? ? 
PRD_000785 O2  O2  O 0 1 N N N 2.468  -37.867 17.534 ? ? ? 02G 1 O    polymer 1 1 9  ? ? ? 
PRD_000785 S1  S1  S 0 1 N N N 2.278  -29.203 20.160 ? ? ? 02G 1 S    polymer 1 1 10 ? ? ? 
PRD_000785 N1  N1  N 0 1 N N N 0.844  -37.379 16.069 ? ? ? GLY 2 N    polymer 1 1 11 ? ? ? 
PRD_000785 C8  C8  C 0 1 N N N 1.066  -38.586 15.267 ? ? ? GLY 2 CA   polymer 1 1 12 ? ? ? 
PRD_000785 C9  C9  C 0 1 N N N 0.446  -39.759 15.993 ? ? ? GLY 2 C    polymer 1 1 13 ? ? ? 
PRD_000785 N2  N2  N 0 1 N N N -0.174 -39.562 17.138 ? ? ? BB9 3 N    polymer 1 1 14 ? ? ? 
PRD_000785 C10 C10 C 0 1 N N N -0.655 -40.739 17.674 ? ? ? BB9 3 CA   polymer 1 1 15 ? ? ? 
PRD_000785 C11 C11 C 0 1 N N N -1.372 -40.766 18.966 ? ? ? BB9 3 C    polymer 1 1 16 ? ? ? 
PRD_000785 C12 C12 C 0 1 N N N -0.386 -41.830 16.876 ? ? ? BB9 3 CB   polymer 1 1 17 ? ? ? 
PRD_000785 S2  S2  S 0 1 N N N 0.492  -41.367 15.446 ? ? ? BB9 3 SG   polymer 1 1 18 ? ? ? 
PRD_000785 C13 C13 C 0 1 N N N -2.354 -41.442 21.247 ? ? ? 03Y 4 CB   polymer 1 1 19 ? ? ? 
PRD_000785 C14 C14 C 0 1 N N N -0.826 -39.558 21.864 ? ? ? 03Y 4 C    polymer 1 1 20 ? ? ? 
PRD_000785 C15 C15 C 0 1 N N R -2.066 -39.939 21.039 ? ? ? 03Y 4 CA   polymer 1 1 21 ? ? ? 
PRD_000785 C16 C16 C 0 1 N N N -3.291 -39.086 21.453 ? ? ? 03Y 4 CM   polymer 1 1 22 ? ? ? 
PRD_000785 N3  N3  N 0 1 N N N -1.664 -39.675 19.619 ? ? ? 03Y 4 N    polymer 1 1 23 ? ? ? 
PRD_000785 O3  O3  O 0 1 N N N -0.699 -39.834 23.036 ? ? ? 03Y 4 O    polymer 1 1 24 ? ? ? 
PRD_000785 S3  S3  S 0 1 N N N -1.418 -42.209 19.920 ? ? ? 03Y 4 SG   polymer 1 1 25 ? ? ? 
PRD_000785 N4  N4  N 0 1 N N N 0.073  -38.770 21.212 ? ? ? VAL 5 N    polymer 1 1 26 ? ? ? 
PRD_000785 C17 C17 C 0 1 N N S 1.292  -38.289 21.871 ? ? ? VAL 5 CA   polymer 1 1 27 ? ? ? 
PRD_000785 C18 C18 C 0 1 N N N 1.708  -36.978 21.208 ? ? ? VAL 5 C    polymer 1 1 28 ? ? ? 
PRD_000785 O4  O4  O 0 1 N N N 2.705  -36.404 21.584 ? ? ? VAL 5 O    polymer 1 1 29 ? ? ? 
PRD_000785 C19 C19 C 0 1 N N N 2.429  -39.312 21.754 ? ? ? VAL 5 CB   polymer 1 1 30 ? ? ? 
PRD_000785 C20 C20 C 0 1 N N N 2.157  -40.599 22.553 ? ? ? VAL 5 CG1  polymer 1 1 31 ? ? ? 
PRD_000785 C21 C21 C 0 1 N N N 2.642  -39.658 20.271 ? ? ? VAL 5 CG2  polymer 1 1 32 ? ? ? 
PRD_000785 H1  H1  H 0 1 N N N 0.249  -35.666 17.744 ? ? ? 02G 1 H01  polymer 1 1 33 ? ? ? 
PRD_000785 H2  H2  H 0 0 N N N 1.806  -34.927 17.237 ? ? ? 02G 1 H01A polymer 1 1 34 ? ? ? 
PRD_000785 H3  H3  H 0 1 N N N 1.542  -30.915 18.598 ? ? ? 02G 1 H02  polymer 1 1 35 ? ? ? 
PRD_000785 H4  H4  H 0 0 N N N 3.285  -31.086 18.997 ? ? ? 02G 1 H02A polymer 1 1 36 ? ? ? 
PRD_000785 H5  H5  H 0 1 N N N 2.493  -31.732 21.407 ? ? ? 02G 1 H03  polymer 1 1 37 ? ? ? 
PRD_000785 H6  H6  H 0 0 N N N 0.854  -31.912 20.692 ? ? ? 02G 1 H03A polymer 1 1 38 ? ? ? 
PRD_000785 H7  H7  H 0 1 N N N 3.350  -33.527 19.803 ? ? ? 02G 1 H04  polymer 1 1 39 ? ? ? 
PRD_000785 H8  H8  H 0 1 N N N 0.385  -34.133 19.939 ? ? ? 02G 1 H05  polymer 1 1 40 ? ? ? 
PRD_000785 H9  H9  H 0 1 N N N 2.886  -35.817 19.259 ? ? ? 02G 1 HA   polymer 1 1 41 ? ? ? 
PRD_000785 H10 H10 H 0 0 N N N 2.584  -28.449 19.146 ? ? ? 02G 1 HS30 polymer 1 1 42 ? ? ? 
PRD_000785 H11 H11 H 0 1 N N N 0.050  -36.798 15.890 ? ? ? GLY 2 H    polymer 1 1 43 ? ? ? 
PRD_000785 H12 H12 H 0 1 N N N 0.595  -38.468 14.280 ? ? ? GLY 2 HA2  polymer 1 1 44 ? ? ? 
PRD_000785 H13 H13 H 0 1 N N N 2.146  -38.755 15.141 ? ? ? GLY 2 HA3  polymer 1 1 45 ? ? ? 
PRD_000785 H14 H14 H 0 1 N N N -0.682 -42.842 17.108 ? ? ? BB9 3 HB   polymer 1 1 46 ? ? ? 
PRD_000785 H15 H15 H 0 1 N N N -1.999 -41.782 22.231 ? ? ? 03Y 4 HB2  polymer 1 1 47 ? ? ? 
PRD_000785 H16 H16 H 0 1 N N N -3.428 -41.657 21.151 ? ? ? 03Y 4 HB3  polymer 1 1 48 ? ? ? 
PRD_000785 H17 H17 H 0 1 N N N -3.066 -38.021 21.298 ? ? ? 03Y 4 H21  polymer 1 1 49 ? ? ? 
PRD_000785 H18 H18 H 0 0 N N N -4.159 -39.370 20.841 ? ? ? 03Y 4 H21A polymer 1 1 50 ? ? ? 
PRD_000785 H19 H19 H 0 0 N N N -3.518 -39.262 22.515 ? ? ? 03Y 4 H21B polymer 1 1 51 ? ? ? 
PRD_000785 H20 H20 H 0 1 N N N -2.420 -39.216 19.153 ? ? ? 03Y 4 H    polymer 1 1 52 ? ? ? 
PRD_000785 H21 H21 H 0 1 N N N -0.102 -38.513 20.262 ? ? ? VAL 5 H    polymer 1 1 53 ? ? ? 
PRD_000785 H22 H22 H 0 1 N N N 1.090  -38.102 22.936 ? ? ? VAL 5 HA   polymer 1 1 54 ? ? ? 
PRD_000785 H23 H23 H 0 1 N N N 3.351  -38.853 22.139 ? ? ? VAL 5 HB   polymer 1 1 55 ? ? ? 
PRD_000785 H24 H24 H 0 0 N N N 3.003  -41.292 22.432 ? ? ? VAL 5 HG11 polymer 1 1 56 ? ? ? 
PRD_000785 H25 H25 H 0 0 N N N 2.036  -40.351 23.618 ? ? ? VAL 5 HG12 polymer 1 1 57 ? ? ? 
PRD_000785 H26 H26 H 0 0 N N N 1.237  -41.074 22.181 ? ? ? VAL 5 HG13 polymer 1 1 58 ? ? ? 
PRD_000785 H27 H27 H 0 0 N N N 3.456  -40.392 20.178 ? ? ? VAL 5 HG21 polymer 1 1 59 ? ? ? 
PRD_000785 H28 H28 H 0 0 N N N 1.716  -40.084 19.857 ? ? ? VAL 5 HG22 polymer 1 1 60 ? ? ? 
PRD_000785 H29 H29 H 0 0 N N N 2.906  -38.746 19.716 ? ? ? VAL 5 HG23 polymer 1 1 61 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_000785 C1  C6  SING N N 1  
PRD_000785 C1  H1  SING N N 2  
PRD_000785 C1  H2  SING N N 3  
PRD_000785 C2  S1  SING N N 4  
PRD_000785 C2  C3  SING N N 5  
PRD_000785 C2  H3  SING N N 6  
PRD_000785 C2  H4  SING N N 7  
PRD_000785 C3  H5  SING N N 8  
PRD_000785 C3  H6  SING N N 9  
PRD_000785 C4  C3  SING N N 10 
PRD_000785 C4  H7  SING N N 11 
PRD_000785 C5  C4  DOUB N E 12 
PRD_000785 C5  H8  SING N N 13 
PRD_000785 C6  C5  SING N N 14 
PRD_000785 C6  O1  SING N N 15 
PRD_000785 C6  H9  SING N N 16 
PRD_000785 C7  C1  SING N N 17 
PRD_000785 C7  O2  DOUB N N 18 
PRD_000785 S1  H10 SING N N 19 
PRD_000785 N1  C8  SING N N 20 
PRD_000785 N1  H11 SING N N 21 
PRD_000785 C8  C9  SING N N 22 
PRD_000785 C8  H12 SING N N 23 
PRD_000785 C8  H13 SING N N 24 
PRD_000785 N2  C10 SING N N 25 
PRD_000785 C10 C11 SING N N 26 
PRD_000785 C10 C12 DOUB N N 27 
PRD_000785 C12 S2  SING N N 28 
PRD_000785 C12 H14 SING N N 29 
PRD_000785 C13 H15 SING N N 30 
PRD_000785 C13 H16 SING N N 31 
PRD_000785 C14 O3  DOUB N N 32 
PRD_000785 C15 C13 SING N N 33 
PRD_000785 C15 C14 SING N N 34 
PRD_000785 C15 C16 SING N N 35 
PRD_000785 C16 H17 SING N N 36 
PRD_000785 C16 H18 SING N N 37 
PRD_000785 C16 H19 SING N N 38 
PRD_000785 N3  C15 SING N N 39 
PRD_000785 N3  H20 SING N N 40 
PRD_000785 S3  C13 SING N N 41 
PRD_000785 N4  C17 SING N N 42 
PRD_000785 N4  H21 SING N N 43 
PRD_000785 C17 C18 SING N N 44 
PRD_000785 C17 C19 SING N N 45 
PRD_000785 C17 H22 SING N N 46 
PRD_000785 C18 O4  DOUB N N 47 
PRD_000785 C19 C20 SING N N 48 
PRD_000785 C19 C21 SING N N 49 
PRD_000785 C19 H23 SING N N 50 
PRD_000785 C20 H24 SING N N 51 
PRD_000785 C20 H25 SING N N 52 
PRD_000785 C20 H26 SING N N 53 
PRD_000785 C21 H27 SING N N 54 
PRD_000785 C21 H28 SING N N 55 
PRD_000785 C21 H29 SING N N 56 
PRD_000785 C7  N1  SING N N 57 
PRD_000785 O1  C18 SING N N 58 
PRD_000785 C9  S2  SING N N 59 
PRD_000785 C9  N2  DOUB N N 60 
PRD_000785 C11 S3  SING N N 61 
PRD_000785 C11 N3  SING N N 62 
PRD_000785 C14 N4  SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_000785 SMILES           ACDLabs              12.01 "O=C3NCc1scc(n1)C2SCC(N2)(C(=O)NC(C(=O)OC(\C=C/CCS)C3)C(C)C)C"                                                                                                                                                 
PRD_000785 InChI            InChI                1.03  "InChI=1S/C21H30N4O4S3/c1-12(2)17-19(27)29-13(6-4-5-7-30)8-15(26)22-9-16-23-14(10-31-16)18-25-21(3,11-32-18)20(28)24-17/h4,6,10,12-13,17-18,25,30H,5,7-9,11H2,1-3H3,(H,22,26)(H,24,28)/t13?,17?,18-,21+/m1/s1" 
PRD_000785 InChIKey         InChI                1.03  WMXODDMLVSBFJH-ZDYZLYPZSA-N                                                                                                                                                                                    
PRD_000785 SMILES_CANONICAL CACTVS               3.370 "CC(C)[C@@H]1NC(=O)[C@]2(C)CS[C](N2)c3csc(CNC(=O)C[C@H](OC1=O)\C=C\CCS)n3"                                                                                                                                     
PRD_000785 SMILES           CACTVS               3.370 "CC(C)[CH]1NC(=O)[C]2(C)CS[C](N2)c3csc(CNC(=O)C[CH](OC1=O)C=CCCS)n3"                                                                                                                                           
PRD_000785 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)[C@H]1C(=O)O[C@@H](CC(=O)NCc2nc(cs2)[C]3N[C@@](CS3)(C(=O)N1)C)C=CCCS"                                                                                                                                    
PRD_000785 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)C1C(=O)OC(CC(=O)NCc2nc(cs2)[C]3NC(CS3)(C(=O)N1)C)C=CCCS"                                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           PRD_000785 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "(2R,5R,8R,11R)-5-methyl-8-(propan-2-yl)-11-[(1E)-4-sulfanylbut-1-en-1-yl]-10-oxa-3,17-dithia-7,14,19,20-tetraazatricyclo[14.2.1.1~2,5~]icosa-1(18),16(19)-diene-6,9,13-trione" 
# 
