data_PRDCC_001235
# 
_chem_comp.id                                    PRD_001235 
_chem_comp.name                                  cyclic-tris-valinylselenazole 
_chem_comp.formula                               "C24 H30 N6 O3 Se3" 
_chem_comp.formula_weight                        687.413 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_001235 C1  C1  C  0 1 N N N 69.114 1.276  -3.134  -3.440 -1.286 -0.403 30F 1 C    polymer 1 1 1  ? ? ? 
PRD_001235 C2  C2  C  0 1 N N N 70.037 1.896  -4.094  -2.699 -2.557 -0.299 30F 1 CA   polymer 1 1 2  ? ? ? 
PRD_001235 C3  C3  C  0 1 N N N 71.118 2.664  -3.863  -3.414 -3.701 -0.126 30F 1 C09  polymer 1 1 3  ? ? ? 
PRD_001235 O1  O1  O  0 1 N N N 69.368 1.170  -1.930  -4.655 -1.289 -0.347 30F 1 O    polymer 1 1 4  ? ? ? 
PRD_001235 SE1 SE1 SE 0 0 N N N 72.019 3.221  -5.431  -1.940 -5.028 -0.058 30F 1 SE2  polymer 1 1 5  ? ? ? 
PRD_001235 N1  N1  N  0 1 N N N 69.773 1.635  -5.416  -1.363 -2.544 -0.381 30F 1 N    polymer 1 1 6  ? ? ? 
PRD_001235 N2  N2  N  0 1 N N N 67.915 0.809  -3.700  -2.774 -0.110 -0.556 VAL 2 N    polymer 1 1 7  ? ? ? 
PRD_001235 C4  C4  C  0 1 N N S 66.815 0.129  -3.072  -3.619 1.091  -0.705 VAL 2 CA   polymer 1 1 8  ? ? ? 
PRD_001235 C5  C5  C  0 1 N N N 67.439 -1.197 -3.484  -2.797 2.324  -0.440 VAL 2 C    polymer 1 1 9  ? ? ? 
PRD_001235 C6  C6  C  0 1 N N N 65.397 0.563  -3.574  -4.777 1.026  0.294  VAL 2 CB   polymer 1 1 10 ? ? ? 
PRD_001235 C7  C7  C  0 1 N N N 64.762 0.007  -4.870  -4.219 0.963  1.717  VAL 2 CG1  polymer 1 1 11 ? ? ? 
PRD_001235 C8  C8  C  0 1 N N N 64.367 0.558  -2.447  -5.651 2.273  0.143  VAL 2 CG2  polymer 1 1 12 ? ? ? 
PRD_001235 C9  C9  C  0 1 N N N 68.262 -3.709 -6.118  0.609  3.646  -0.160 30F 3 C    polymer 1 1 13 ? ? ? 
PRD_001235 C10 C10 C  0 1 N N N 68.176 -2.996 -4.825  -0.866 3.628  -0.163 30F 3 CA   polymer 1 1 14 ? ? ? 
PRD_001235 C11 C11 C  0 1 N N N 68.667 -3.438 -3.651  -1.520 4.797  0.075  30F 3 C09  polymer 1 1 15 ? ? ? 
PRD_001235 O2  O2  O  0 1 N N N 68.033 -4.927 -6.244  1.198  4.690  0.041  30F 3 O    polymer 1 1 16 ? ? ? 
PRD_001235 SE2 SE2 SE 0 0 N N N 68.331 -2.259 -2.205  -3.401 4.176  -0.052 30F 3 SE2  polymer 1 1 17 ? ? ? 
PRD_001235 N3  N3  N  0 1 N N N 67.491 -1.765 -4.772  -1.505 2.477  -0.401 30F 3 N    polymer 1 1 18 ? ? ? 
PRD_001235 N4  N4  N  0 1 N N N 68.561 -2.918 -7.261  1.315  2.504  -0.379 VAL 4 N    polymer 1 1 19 ? ? ? 
PRD_001235 C12 C12 C  0 1 N N S 68.630 -3.333 -8.672  2.783  2.655  -0.395 VAL 4 CA   polymer 1 1 20 ? ? ? 
PRD_001235 C13 C13 C  0 1 N N N 70.003 -2.864 -9.098  3.440  1.301  -0.365 VAL 4 C    polymer 1 1 21 ? ? ? 
PRD_001235 C14 C14 C  0 1 N N N 67.365 -2.703 -9.368  3.224  3.461  0.828  VAL 4 CB   polymer 1 1 22 ? ? ? 
PRD_001235 C15 C15 C  0 1 N N N 67.503 -1.228 -9.787  2.912  2.669  2.100  VAL 4 CG1  polymer 1 1 23 ? ? ? 
PRD_001235 C16 C16 C  0 1 N N N 66.147 -2.684 -8.409  4.728  3.727  0.748  VAL 4 CG2  polymer 1 1 24 ? ? ? 
PRD_001235 C17 C17 C  0 1 N N N 71.913 0.189  -8.999  2.870  -2.319 -0.346 30F 5 C    polymer 1 1 25 ? ? ? 
PRD_001235 C18 C18 C  0 1 N N N 71.609 -1.199 -9.238  3.599  -1.040 -0.340 30F 5 CA   polymer 1 1 26 ? ? ? 
PRD_001235 C19 C19 C  0 1 N N N 72.283 -2.160 -9.871  4.960  -1.087 -0.310 30F 5 C09  polymer 1 1 27 ? ? ? 
PRD_001235 O3  O3  O  0 1 N N N 72.890 0.777  -9.469  3.494  -3.362 -0.332 30F 5 O    polymer 1 1 28 ? ? ? 
PRD_001235 SE3 SE3 SE 0 0 N N N 71.356 -3.821 -10.002 5.375  0.853  -0.312 30F 5 SE2  polymer 1 1 29 ? ? ? 
PRD_001235 N5  N5  N  0 1 N N N 70.340 -1.558 -8.842  2.916  0.109  -0.365 30F 5 N    polymer 1 1 30 ? ? ? 
PRD_001235 N6  N6  N  0 1 N N N 70.833 0.718  -8.234  1.512  -2.352 -0.364 VAL 6 N    polymer 1 1 31 ? ? ? 
PRD_001235 C20 C20 C  0 1 N N S 70.569 2.070  -7.790  0.908  -3.699 -0.390 VAL 6 CA   polymer 1 1 32 ? ? ? 
PRD_001235 C21 C21 C  0 1 N N N 70.654 2.238  -6.288  -0.592 -3.590 -0.308 VAL 6 C    polymer 1 1 33 ? ? ? 
PRD_001235 C22 C22 C  0 1 N N N 69.144 2.112  -8.540  1.424  -4.510 0.800  VAL 6 CB   polymer 1 1 34 ? ? ? 
PRD_001235 C23 C23 C  0 1 N N N 67.798 2.245  -7.753  0.878  -3.915 2.099  VAL 6 CG1  polymer 1 1 35 ? ? ? 
PRD_001235 C24 C24 C  0 1 N N N 69.178 2.794  -9.963  0.957  -5.962 0.669  VAL 6 CG2  polymer 1 1 36 ? ? ? 
PRD_001235 H1  H1  H  0 1 N N N 71.443 2.938  -2.870  -4.482 -3.846 -0.048 30F 1 H13  polymer 1 1 37 ? ? ? 
PRD_001235 H2  H2  H  0 1 N N N 67.812 0.974  -4.681  -1.805 -0.064 -0.566 VAL 2 H    polymer 1 1 38 ? ? ? 
PRD_001235 H3  H3  H  0 1 N N N 66.859 0.236  -1.978  -4.017 1.131  -1.719 VAL 2 HA   polymer 1 1 39 ? ? ? 
PRD_001235 H4  H4  H  0 1 N N N 65.528 1.632  -3.796  -5.376 0.137  0.099  VAL 2 HB   polymer 1 1 40 ? ? ? 
PRD_001235 H5  H5  H  0 0 N N N 63.768 0.456  -5.014  -3.701 1.894  1.946  VAL 2 HG11 polymer 1 1 41 ? ? ? 
PRD_001235 H6  H6  H  0 0 N N N 65.404 0.254  -5.728  -5.038 0.820  2.422  VAL 2 HG12 polymer 1 1 42 ? ? ? 
PRD_001235 H7  H7  H  0 0 N N N 64.662 -1.085 -4.790  -3.522 0.129  1.798  VAL 2 HG13 polymer 1 1 43 ? ? ? 
PRD_001235 H8  H8  H  0 0 N N N 63.388 0.868  -2.842  -5.716 2.546  -0.910 VAL 2 HG21 polymer 1 1 44 ? ? ? 
PRD_001235 H9  H9  H  0 0 N N N 64.288 -0.456 -2.027  -6.649 2.065  0.528  VAL 2 HG22 polymer 1 1 45 ? ? ? 
PRD_001235 H10 H10 H  0 0 N N N 64.682 1.258  -1.659  -5.209 3.096  0.705  VAL 2 HG23 polymer 1 1 46 ? ? ? 
PRD_001235 H11 H11 H  0 1 N N N 69.199 -4.372 -3.544  -1.127 5.783  0.276  30F 3 H13  polymer 1 1 47 ? ? ? 
PRD_001235 H12 H12 H  0 1 N N N 68.749 -1.952 -7.083  0.882  1.647  -0.516 VAL 4 H    polymer 1 1 48 ? ? ? 
PRD_001235 H13 H13 H  0 1 N N N 68.571 -4.429 -8.750  3.082  3.182  -1.301 VAL 4 HA   polymer 1 1 49 ? ? ? 
PRD_001235 H14 H14 H  0 1 N N N 67.114 -3.306 -10.253 2.687  4.410  0.850  VAL 4 HB   polymer 1 1 50 ? ? ? 
PRD_001235 H15 H15 H  0 0 N N N 66.568 -0.892 -10.260 3.521  1.765  2.123  VAL 4 HG11 polymer 1 1 51 ? ? ? 
PRD_001235 H16 H16 H  0 0 N N N 67.707 -0.612 -8.899  3.138  3.281  2.973  VAL 4 HG12 polymer 1 1 52 ? ? ? 
PRD_001235 H17 H17 H  0 0 N N N 68.333 -1.126 -10.502 1.857  2.397  2.109  VAL 4 HG13 polymer 1 1 53 ? ? ? 
PRD_001235 H18 H18 H  0 0 N N N 65.282 -2.239 -8.923  4.990  4.029  -0.266 VAL 4 HG21 polymer 1 1 54 ? ? ? 
PRD_001235 H19 H19 H  0 0 N N N 65.904 -3.713 -8.105  4.994  4.523  1.444  VAL 4 HG22 polymer 1 1 55 ? ? ? 
PRD_001235 H20 H20 H  0 0 N N N 66.391 -2.086 -7.518  5.272  2.819  1.009  VAL 4 HG23 polymer 1 1 56 ? ? ? 
PRD_001235 H21 H21 H  0 1 N N N 73.273 -2.010 -10.276 5.624  -1.938 -0.288 30F 5 H13  polymer 1 1 57 ? ? ? 
PRD_001235 H22 H22 H  0 1 N N N 70.146 0.046  -7.959  0.974  -1.544 -0.357 VAL 6 H    polymer 1 1 58 ? ? ? 
PRD_001235 H23 H23 H  0 1 N N N 71.246 2.782  -8.284  1.184  -4.202 -1.317 VAL 6 HA   polymer 1 1 59 ? ? ? 
PRD_001235 H24 H24 H  0 1 N N N 69.073 1.058  -8.846  2.513  -4.479 0.816  VAL 6 HB   polymer 1 1 60 ? ? ? 
PRD_001235 H25 H25 H  0 0 N N N 66.957 2.253  -8.462  1.325  -4.428 2.950  VAL 6 HG11 polymer 1 1 61 ? ? ? 
PRD_001235 H26 H26 H  0 0 N N N 67.690 1.393  -7.066  1.125  -2.854 2.144  VAL 6 HG12 polymer 1 1 62 ? ? ? 
PRD_001235 H27 H27 H  0 0 N N N 67.801 3.182  -7.177  -0.205 -4.037 2.128  VAL 6 HG13 polymer 1 1 63 ? ? ? 
PRD_001235 H28 H28 H  0 0 N N N 68.169 2.780  -10.401 1.183  -6.326 -0.333 VAL 6 HG21 polymer 1 1 64 ? ? ? 
PRD_001235 H29 H29 H  0 0 N N N 69.519 3.835  -9.863  1.474  -6.577 1.405  VAL 6 HG22 polymer 1 1 65 ? ? ? 
PRD_001235 H30 H30 H  0 0 N N N 69.870 2.243  -10.617 -0.118 -6.015 0.841  VAL 6 HG23 polymer 1 1 66 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_001235 SE1 C3  SING N N 1  
PRD_001235 C3  C2  DOUB N Z 2  
PRD_001235 N1  C2  SING N N 3  
PRD_001235 C2  C1  SING N N 4  
PRD_001235 C1  O1  DOUB N N 5  
PRD_001235 C3  H1  SING N N 6  
PRD_001235 N2  C4  SING N N 7  
PRD_001235 N2  H2  SING N N 8  
PRD_001235 C4  C5  SING N N 9  
PRD_001235 C4  C6  SING N N 10 
PRD_001235 C4  H3  SING N N 11 
PRD_001235 C6  C7  SING N N 12 
PRD_001235 C6  C8  SING N N 13 
PRD_001235 C6  H4  SING N N 14 
PRD_001235 C7  H5  SING N N 15 
PRD_001235 C7  H6  SING N N 16 
PRD_001235 C7  H7  SING N N 17 
PRD_001235 C8  H8  SING N N 18 
PRD_001235 C8  H9  SING N N 19 
PRD_001235 C8  H10 SING N N 20 
PRD_001235 SE2 C11 SING N N 21 
PRD_001235 C11 C10 DOUB N Z 22 
PRD_001235 N3  C10 SING N N 23 
PRD_001235 C10 C9  SING N N 24 
PRD_001235 C9  O2  DOUB N N 25 
PRD_001235 C11 H11 SING N N 26 
PRD_001235 N4  C12 SING N N 27 
PRD_001235 N4  H12 SING N N 28 
PRD_001235 C12 C13 SING N N 29 
PRD_001235 C12 C14 SING N N 30 
PRD_001235 C12 H13 SING N N 31 
PRD_001235 C14 C15 SING N N 32 
PRD_001235 C14 C16 SING N N 33 
PRD_001235 C14 H14 SING N N 34 
PRD_001235 C15 H15 SING N N 35 
PRD_001235 C15 H16 SING N N 36 
PRD_001235 C15 H17 SING N N 37 
PRD_001235 C16 H18 SING N N 38 
PRD_001235 C16 H19 SING N N 39 
PRD_001235 C16 H20 SING N N 40 
PRD_001235 SE3 C19 SING N N 41 
PRD_001235 C19 C18 DOUB N Z 42 
PRD_001235 N5  C18 SING N N 43 
PRD_001235 C18 C17 SING N N 44 
PRD_001235 C17 O3  DOUB N N 45 
PRD_001235 C19 H21 SING N N 46 
PRD_001235 N6  C20 SING N N 47 
PRD_001235 N6  H22 SING N N 48 
PRD_001235 C20 C21 SING N N 49 
PRD_001235 C20 C22 SING N N 50 
PRD_001235 C20 H23 SING N N 51 
PRD_001235 C22 C23 SING N N 52 
PRD_001235 C22 C24 SING N N 53 
PRD_001235 C22 H24 SING N N 54 
PRD_001235 C23 H25 SING N N 55 
PRD_001235 C23 H26 SING N N 56 
PRD_001235 C23 H27 SING N N 57 
PRD_001235 C24 H28 SING N N 58 
PRD_001235 C24 H29 SING N N 59 
PRD_001235 C24 H30 SING N N 60 
PRD_001235 C1  N2  SING N N 61 
PRD_001235 SE1 C21 SING N N 62 
PRD_001235 N1  C21 DOUB N N 63 
PRD_001235 C5  N3  DOUB N N 64 
PRD_001235 C5  SE2 SING N N 65 
PRD_001235 C9  N4  SING N N 66 
PRD_001235 C13 SE3 SING N N 67 
PRD_001235 C13 N5  DOUB N N 68 
PRD_001235 C17 N6  SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_001235 SMILES           ACDLabs              12.01 "O=C3NC(c1[se]cc(n1)C(=O)NC(c4nc(C(=O)NC(c2[se]cc3n2)C(C)C)c[se]4)C(C)C)C(C)C"                                                                                                          
PRD_001235 InChI            InChI                1.03  "InChI=1S/C24H30N6O3Se3/c1-10(2)16-22-25-14(7-34-22)20(32)29-18(12(5)6)24-27-15(9-36-24)21(33)30-17(11(3)4)23-26-13(8-35-23)19(31)28-16/h7-12,16-18H,1-6H3,(H,28,31)(H,29,32)(H,30,33)" 
PRD_001235 InChIKey         InChI                1.03  FWRNUSMIPQTUHH-UHFFFAOYSA-N                                                                                                                                                             
PRD_001235 SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@@H]1NC(=O)c2c[se]c(n2)[C@@H](NC(=O)c3c[se]c(n3)[C@@H](NC(=O)c4c[se]c1n4)C(C)C)C(C)C"                                                                                           
PRD_001235 SMILES           CACTVS               3.385 "CC(C)[CH]1NC(=O)c2c[se]c(n2)[CH](NC(=O)c3c[se]c(n3)[CH](NC(=O)c4c[se]c1n4)C(C)C)C(C)C"                                                                                                 
PRD_001235 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)[C@H]1c2nc(c[se]2)C(=O)N[C@H](c3nc(c[se]3)C(=O)N[C@H](c4nc(c[se]4)C(=O)N1)C(C)C)C(C)C"                                                                                            
PRD_001235 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)C1c2nc(c[se]2)C(=O)NC(c3nc(c[se]3)C(=O)NC(c4nc(c[se]4)C(=O)N1)C(C)C)C(C)C"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           PRD_001235 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "(4R,11S,18S)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione" 
# 
