data_PRDCC_900125
# 
_chem_comp.id                                    PRD_900125 
_chem_comp.name                                  "H type 2 antigen, alpha anomer" 
_chem_comp.type                                  saccharide 
_chem_comp.formula                               "C20 H35 N O15" 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.formula_weight                        529.490 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_900125 C1  C1  C 0 1 N N S 28.818 19.538 20.923 -3.766 -1.677 1.010  NDG 1 C1  polymer 1 1 1  ? ? ? 
PRD_900125 C2  C2  C 0 1 N N R 29.421 18.461 20.002 -3.872 -0.533 -0.001 NDG 1 C2  polymer 1 1 2  ? ? ? 
PRD_900125 C3  C3  C 0 1 N N R 30.980 18.457 20.012 -2.491 -0.269 -0.609 NDG 1 C3  polymer 1 1 3  ? ? ? 
PRD_900125 C4  C4  C 0 1 N N S 31.607 19.856 19.953 -1.500 0.041  0.517  NDG 1 C4  polymer 1 1 4  ? ? ? 
PRD_900125 C5  C5  C 0 1 N N R 30.867 20.834 20.901 -1.486 -1.126 1.509  NDG 1 C5  polymer 1 1 5  ? ? ? 
PRD_900125 C6  C6  C 0 1 N N N 31.290 22.289 20.710 -0.543 -0.798 2.668  NDG 1 C6  polymer 1 1 6  ? ? ? 
PRD_900125 C7  C7  C 0 1 N N N 27.758 16.623 19.768 -6.133 -0.703 -0.893 NDG 1 C7  polymer 1 1 7  ? ? ? 
PRD_900125 C8  C8  C 0 1 N N N 27.116 15.428 20.419 -7.100 -1.084 -1.984 NDG 1 C8  polymer 1 1 8  ? ? ? 
PRD_900125 O1  O1  O 0 1 N N N 29.447 20.795 20.760 -2.806 -1.337 2.013  NDG 1 O5  polymer 1 1 9  ? ? ? 
PRD_900125 O2  O2  O 0 1 N N N 31.530 17.688 18.953 -2.566 0.845  -1.500 NDG 1 O3  polymer 1 1 10 ? ? ? 
PRD_900125 O3  O3  O 0 1 N N N 32.996 19.727 20.272 -0.193 0.217  -0.032 NDG 1 O4  polymer 1 1 11 ? ? ? 
PRD_900125 O4  O4  O 0 1 N N N 31.737 22.785 21.958 -0.431 -1.934 3.527  NDG 1 O6  polymer 1 1 12 ? ? ? 
PRD_900125 O5  O5  O 0 1 N N N 27.275 17.063 18.720 -6.545 -0.216 0.139  NDG 1 O7  polymer 1 1 13 ? ? ? 
PRD_900125 N1  N1  N 0 1 N N N 28.835 17.162 20.370 -4.812 -0.904 -1.063 NDG 1 N2  polymer 1 1 14 ? ? ? 
PRD_900125 O6  O6  O 0 1 N Y N 28.974 19.150 22.265 -3.353 -2.869 0.340  NDG 1 O1  polymer 1 1 15 ? ? ? 
PRD_900125 C9  C9  C 0 1 N N R 33.872 20.519 19.441 0.499  1.362  0.470  GAL 2 C1  polymer 1 1 16 ? ? ? 
PRD_900125 C10 C10 C 0 1 N N R 35.309 20.427 19.991 1.925  1.382  -0.088 GAL 2 C2  polymer 1 1 17 ? ? ? 
PRD_900125 C11 C11 C 0 1 N N S 36.356 21.030 19.054 2.640  2.644  0.406  GAL 2 C3  polymer 1 1 18 ? ? ? 
PRD_900125 C12 C12 C 0 1 N N R 36.183 20.433 17.664 1.832  3.874  -0.017 GAL 2 C4  polymer 1 1 19 ? ? ? 
PRD_900125 C13 C13 C 0 1 N N R 34.754 20.775 17.223 0.410  3.758  0.538  GAL 2 C5  polymer 1 1 20 ? ? ? 
PRD_900125 C14 C14 C 0 1 N N N 34.461 20.392 15.794 -0.420 4.954  0.069  GAL 2 C6  polymer 1 1 21 ? ? ? 
PRD_900125 O7  O7  O 0 1 N N N 35.416 21.044 21.261 2.631  0.225  0.364  GAL 2 O2  polymer 1 1 22 ? ? ? 
PRD_900125 O8  O8  O 0 1 N N N 37.653 20.760 19.537 3.947  2.708  -0.168 GAL 2 O3  polymer 1 1 23 ? ? ? 
PRD_900125 O9  O9  O 0 1 N N N 36.482 19.040 17.682 1.784  3.946  -1.444 GAL 2 O4  polymer 1 1 24 ? ? ? 
PRD_900125 O10 O10 O 0 1 N N N 33.784 20.171 18.063 -0.187 2.549  0.065  GAL 2 O5  polymer 1 1 25 ? ? ? 
PRD_900125 O11 O11 O 0 1 N N N 33.105 20.684 15.589 -1.711 4.907  0.680  GAL 2 O6  polymer 1 1 26 ? ? ? 
PRD_900125 C15 C15 C 0 1 N N R 35.842 20.097 22.293 3.602  -0.262 -0.564 FUC 3 C1  polymer 1 1 27 ? ? ? 
PRD_900125 C16 C16 C 0 1 N N S 36.527 20.935 23.354 4.388  -1.410 0.075  FUC 3 C2  polymer 1 1 28 ? ? ? 
PRD_900125 C17 C17 C 0 1 N N R 35.464 21.890 23.938 3.429  -2.561 0.391  FUC 3 C3  polymer 1 1 29 ? ? ? 
PRD_900125 C18 C18 C 0 1 N N S 34.406 21.028 24.620 2.720  -2.989 -0.897 FUC 3 C4  polymer 1 1 30 ? ? ? 
PRD_900125 C19 C19 C 0 1 N N S 33.795 20.065 23.561 1.998  -1.781 -1.499 FUC 3 C5  polymer 1 1 31 ? ? ? 
PRD_900125 C20 C20 C 0 1 N N N 32.623 19.219 24.090 1.337  -2.186 -2.818 FUC 3 C6  polymer 1 1 32 ? ? ? 
PRD_900125 O12 O12 O 0 1 N N N 37.582 21.616 22.728 5.002  -0.954 1.282  FUC 3 O2  polymer 1 1 33 ? ? ? 
PRD_900125 O13 O13 O 0 1 N N N 35.963 22.841 24.856 4.166  -3.665 0.921  FUC 3 O3  polymer 1 1 34 ? ? ? 
PRD_900125 O14 O14 O 0 1 N N N 35.039 20.361 25.705 3.683  -3.484 -1.830 FUC 3 O4  polymer 1 1 35 ? ? ? 
PRD_900125 O15 O15 O 0 1 N N N 34.821 19.302 22.899 2.942  -0.735 -1.740 FUC 3 O5  polymer 1 1 36 ? ? ? 
PRD_900125 H1  H1  H 0 1 N N N 27.748 19.627 20.684 -4.737 -1.840 1.477  NDG 1 H1  polymer 1 1 37 ? ? ? 
PRD_900125 H2  H2  H 0 1 N N N 29.107 18.698 18.975 -4.226 0.367  0.502  NDG 1 H2  polymer 1 1 38 ? ? ? 
PRD_900125 H3  H3  H 0 1 N N N 31.289 18.006 20.966 -2.158 -1.153 -1.155 NDG 1 H3  polymer 1 1 39 ? ? ? 
PRD_900125 H4  H4  H 0 1 N N N 31.501 20.235 18.926 -1.806 0.952  1.031  NDG 1 H4  polymer 1 1 40 ? ? ? 
PRD_900125 H5  H5  H 0 1 N N N 31.127 20.548 21.931 -1.140 -2.028 1.004  NDG 1 H5  polymer 1 1 41 ? ? ? 
PRD_900125 H6  H6  H 0 0 N N N 32.104 22.347 19.973 0.441  -0.540 2.276  NDG 1 H61 polymer 1 1 42 ? ? ? 
PRD_900125 H7  H7  H 0 0 N N N 30.434 22.883 20.358 -0.941 0.046  3.233  NDG 1 H62 polymer 1 1 43 ? ? ? 
PRD_900125 H8  H8  H 0 0 N N N 26.252 15.104 19.820 -8.116 -0.849 -1.668 NDG 1 H81 polymer 1 1 44 ? ? ? 
PRD_900125 H9  H9  H 0 0 N N N 27.847 14.608 20.482 -6.863 -0.526 -2.890 NDG 1 H82 polymer 1 1 45 ? ? ? 
PRD_900125 H10 H10 H 0 0 N N N 26.780 15.698 21.431 -7.019 -2.153 -2.184 NDG 1 H83 polymer 1 1 46 ? ? ? 
PRD_900125 H11 H11 H 0 1 N Y N 32.478 17.715 19.000 -3.181 0.720  -2.236 NDG 1 HO3 polymer 1 1 47 ? ? ? 
PRD_900125 H12 H12 H 0 1 N Y N 32.006 23.691 21.861 0.153  -1.798 4.286  NDG 1 HO6 polymer 1 1 48 ? ? ? 
PRD_900125 H13 H13 H 0 1 N N N 29.263 16.648 21.113 -4.482 -1.293 -1.888 NDG 1 HN2 polymer 1 1 49 ? ? ? 
PRD_900125 H14 H14 H 0 1 N Y N 28.602 19.815 22.833 -3.264 -3.637 0.921  NDG 1 HO1 polymer 1 1 50 ? ? ? 
PRD_900125 H15 H15 H 0 1 N N N 33.566 21.571 19.543 0.535  1.316  1.558  GAL 2 H1  polymer 1 1 51 ? ? ? 
PRD_900125 H16 H16 H 0 1 N N N 35.546 19.358 20.099 1.890  1.387  -1.177 GAL 2 H2  polymer 1 1 52 ? ? ? 
PRD_900125 H17 H17 H 0 1 N N N 36.190 22.116 18.995 2.719  2.616  1.493  GAL 2 H3  polymer 1 1 53 ? ? ? 
PRD_900125 H18 H18 H 0 1 N N N 36.879 20.946 16.984 2.305  4.774  0.378  GAL 2 H4  polymer 1 1 54 ? ? ? 
PRD_900125 H19 H19 H 0 1 N N N 34.647 21.867 17.297 0.445  3.744  1.627  GAL 2 H5  polymer 1 1 55 ? ? ? 
PRD_900125 H20 H20 H 0 1 N N N 35.087 20.978 15.105 0.082  5.879  0.353  GAL 2 H61 polymer 1 1 56 ? ? ? 
PRD_900125 H21 H21 H 0 1 N N N 34.649 19.319 15.639 -0.530 4.918  -1.015 GAL 2 H62 polymer 1 1 57 ? ? ? 
PRD_900125 H22 H22 H 0 1 N Y N 38.296 21.138 18.949 4.457  3.484  0.102  GAL 2 HO3 polymer 1 1 58 ? ? ? 
PRD_900125 H23 H23 H 0 1 N Y N 36.370 18.680 16.810 1.287  4.703  -1.783 GAL 2 HO4 polymer 1 1 59 ? ? ? 
PRD_900125 H24 H24 H 0 1 N Y N 32.864 20.461 14.698 -2.293 5.637  0.428  GAL 2 HO6 polymer 1 1 60 ? ? ? 
PRD_900125 H25 H25 H 0 1 N N N 36.599 19.428 21.857 4.286  0.543  -0.831 FUC 3 H1  polymer 1 1 61 ? ? ? 
PRD_900125 H26 H26 H 0 1 N N N 36.900 20.279 24.155 5.156  -1.755 -0.617 FUC 3 H2  polymer 1 1 62 ? ? ? 
PRD_900125 H27 H27 H 0 1 N N N 34.985 22.411 23.096 2.691  -2.231 1.121  FUC 3 H3  polymer 1 1 63 ? ? ? 
PRD_900125 H28 H28 H 0 1 N N N 33.605 21.683 24.994 1.995  -3.771 -0.672 FUC 3 H4  polymer 1 1 64 ? ? ? 
PRD_900125 H29 H29 H 0 1 N N N 33.356 20.722 22.796 1.236  -1.429 -0.803 FUC 3 H5  polymer 1 1 65 ? ? ? 
PRD_900125 H30 H30 H 0 1 N N N 32.248 18.568 23.287 0.629  -2.994 -2.636 FUC 3 H61 polymer 1 1 66 ? ? ? 
PRD_900125 H31 H31 H 0 1 N N N 32.968 18.601 24.932 0.811  -1.329 -3.238 FUC 3 H62 polymer 1 1 67 ? ? ? 
PRD_900125 H32 H32 H 0 1 N N N 31.815 19.884 24.430 2.101  -2.523 -3.519 FUC 3 H63 polymer 1 1 68 ? ? ? 
PRD_900125 H33 H33 H 0 1 N Y N 38.036 22.154 23.367 5.620  -0.221 1.157  FUC 3 HO2 polymer 1 1 69 ? ? ? 
PRD_900125 H34 H34 H 0 1 N Y N 35.250 23.386 25.167 4.647  -3.463 1.735  FUC 3 HO3 polymer 1 1 70 ? ? ? 
PRD_900125 H35 H35 H 0 1 N Y N 34.406 19.813 26.153 3.303  -3.773 -2.671 FUC 3 HO4 polymer 1 1 71 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_900125 C1  C2  SING N N 1  
PRD_900125 C1  O1  SING N N 2  
PRD_900125 C1  O6  SING N N 3  
PRD_900125 C1  H1  SING N N 4  
PRD_900125 C2  C3  SING N N 5  
PRD_900125 C2  N1  SING N N 6  
PRD_900125 C2  H2  SING N N 7  
PRD_900125 C3  C4  SING N N 8  
PRD_900125 C3  O2  SING N N 9  
PRD_900125 C3  H3  SING N N 10 
PRD_900125 C4  C5  SING N N 11 
PRD_900125 C4  O3  SING N N 12 
PRD_900125 C4  H4  SING N N 13 
PRD_900125 C5  C6  SING N N 14 
PRD_900125 C5  O1  SING N N 15 
PRD_900125 C5  H5  SING N N 16 
PRD_900125 C6  O4  SING N N 17 
PRD_900125 C6  H6  SING N N 18 
PRD_900125 C6  H7  SING N N 19 
PRD_900125 C7  C8  SING N N 20 
PRD_900125 C7  O5  DOUB N N 21 
PRD_900125 C7  N1  SING N N 22 
PRD_900125 C8  H8  SING N N 23 
PRD_900125 C8  H9  SING N N 24 
PRD_900125 C8  H10 SING N N 25 
PRD_900125 O2  H11 SING N N 26 
PRD_900125 O4  H12 SING N N 27 
PRD_900125 N1  H13 SING N N 28 
PRD_900125 O6  H14 SING N N 29 
PRD_900125 C9  C10 SING N N 30 
PRD_900125 C9  O10 SING N N 31 
PRD_900125 C9  H15 SING N N 32 
PRD_900125 C10 C11 SING N N 33 
PRD_900125 C10 O7  SING N N 34 
PRD_900125 C10 H16 SING N N 35 
PRD_900125 C11 C12 SING N N 36 
PRD_900125 C11 O8  SING N N 37 
PRD_900125 C11 H17 SING N N 38 
PRD_900125 C12 C13 SING N N 39 
PRD_900125 C12 O9  SING N N 40 
PRD_900125 C12 H18 SING N N 41 
PRD_900125 C13 C14 SING N N 42 
PRD_900125 C13 O10 SING N N 43 
PRD_900125 C13 H19 SING N N 44 
PRD_900125 C14 O11 SING N N 45 
PRD_900125 C14 H20 SING N N 46 
PRD_900125 C14 H21 SING N N 47 
PRD_900125 O8  H22 SING N N 48 
PRD_900125 O9  H23 SING N N 49 
PRD_900125 O11 H24 SING N N 50 
PRD_900125 C15 C16 SING N N 51 
PRD_900125 C15 O15 SING N N 52 
PRD_900125 C15 H25 SING N N 53 
PRD_900125 C16 C17 SING N N 54 
PRD_900125 C16 O12 SING N N 55 
PRD_900125 C16 H26 SING N N 56 
PRD_900125 C17 C18 SING N N 57 
PRD_900125 C17 O13 SING N N 58 
PRD_900125 C17 H27 SING N N 59 
PRD_900125 C18 C19 SING N N 60 
PRD_900125 C18 O14 SING N N 61 
PRD_900125 C18 H28 SING N N 62 
PRD_900125 C19 C20 SING N N 63 
PRD_900125 C19 O15 SING N N 64 
PRD_900125 C19 H29 SING N N 65 
PRD_900125 C20 H30 SING N N 66 
PRD_900125 C20 H31 SING N N 67 
PRD_900125 C20 H32 SING N N 68 
PRD_900125 O12 H33 SING N N 69 
PRD_900125 O13 H34 SING N N 70 
PRD_900125 O14 H35 SING N N 71 
PRD_900125 O3  C9  SING N N 72 
PRD_900125 O7  C15 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_900125 InChI            InChI                1.06  "InChI=1S/C20H35NO15/c1-5-10(25)13(28)15(30)19(32-5)36-17-14(29)11(26)7(3-22)34-20(17)35-16-8(4-23)33-18(31)9(12(16)27)21-6(2)24/h5,7-20,22-23,25-31H,3-4H2,1-2H3,(H,21,24)/t5-,7+,8+,9+,10+,11-,12+,13+,14-,15-,16+,17+,18-,19-,20-/m0/s1" 
PRD_900125 InChIKey         InChI                1.06  PHTAQVMXYWFMHF-PMTWISEYSA-N                                                                                                                                                                                                                 
PRD_900125 SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]2O[C@H]3[C@H](O)[C@@H](NC(C)=O)[C@@H](O)O[C@@H]3CO)[C@@H](O)[C@H](O)[C@@H]1O"                                                                                                    
PRD_900125 SMILES           CACTVS               3.385 "C[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](CO)O[CH]2O[CH]3[CH](O)[CH](NC(C)=O)[CH](O)O[CH]3CO)[CH](O)[CH](O)[CH]1O"                                                                                                                              
PRD_900125 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@H]([C@H](O[C@H]2O[C@@H]3[C@H](O[C@@H]([C@@H]([C@H]3O)NC(=O)C)O)CO)CO)O)O)O)O)O"                                                                                                       
PRD_900125 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OC2C(C(C(OC2OC3C(OC(C(C3O)NC(=O)C)O)CO)CO)O)O)O)O)O"                                                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           PRD_900125 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        
;~{N}-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3-[(2~{R},
3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2,4-bis(oxidanyl)oxan
-3-yl]ethanamide
;
# 
