data_PRDCC_001236
# 
_chem_comp.id                                    PRD_001236 
_chem_comp.name                                  cyclic-tris-alanylselenazole 
_chem_comp.formula                               "C18 H18 N6 O3 Se3" 
_chem_comp.formula_weight                        603.254 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_001236 C1  C1  C  0 1 N N N 73.638 -0.089 -7.643  -3.636 -0.658 -0.281 30F 1 C   polymer 1 1 1  ? ? ? 
PRD_001236 C2  C2  C  0 1 N N N 73.151 0.395  -6.461  -3.130 -2.038 -0.150 30F 1 CA  polymer 1 1 2  ? ? ? 
PRD_001236 C3  C3  C  0 1 N N N 73.382 1.657  -6.029  -4.037 -3.037 0.019  30F 1 C09 polymer 1 1 3  ? ? ? 
PRD_001236 O1  O1  O  0 1 N N N 74.787 -0.083 -8.026  -4.832 -0.444 -0.252 30F 1 O   polymer 1 1 4  ? ? ? 
PRD_001236 SE1 SE1 SE 0 0 N N N 72.472 1.952  -4.344  -2.817 -4.599 0.130  30F 1 SE2 polymer 1 1 5  ? ? ? 
PRD_001236 N1  N1  N  0 1 N N N 72.412 -0.350 -5.741  -1.812 -2.257 -0.205 30F 1 N   polymer 1 1 6  ? ? ? 
PRD_001236 N2  N2  N  0 1 N N N 72.603 -0.603 -8.381  -2.765 0.377  -0.430 ALA 2 N   polymer 1 1 7  ? ? ? 
PRD_001236 C4  C4  C  0 1 N N S 72.727 -1.215 -9.704  -3.374 1.711  -0.600 ALA 2 CA  polymer 1 1 8  ? ? ? 
PRD_001236 C5  C5  C  0 1 N N N 71.374 -1.237 -10.369 -2.346 2.773  -0.308 ALA 2 C   polymer 1 1 9  ? ? ? 
PRD_001236 C6  C6  C  0 1 N N N 73.234 -2.642 -9.505  -4.551 1.862  0.365  ALA 2 CB  polymer 1 1 10 ? ? ? 
PRD_001236 C7  C7  C  0 1 N N N 68.079 -2.137 -9.747  1.240  3.461  0.001  30F 3 C   polymer 1 1 11 ? ? ? 
PRD_001236 C8  C8  C  0 1 N N N 69.229 -1.687 -10.340 -0.214 3.704  -0.002 30F 3 CA  polymer 1 1 12 ? ? ? 
PRD_001236 C9  C9  C  0 1 N N N 69.182 -1.226 -11.608 -0.650 4.966  0.263  30F 3 C09 polymer 1 1 13 ? ? ? 
PRD_001236 O2  O2  O  0 1 N N N 66.987 -2.081 -10.261 2.003  4.382  0.224  30F 3 O   polymer 1 1 14 ? ? ? 
PRD_001236 SE2 SE2 SE 0 0 N N N 70.947 -0.662 -12.174 -2.611 4.693  0.123  30F 3 SE2 polymer 1 1 15 ? ? ? 
PRD_001236 N3  N3  N  0 1 N N N 70.359 -1.677 -9.741  -1.047 2.692  -0.267 30F 3 N   polymer 1 1 16 ? ? ? 
PRD_001236 N4  N4  N  0 1 N N N 68.262 -2.668 -8.497  1.738  2.220  -0.241 ALA 4 N   polymer 1 1 17 ? ? ? 
PRD_001236 C10 C10 C  0 1 N N S 67.190 -3.211 -7.656  3.211  2.113  -0.253 ALA 4 CA  polymer 1 1 18 ? ? ? 
PRD_001236 C11 C11 C  0 1 N N N 66.889 -2.169 -6.627  3.617  0.665  -0.186 ALA 4 C   polymer 1 1 19 ? ? ? 
PRD_001236 C12 C12 C  0 1 N N N 67.696 -4.480 -6.971  3.784  2.859  0.955  ALA 4 CB  polymer 1 1 20 ? ? ? 
PRD_001236 C13 C13 C  0 1 N N N 68.600 -0.477 -4.167  2.401  -2.790 -0.102 30F 5 C   polymer 1 1 21 ? ? ? 
PRD_001236 C14 C14 C  0 1 N N N 67.595 -0.910 -4.989  3.352  -1.665 -0.112 30F 5 CA  polymer 1 1 22 ? ? ? 
PRD_001236 C15 C15 C  0 1 N N N 66.337 -0.413 -4.922  4.681  -1.955 -0.060 30F 5 C09 polymer 1 1 23 ? ? ? 
PRD_001236 O3  O3  O  0 1 N N N 68.473 0.329  -3.275  2.824  -3.929 -0.055 30F 5 O   polymer 1 1 24 ? ? ? 
PRD_001236 SE3 SE3 SE 0 0 N N N 65.219 -1.266 -6.260  5.439  -0.122 -0.097 30F 5 SE2 polymer 1 1 25 ? ? ? 
PRD_001236 N5  N5  N  0 1 N N N 67.826 -1.793 -5.874  2.887  -0.412 -0.170 30F 5 N   polymer 1 1 26 ? ? ? 
PRD_001236 N6  N6  N  0 1 N N N 69.810 -1.042 -4.484  1.059  -2.576 -0.143 ALA 6 N   polymer 1 1 27 ? ? ? 
PRD_001236 C16 C16 C  0 1 N N S 71.087 -0.802 -3.810  0.223  -3.792 -0.158 ALA 6 CA  polymer 1 1 28 ? ? ? 
PRD_001236 C17 C17 C  0 1 N N N 71.940 0.107  -4.658  -1.235 -3.420 -0.106 ALA 6 C   polymer 1 1 29 ? ? ? 
PRD_001236 C18 C18 C  0 1 N N N 71.751 -2.182 -3.683  0.568  -4.659 1.055  ALA 6 CB  polymer 1 1 30 ? ? ? 
PRD_001236 H1  H1  H  0 1 N N N 73.984 2.390  -6.546  -5.115 -2.994 0.077  30F 1 H13 polymer 1 1 31 ? ? ? 
PRD_001236 H2  H2  H  0 1 N N N 71.687 -0.556 -7.982  -1.804 0.246  -0.425 ALA 2 H   polymer 1 1 32 ? ? ? 
PRD_001236 H3  H3  H  0 1 N N N 73.440 -0.652 -10.324 -3.728 1.821  -1.625 ALA 2 HA  polymer 1 1 33 ? ? ? 
PRD_001236 H4  H4  H  0 1 N N N 73.339 -3.134 -10.483 -4.282 1.442  1.334  ALA 2 HB1 polymer 1 1 34 ? ? ? 
PRD_001236 H5  H5  H  0 1 N N N 74.211 -2.617 -9.000  -4.794 2.918  0.481  ALA 2 HB2 polymer 1 1 35 ? ? ? 
PRD_001236 H6  H6  H  0 1 N N N 72.517 -3.203 -8.888  -5.417 1.332  -0.033 ALA 2 HB3 polymer 1 1 36 ? ? ? 
PRD_001236 H7  H7  H  0 1 N N N 68.292 -1.179 -12.217 -0.089 5.861  0.486  30F 3 H13 polymer 1 1 37 ? ? ? 
PRD_001236 H8  H8  H  0 1 N N N 69.193 -2.687 -8.132  1.164  1.454  -0.397 ALA 4 H   polymer 1 1 38 ? ? ? 
PRD_001236 H9  H9  H  0 1 N N N 66.294 -3.435 -8.254  3.600  2.557  -1.169 ALA 4 HA  polymer 1 1 39 ? ? ? 
PRD_001236 H10 H10 H  0 1 N N N 66.900 -4.897 -6.337  3.193  2.626  1.840  ALA 4 HB1 polymer 1 1 40 ? ? ? 
PRD_001236 H11 H11 H  0 1 N N N 67.982 -5.219 -7.734  4.817  2.549  1.116  ALA 4 HB2 polymer 1 1 41 ? ? ? 
PRD_001236 H12 H12 H  0 1 N N N 68.571 -4.237 -6.350  3.752  3.932  0.768  ALA 4 HB3 polymer 1 1 42 ? ? ? 
PRD_001236 H13 H13 H  0 1 N N N 66.005 0.345  -4.228  5.180  -2.911 -0.010 30F 5 H13 polymer 1 1 43 ? ? ? 
PRD_001236 H14 H14 H  0 1 N N N 69.820 -1.682 -5.252  0.678  -1.684 -0.161 ALA 6 H   polymer 1 1 44 ? ? ? 
PRD_001236 H15 H15 H  0 1 N N N 70.932 -0.364 -2.813  0.420  -4.355 -1.070 ALA 6 HA  polymer 1 1 45 ? ? ? 
PRD_001236 H16 H16 H  0 1 N N N 72.724 -2.076 -3.181  0.379  -4.097 1.969  ALA 6 HB1 polymer 1 1 46 ? ? ? 
PRD_001236 H17 H17 H  0 1 N N N 71.104 -2.847 -3.092  -0.049 -5.557 1.046  ALA 6 HB2 polymer 1 1 47 ? ? ? 
PRD_001236 H18 H18 H  0 1 N N N 71.900 -2.611 -4.685  1.620  -4.940 1.013  ALA 6 HB3 polymer 1 1 48 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_001236 SE1 C3  SING N N 1  
PRD_001236 C3  C2  DOUB N Z 2  
PRD_001236 N1  C2  SING N N 3  
PRD_001236 C2  C1  SING N N 4  
PRD_001236 C1  O1  DOUB N N 5  
PRD_001236 C3  H1  SING N N 6  
PRD_001236 N2  C4  SING N N 7  
PRD_001236 N2  H2  SING N N 8  
PRD_001236 C4  C5  SING N N 9  
PRD_001236 C4  C6  SING N N 10 
PRD_001236 C4  H3  SING N N 11 
PRD_001236 C6  H4  SING N N 12 
PRD_001236 C6  H5  SING N N 13 
PRD_001236 C6  H6  SING N N 14 
PRD_001236 SE2 C9  SING N N 15 
PRD_001236 C9  C8  DOUB N Z 16 
PRD_001236 N3  C8  SING N N 17 
PRD_001236 C8  C7  SING N N 18 
PRD_001236 C7  O2  DOUB N N 19 
PRD_001236 C9  H7  SING N N 20 
PRD_001236 N4  C10 SING N N 21 
PRD_001236 N4  H8  SING N N 22 
PRD_001236 C10 C11 SING N N 23 
PRD_001236 C10 C12 SING N N 24 
PRD_001236 C10 H9  SING N N 25 
PRD_001236 C12 H10 SING N N 26 
PRD_001236 C12 H11 SING N N 27 
PRD_001236 C12 H12 SING N N 28 
PRD_001236 SE3 C15 SING N N 29 
PRD_001236 C15 C14 DOUB N Z 30 
PRD_001236 N5  C14 SING N N 31 
PRD_001236 C14 C13 SING N N 32 
PRD_001236 C13 O3  DOUB N N 33 
PRD_001236 C15 H13 SING N N 34 
PRD_001236 N6  C16 SING N N 35 
PRD_001236 N6  H14 SING N N 36 
PRD_001236 C16 C17 SING N N 37 
PRD_001236 C16 C18 SING N N 38 
PRD_001236 C16 H15 SING N N 39 
PRD_001236 C18 H16 SING N N 40 
PRD_001236 C18 H17 SING N N 41 
PRD_001236 C18 H18 SING N N 42 
PRD_001236 C1  N2  SING N N 43 
PRD_001236 SE1 C17 SING N N 44 
PRD_001236 N1  C17 DOUB N N 45 
PRD_001236 C5  SE2 SING N N 46 
PRD_001236 C5  N3  DOUB N N 47 
PRD_001236 C7  N4  SING N N 48 
PRD_001236 C11 SE3 SING N N 49 
PRD_001236 C11 N5  DOUB N N 50 
PRD_001236 C13 N6  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_001236 SMILES           ACDLabs              12.01 "O=C3NC(c1[se]cc(n1)C(=O)NC(c4nc(C(=O)NC(c2[se]cc3n2)C)c[se]4)C)C"                                                                                            
PRD_001236 InChI            InChI                1.03  "InChI=1S/C18H18N6O3Se3/c1-7-16-22-11(4-28-16)14(26)20-9(3)18-24-12(6-30-18)15(27)21-8(2)17-23-10(5-29-17)13(25)19-7/h4-9H,1-3H3,(H,19,25)(H,20,26)(H,21,27)" 
PRD_001236 InChIKey         InChI                1.03  PMCFXJCCKCUNTO-UHFFFAOYSA-N                                                                                                                                   
PRD_001236 SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1NC(=O)c2c[se]c(n2)[C@H](C)NC(=O)c3c[se]c(n3)[C@H](C)NC(=O)c4c[se]c1n4"                                                                               
PRD_001236 SMILES           CACTVS               3.385 "C[CH]1NC(=O)c2c[se]c(n2)[CH](C)NC(=O)c3c[se]c(n3)[CH](C)NC(=O)c4c[se]c1n4"                                                                                   
PRD_001236 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1c2nc(c[se]2)C(=O)N[C@H](c3nc(c[se]3)C(=O)N[C@H](c4nc(c[se]4)C(=O)N1)C)C"                                                                              
PRD_001236 SMILES           "OpenEye OEToolkits" 1.7.6 "CC1c2nc(c[se]2)C(=O)NC(c3nc(c[se]3)C(=O)NC(c4nc(c[se]4)C(=O)N1)C)C"                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           PRD_001236 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "(4R,11S,18S)-4,11,18-trimethyl-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione" 
# 
