data_PRDCC_900026
# 
_chem_comp.id                                    PRD_900026 
_chem_comp.name                                  "HEPARIN DISACCHARIDE I-S" 
_chem_comp.type                                  saccharide 
_chem_comp.formula                               "C12 H15 N O19 S3" 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.formula_weight                        573.438 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_900026 C10 C10 C 0  1 N N S 17.826 7.465  32.230 -3.218 1.508  0.210  C1  SGN 1  1 1 polymer 1 ? ? ? 
PRD_900026 C8  C8  C 0  1 N N R 17.902 6.234  33.153 -3.354 -0.014 0.299  C2  SGN 2  1 1 polymer 1 ? ? ? 
PRD_900026 C4  C4  C 0  1 N N R 17.578 6.681  34.581 -2.094 -0.592 0.950  C3  SGN 3  1 1 polymer 1 ? ? ? 
PRD_900026 C1  C1  C 0  1 N N S 18.604 7.744  35.047 -0.870 -0.091 0.175  C4  SGN 4  1 1 polymer 1 ? ? ? 
PRD_900026 C2  C2  C 0  1 N N R 18.562 8.923  34.009 -0.920 1.436  0.096  C5  SGN 5  1 1 polymer 1 ? ? ? 
PRD_900026 C6  C6  C 0  1 N N N 19.597 10.006 34.392 0.316  1.946  -0.647 C6  SGN 6  1 1 polymer 1 ? ? ? 
PRD_900026 N14 N14 N 0  1 N N N 16.931 5.233  32.726 -4.526 -0.354 1.110  N   SGN 7  1 1 polymer 1 ? ? ? 
PRD_900026 O15 O15 O 0  1 N N N 16.495 8.016  32.257 -3.035 2.046  1.521  O1  SGN 8  1 1 polymer 1 ? ? ? 
PRD_900026 O9  O9  O 0  1 N N N 17.625 5.571  35.485 -2.139 -2.019 0.905  O3  SGN 9  1 1 polymer 1 ? ? ? 
PRD_900026 O3  O3  O 0  1 N N N 18.409 8.245  36.398 0.323  -0.496 0.851  O4  SGN 10 1 1 polymer 1 ? ? ? 
PRD_900026 O5  O5  O 0  1 N N N 18.783 8.478  32.639 -2.095 1.845  -0.602 O5  SGN 11 1 1 polymer 1 ? ? ? 
PRD_900026 O11 O11 O 0  1 N N N 20.894 9.715  33.851 0.335  3.375  -0.615 O6  SGN 12 1 1 polymer 1 ? ? ? 
PRD_900026 S20 S20 S 0  1 N N N 17.386 3.649  32.636 -5.976 -0.674 0.377  S1  SGN 13 1 1 polymer 1 ? ? ? 
PRD_900026 O28 O28 O 0  1 N N N 17.659 3.154  33.941 -5.784 -1.885 -0.405 O1S SGN 14 1 1 polymer 1 ? ? ? 
PRD_900026 O29 O29 O 0  1 N N N 16.333 2.889  32.058 -6.946 -0.854 1.446  O2S SGN 15 1 1 polymer 1 ? ? ? 
PRD_900026 O30 O30 O -1 1 N N N 18.744 3.525  31.692 -6.278 0.480  -0.456 O3S SGN 16 1 1 polymer 1 ? ? ? 
PRD_900026 S16 S16 S 0  1 N N N 21.952 10.298 34.806 1.583  3.815  -1.368 S2  SGN 17 1 1 polymer 1 ? ? ? 
PRD_900026 O21 O21 O 0  1 N N N 21.850 9.682  36.091 1.300  3.623  -2.781 O4S SGN 18 1 1 polymer 1 ? ? ? 
PRD_900026 O22 O22 O 0  1 N N N 23.241 10.041 34.284 1.794  5.214  -1.031 O5S SGN 19 1 1 polymer 1 ? ? ? 
PRD_900026 O23 O23 O -1 1 N N N 21.744 11.939 34.961 2.666  2.964  -0.900 O6S SGN 20 1 1 polymer 1 ? ? ? 
PRD_900026 S26 S26 S 0  1 N N N 14.095 8.167  38.026 3.839  -0.465 2.398  S   UAP 21 2 1 polymer 1 ? ? ? 
PRD_900026 C7  C7  C 0  1 N N R 17.081 8.840  36.581 1.245  -0.916 -0.157 C1  UAP 22 2 1 polymer 1 ? ? ? 
PRD_900026 C12 C12 C 0  1 N N R 16.533 8.572  38.015 2.629  -1.131 0.472  C2  UAP 23 2 1 polymer 1 ? ? ? 
PRD_900026 O18 O18 O 0  1 N N N 15.233 9.199  38.134 3.012  0.026  1.218  O2  UAP 24 2 1 polymer 1 ? ? ? 
PRD_900026 C17 C17 C 0  1 N N S 17.499 9.228  39.057 3.623  -1.366 -0.674 C3  UAP 25 2 1 polymer 1 ? ? ? 
PRD_900026 O25 O25 O 0  1 N N N 18.641 8.383  39.252 4.815  -1.968 -0.164 O3  UAP 26 2 1 polymer 1 ? ? ? 
PRD_900026 C24 C24 C 0  1 N N N 17.970 10.611 38.609 2.976  -2.288 -1.675 C4  UAP 27 2 1 polymer 1 ? ? ? 
PRD_900026 C19 C19 C 0  1 N N N 17.781 11.065 37.347 1.688  -2.581 -1.636 C5  UAP 28 2 1 polymer 1 ? ? ? 
PRD_900026 O13 O13 O 0  1 N N N 17.156 10.296 36.402 0.796  -2.138 -0.733 O5  UAP 29 2 1 polymer 1 ? ? ? 
PRD_900026 C27 C27 C 0  1 N N N 18.232 12.409 36.961 1.180  -3.479 -2.684 C6  UAP 30 2 1 polymer 1 ? ? ? 
PRD_900026 O31 O31 O 0  1 N N N 12.869 8.830  38.306 5.141  -0.831 1.862  O1S UAP 31 2 1 polymer 1 ? ? ? 
PRD_900026 O32 O32 O 0  1 N N N 14.038 7.626  36.705 3.919  0.645  3.334  O2S UAP 32 2 1 polymer 1 ? ? ? 
PRD_900026 O33 O33 O -1 1 N N N 14.315 6.943  39.128 3.128  -1.607 2.952  O3S UAP 33 2 1 polymer 1 ? ? ? 
PRD_900026 O34 O34 O -1 1 N N N 17.702 12.970 36.025 -0.003 -3.789 -2.704 O61 UAP 34 2 1 polymer 1 ? ? ? 
PRD_900026 O35 O35 O 0  1 N N N 19.255 13.054 37.667 1.941  -3.917 -3.537 O62 UAP 35 2 1 polymer 1 ? ? ? 
PRD_900026 H10 H10 H 0  1 N N N 18.075 7.141  31.192 -4.123 1.928  -0.231 H1  SGN 36 1 1 polymer 1 ? ? ? 
PRD_900026 H8  H8  H 0  1 N N N 18.923 5.788  33.108 -3.471 -0.428 -0.702 H2  SGN 37 1 1 polymer 1 ? ? ? 
PRD_900026 H4  H4  H 0  1 N N N 16.550 7.113  34.582 -2.032 -0.260 1.986  H3  SGN 38 1 1 polymer 1 ? ? ? 
PRD_900026 H1  H1  H 0  1 N N N 19.602 7.249  35.086 -0.879 -0.510 -0.831 H4  SGN 39 1 1 polymer 1 ? ? ? 
PRD_900026 H2  H2  H 0  1 N N N 17.534 9.354  34.048 -0.934 1.851  1.104  H5  SGN 40 1 1 polymer 1 ? ? ? 
PRD_900026 H61 1H6 H 0  1 N N N 19.641 10.154 35.496 1.215  1.560  -0.165 H61 SGN 41 1 1 polymer 1 ? ? ? 
PRD_900026 H62 2H6 H 0  1 N N N 19.251 11.023 34.094 0.284  1.606  -1.682 H62 SGN 42 1 1 polymer 1 ? ? ? 
PRD_900026 H14 H14 H 0  1 N N N 16.549 5.514  31.823 -4.452 -0.393 2.076  HN  SGN 43 1 1 polymer 1 ? ? ? 
PRD_900026 H15 H15 H 0  1 N N N 15.869 7.353  31.990 -2.956 3.005  1.422  HO1 SGN 44 1 1 polymer 1 ? ? ? 
PRD_900026 HO9 HO9 H 0  1 N N N 16.996 4.919  35.199 -2.923 -2.290 1.403  HO3 SGN 45 1 1 polymer 1 ? ? ? 
PRD_900026 H7  H7  H 0  1 N N N 16.403 8.377  35.826 1.313  -0.152 -0.931 H1  UAP 46 2 1 polymer 1 ? ? ? 
PRD_900026 H12 H12 H 0  1 N N N 16.457 7.475  38.200 2.605  -2.003 1.127  H2  UAP 47 2 1 polymer 1 ? ? ? 
PRD_900026 H17 H17 H 0  1 N N N 16.934 9.348  40.011 3.865  -0.417 -1.150 H3  UAP 48 2 1 polymer 1 ? ? ? 
PRD_900026 H25 H25 H 0  1 N N N 19.227 8.781  39.885 5.399  -2.114 -0.921 HO3 UAP 49 2 1 polymer 1 ? ? ? 
PRD_900026 H24 H24 H 0  1 N N N 18.490 11.343 39.250 3.586  -2.725 -2.452 H4  UAP 50 2 1 polymer 1 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_900026 C1  C2  SING N N 1  
PRD_900026 C1  O3  SING N N 2  
PRD_900026 C1  C4  SING N N 3  
PRD_900026 C1  H1  SING N N 4  
PRD_900026 C2  O5  SING N N 5  
PRD_900026 C2  C6  SING N N 6  
PRD_900026 C2  H2  SING N N 7  
PRD_900026 O3  C7  SING N N 8  
PRD_900026 C4  C8  SING N N 9  
PRD_900026 C4  O9  SING N N 10 
PRD_900026 C4  H4  SING N N 11 
PRD_900026 O5  C10 SING N N 12 
PRD_900026 C6  O11 SING N N 13 
PRD_900026 C6  H61 SING N N 14 
PRD_900026 C6  H62 SING N N 15 
PRD_900026 C7  C12 SING N N 16 
PRD_900026 C7  O13 SING N N 17 
PRD_900026 C7  H7  SING N N 18 
PRD_900026 C8  C10 SING N N 19 
PRD_900026 C8  N14 SING N N 20 
PRD_900026 C8  H8  SING N N 21 
PRD_900026 O9  HO9 SING N N 22 
PRD_900026 C10 O15 SING N N 23 
PRD_900026 C10 H10 SING N N 24 
PRD_900026 O11 S16 SING N N 25 
PRD_900026 C12 C17 SING N N 26 
PRD_900026 C12 O18 SING N N 27 
PRD_900026 C12 H12 SING N N 28 
PRD_900026 O13 C19 SING N N 29 
PRD_900026 N14 S20 SING N N 30 
PRD_900026 N14 H14 SING N N 31 
PRD_900026 O15 H15 SING N N 32 
PRD_900026 S16 O21 DOUB N N 33 
PRD_900026 S16 O22 DOUB N N 34 
PRD_900026 S16 O23 SING N N 35 
PRD_900026 C17 C24 SING N N 36 
PRD_900026 C17 O25 SING N N 37 
PRD_900026 C17 H17 SING N N 38 
PRD_900026 O18 S26 SING N N 39 
PRD_900026 C19 C24 DOUB N N 40 
PRD_900026 C19 C27 SING N N 41 
PRD_900026 S20 O28 DOUB N N 42 
PRD_900026 S20 O29 DOUB N N 43 
PRD_900026 S20 O30 SING N N 44 
PRD_900026 C24 H24 SING N N 45 
PRD_900026 O25 H25 SING N N 46 
PRD_900026 S26 O31 DOUB N N 47 
PRD_900026 S26 O32 DOUB N N 48 
PRD_900026 S26 O33 SING N N 49 
PRD_900026 C27 O34 SING N N 50 
PRD_900026 C27 O35 DOUB N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_900026 SMILES           ACDLabs              12.01 "[O-]S(=O)(=O)OC2C(O)C=C(OC2OC1C(OC(O)C(NS([O-])(=O)=O)C1O)COS([O-])(=O)=O)C([O-])=O"                                                                                                                                                   
PRD_900026 InChI            InChI                1.03  
;InChI=1S/C12H19NO19S3/c14-3-1-4(10(16)17)30-12(8(3)32-35(25,26)27)31-9-5(2-28-34(22,23)24)29-11(18)6(7(9)15)13-33(19,20
)21/h1,3,5-9,11-15,18H,2H2,(H,16,17)(H,19,20,21)(H,22,23,24)(H,25,26,27)/p-4/t3-,5+,6+,7+,8+,9+,11-,12-/m0/s1
;
PRD_900026 InChIKey         InChI                1.03  LRPGJWKAYQRIAQ-GYBHJADLSA-J                                                                                                                                                                                                             
PRD_900026 SMILES_CANONICAL CACTVS               3.370 
;O[C@H]1O[C@H](CO[S]([O-])(=O)=O)[C@@H](O[C@@H]2OC(=C[C@H](O)[C@H]2O[S]([O-])(=O)=O)C([O-])=O)[C@H](O)[C@H]1N[S]([O-])(=
O)=O
;
PRD_900026 SMILES           CACTVS               3.370 "O[CH]1O[CH](CO[S]([O-])(=O)=O)[CH](O[CH]2OC(=C[CH](O)[CH]2O[S]([O-])(=O)=O)C([O-])=O)[CH](O)[CH]1N[S]([O-])(=O)=O"                                                                                                                     
PRD_900026 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 
;C1=C(O[C@H]([C@@H]([C@H]1O)OS(=O)(=O)[O-])O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)NS(=O)(=O)[O-])O)COS(=O)(=O)[O-])C(=O)[O
-]
;
PRD_900026 SMILES           "OpenEye OEToolkits" 1.7.2 "C1=C(OC(C(C1O)OS(=O)(=O)[O-])OC2C(OC(C(C2O)NS(=O)(=O)[O-])O)COS(=O)(=O)[O-])C(=O)[O-]"                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_900026 "SYSTEMATIC NAME" ACDLabs              12.01 
;2-deoxy-4-O-(4-deoxy-2-O-sulfonato-alpha-L-threo-hex-4-enopyranuronosyl)-6-O-sulfonato-2-(sulfonatoamino)-alpha-D-gluco
pyranose
;
PRD_900026 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 
;(2R,3R,4S)-2-[(2R,3S,4R,5R,6S)-4,6-bis(oxidanyl)-5-(sulfonatoamino)-2-(sulfonatooxymethyl)oxan-3-yl]oxy-4-oxidanyl-3-su
lfonatooxy-3,4-dihydro-2H-pyran-6-carboxylate
;
# 
