data_PRDCC_900036
# 
_chem_comp.id                                    PRD_900036 
_chem_comp.name                                  "6-DEOXY-ALPHA-L-IDOPYRANOSYL-(1->2)-ALPHA-D-GLUCOPYRANOSYL-(1->4)-2-(ACETYLAMINO)-2-DEOXY-BETA-L-GULOPYRANOSE" 
_chem_comp.type                                  saccharide 
_chem_comp.formula                               "C20 H35 N O15" 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.formula_weight                        529.490 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_900036 CBI    C5  C 0 1 N N R 17.799 69.252 47.381 -3.754 1.576  -0.979 NAG 1 C1  polymer 1 1 1  ? ? ? 
PRD_900036 CBS    C2  C 0 1 N N R 19.131 68.567 47.064 -3.846 0.534  0.139  NAG 1 C2  polymer 1 1 2  ? ? ? 
PRD_900036 CBV    C1  C 0 1 N N R 18.910 67.212 46.384 -2.453 0.315  0.738  NAG 1 C3  polymer 1 1 3  ? ? ? 
PRD_900036 CBU    C8  C 0 1 N N S 17.776 66.373 46.958 -1.492 -0.111 -0.376 NAG 1 C4  polymer 1 1 4  ? ? ? 
PRD_900036 CBK    C6  C 0 1 N N R 16.557 67.234 47.259 -1.491 0.955  -1.474 NAG 1 C5  polymer 1 1 5  ? ? ? 
PRD_900036 CAV    C7  C 0 1 N N N 15.491 66.400 47.973 -0.579 0.508  -2.619 NAG 1 C6  polymer 1 1 6  ? ? ? 
PRD_900036 CBF    C3  C 0 1 N N N 21.219 69.548 46.193 -6.083 0.807  1.065  NAG 1 C7  polymer 1 1 7  ? ? ? 
PRD_900036 CAB    C4  C 0 1 N N N 21.821 70.391 45.067 -7.020 1.301  2.137  NAG 1 C8  polymer 1 1 8  ? ? ? 
PRD_900036 NAX    N1  N 0 1 N N N 19.894 69.435 46.155 -4.757 1.014  1.182  NAG 1 N2  polymer 1 1 9  ? ? ? 
PRD_900036 OAH    O3  O 0 1 N N N 18.107 70.351 48.242 -5.040 1.744  -1.580 NAG 1 O1  polymer 1 1 10 ? ? ? 
PRD_900036 OAZ    O1  O 0 1 N N N 20.141 66.492 46.194 -2.516 -0.709 1.733  NAG 1 O3  polymer 1 1 11 ? ? ? 
PRD_900036 "O1'"  O6  O 0 1 N N N 17.406 65.316 46.059 -0.174 -0.249 0.158  NAG 1 O4  polymer 1 1 12 ? ? ? 
PRD_900036 OBA    O4  O 0 1 N N N 16.927 68.351 48.083 -2.821 1.132  -1.966 NAG 1 O5  polymer 1 1 13 ? ? ? 
PRD_900036 OAG    O5  O 0 1 N N N 16.012 65.911 49.211 -0.492 1.550  -3.593 NAG 1 O6  polymer 1 1 14 ? ? ? 
PRD_900036 OAD    O2  O 0 1 N N N 21.944 68.945 46.984 -6.523 0.223  0.097  NAG 1 O7  polymer 1 1 15 ? ? ? 
PRD_900036 "C1'"  C9  C 0 1 N N S 17.883 64.050 46.540 0.555  -1.357 -0.372 GAL 2 C1  polymer 1 1 16 ? ? ? 
PRD_900036 "C2'"  C14 C 0 1 N N R 16.975 62.961 45.989 1.993  -1.321 0.153  GAL 2 C2  polymer 1 1 17 ? ? ? 
PRD_900036 "C3'"  C13 C 0 1 N N S 17.485 61.625 46.539 2.751  -2.545 -0.371 GAL 2 C3  polymer 1 1 18 ? ? ? 
PRD_900036 "C4'"  C12 C 0 1 N N R 18.951 61.416 46.153 2.007  -3.814 0.057  GAL 2 C4  polymer 1 1 19 ? ? ? 
PRD_900036 "C5'"  C10 C 0 1 N N R 19.780 62.614 46.624 0.569  -3.754 -0.465 GAL 2 C5  polymer 1 1 20 ? ? ? 
PRD_900036 "C6'"  C11 C 0 1 N N N 21.232 62.457 46.166 -0.198 -4.990 0.010  GAL 2 C6  polymer 1 1 21 ? ? ? 
PRD_900036 "O2'"  O11 O 0 1 N N N 15.633 63.212 46.432 2.638  -0.130 -0.301 GAL 2 O2  polymer 1 1 22 ? ? ? 
PRD_900036 "O3'"  O10 O 0 1 N N N 16.695 60.554 46.015 4.072  -2.559 0.174  GAL 2 O3  polymer 1 1 23 ? ? ? 
PRD_900036 "O4'"  O9  O 0 1 N N N 19.054 61.286 44.732 1.994  -3.902 1.484  GAL 2 O4  polymer 1 1 24 ? ? ? 
PRD_900036 "O5'"  O7  O 0 1 N N N 19.228 63.825 46.081 -0.069 -2.577 0.035  GAL 2 O5  polymer 1 1 25 ? ? ? 
PRD_900036 "O6'"  O8  O 0 1 N N N 21.999 63.579 46.609 -1.504 -4.992 -0.571 GAL 2 O6  polymer 1 1 26 ? ? ? 
PRD_900036 CBQ    C15 C 0 1 N N S 14.668 62.736 45.481 3.582  0.410  0.625  FUC 3 C1  polymer 1 1 27 ? ? ? 
PRD_900036 CBO    C20 C 0 1 N N S 13.263 62.950 46.049 4.418  1.490  -0.067 FUC 3 C2  polymer 1 1 28 ? ? ? 
PRD_900036 CBN    C19 C 0 1 N N R 12.969 64.444 46.204 3.497  2.631  -0.510 FUC 3 C3  polymer 1 1 29 ? ? ? 
PRD_900036 CBL    C18 C 0 1 N N S 13.217 65.174 44.882 2.747  3.170  0.712  FUC 3 C4  polymer 1 1 30 ? ? ? 
PRD_900036 CBH    C16 C 0 1 N N S 14.629 64.864 44.377 1.976  2.025  1.374  FUC 3 C5  polymer 1 1 31 ? ? ? 
PRD_900036 CAC    C17 C 0 1 N N N 14.875 65.552 43.033 1.272  2.544  2.630  FUC 3 C6  polymer 1 1 32 ? ? ? 
PRD_900036 OAL    O15 O 0 1 N N N 13.137 62.289 47.311 5.068  0.930  -1.210 FUC 3 O2  polymer 1 1 33 ? ? ? 
PRD_900036 OAK    O14 O 0 1 N N N 11.607 64.625 46.601 4.277  3.677  -1.092 FUC 3 O3  polymer 1 1 34 ? ? ? 
PRD_900036 OAI    O13 O 0 1 N N N 12.248 64.759 43.915 3.682  3.718  1.643  FUC 3 O4  polymer 1 1 35 ? ? ? 
PRD_900036 OBB    O12 O 0 1 N N N 14.800 63.443 44.234 2.887  0.985  1.734  FUC 3 O5  polymer 1 1 36 ? ? ? 
PRD_900036 HBI    H8  H 0 1 N N N 17.333 69.601 46.448 -3.419 2.526  -0.564 NAG 1 H1  polymer 1 1 37 ? ? ? 
PRD_900036 HBS    H3  H 0 1 N N N 19.691 68.415 47.998 -4.219 -0.405 -0.268 NAG 1 H2  polymer 1 1 38 ? ? ? 
PRD_900036 HBV    H2  H 0 1 N N N 18.570 67.471 45.371 -2.099 1.242  1.190  NAG 1 H3  polymer 1 1 39 ? ? ? 
PRD_900036 HBU    H14 H 0 1 N N N 18.124 65.935 47.905 -1.818 -1.064 -0.793 NAG 1 H4  polymer 1 1 40 ? ? ? 
PRD_900036 HBK    H10 H 0 1 N N N 16.139 67.595 46.308 -1.127 1.897  -1.066 NAG 1 H5  polymer 1 1 41 ? ? ? 
PRD_900036 HAV1   H11 H 0 1 N N N 14.608 67.026 48.170 0.415  0.292  -2.228 NAG 1 H61 polymer 1 1 42 ? ? ? 
PRD_900036 HAV2   H12 H 0 1 N N N 15.204 65.550 47.336 -0.990 -0.389 -3.082 NAG 1 H62 polymer 1 1 43 ? ? ? 
PRD_900036 HAB1   H5  H 0 1 N N N 22.919 70.342 45.118 -7.342 2.314  1.899  NAG 1 H81 polymer 1 1 44 ? ? ? 
PRD_900036 HAB2   H6  H 0 1 N N N 21.482 70.001 44.096 -7.890 0.646  2.189  NAG 1 H82 polymer 1 1 45 ? ? ? 
PRD_900036 HAB3   H7  H 0 1 N N N 21.495 71.436 45.177 -6.506 1.298  3.098  NAG 1 H83 polymer 1 1 46 ? ? ? 
PRD_900036 HAX    H4  H 0 1 N N N 19.392 69.967 45.474 -4.405 1.481  1.956  NAG 1 HN2 polymer 1 1 47 ? ? ? 
PRD_900036 HAH    H9  H 0 1 N N N 17.307 70.811 48.468 -5.056 2.391  -2.298 NAG 1 HO1 polymer 1 1 48 ? ? ? 
PRD_900036 HAZ    H1  H 0 1 N N N 20.798 67.077 45.835 -3.108 -0.505 2.470  NAG 1 HO3 polymer 1 1 49 ? ? ? 
PRD_900036 HAG    H13 H 0 1 N N N 15.348 65.394 49.652 0.072  1.335  -4.349 NAG 1 HO6 polymer 1 1 50 ? ? ? 
PRD_900036 "H1'"  H15 H 0 1 N N N 17.848 64.024 47.639 0.565  -1.300 -1.461 GAL 2 H1  polymer 1 1 51 ? ? ? 
PRD_900036 "H2'"  H24 H 0 1 N N N 17.031 62.952 44.890 1.983  -1.338 1.243  GAL 2 H2  polymer 1 1 52 ? ? ? 
PRD_900036 "H3'"  H22 H 0 1 N N N 17.410 61.646 47.636 2.805  -2.504 -1.459 GAL 2 H3  polymer 1 1 53 ? ? ? 
PRD_900036 "H4'"  H20 H 0 1 N N N 19.324 60.507 46.648 2.508  -4.689 -0.357 GAL 2 H4  polymer 1 1 54 ? ? ? 
PRD_900036 "H5'"  H16 H 0 1 N N N 19.758 62.649 47.723 0.578  -3.728 -1.554 GAL 2 H5  polymer 1 1 55 ? ? ? 
PRD_900036 "H6'1" H17 H 0 1 N N N 21.653 61.535 46.593 0.337  -5.889 -0.296 GAL 2 H61 polymer 1 1 56 ? ? ? 
PRD_900036 "H6'2" H18 H 0 1 N N N 21.265 62.401 45.068 -0.284 -4.970 1.096  GAL 2 H62 polymer 1 1 57 ? ? ? 
PRD_900036 H2     H23 H 0 1 N N N 15.785 60.684 46.255 4.607  -3.312 -0.111 GAL 2 HO3 polymer 1 1 58 ? ? ? 
PRD_900036 H1     H21 H 0 1 N N N 18.539 60.542 44.443 1.534  -4.681 1.825  GAL 2 HO4 polymer 1 1 59 ? ? ? 
PRD_900036 "H6'"  H19 H 0 1 N N N 22.900 63.480 46.324 -2.048 -5.749 -0.313 GAL 2 HO6 polymer 1 1 60 ? ? ? 
PRD_900036 HBQ    H25 H 0 1 N N N 14.814 61.659 45.312 4.238  -0.385 0.981  FUC 3 H1  polymer 1 1 61 ? ? ? 
PRD_900036 HBO    H34 H 0 1 N N N 12.537 62.528 45.338 5.165  1.873  0.627  FUC 3 H2  polymer 1 1 62 ? ? ? 
PRD_900036 HBN    H32 H 0 1 N N N 13.643 64.859 46.968 2.780  2.259  -1.243 FUC 3 H3  polymer 1 1 63 ? ? ? 
PRD_900036 HBL    H30 H 0 1 N N N 13.135 66.257 45.057 2.048  3.946  0.398  FUC 3 H4  polymer 1 1 64 ? ? ? 
PRD_900036 HBH    H26 H 0 1 N N N 15.354 65.254 45.107 1.235  1.635  0.677  FUC 3 H5  polymer 1 1 65 ? ? ? 
PRD_900036 HAC1   H27 H 0 1 N N N 14.743 66.638 43.147 2.017  2.875  3.354  FUC 3 H61 polymer 1 1 66 ? ? ? 
PRD_900036 HAC2   H28 H 0 1 N N N 15.900 65.341 42.695 0.626  3.380  2.365  FUC 3 H62 polymer 1 1 67 ? ? ? 
PRD_900036 HAC3   H29 H 0 1 N N N 14.158 65.172 42.290 0.673  1.745  3.066  FUC 3 H63 polymer 1 1 68 ? ? ? 
PRD_900036 HAL    H35 H 0 1 N N N 12.263 62.427 47.655 5.665  0.198  -1.004 FUC 3 HO2 polymer 1 1 69 ? ? ? 
PRD_900036 HAK    H33 H 0 1 N N N 11.453 64.172 47.422 4.780  3.405  -1.872 FUC 3 HO3 polymer 1 1 70 ? ? ? 
PRD_900036 HAI    H31 H 0 1 N N N 11.376 64.955 44.236 3.276  4.074  2.445  FUC 3 HO4 polymer 1 1 71 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_900036 OAZ   CBV    SING N N 1  
PRD_900036 CBV   CBU    SING N N 2  
PRD_900036 CBV   CBS    SING N N 3  
PRD_900036 CBS   CBI    SING N N 4  
PRD_900036 CBS   NAX    SING N N 5  
PRD_900036 NAX   CBF    SING N N 6  
PRD_900036 CBF   CAB    SING N N 7  
PRD_900036 CBF   OAD    DOUB N N 8  
PRD_900036 CBI   OAH    SING N N 9  
PRD_900036 CBI   OBA    SING N N 10 
PRD_900036 OBA   CBK    SING N N 11 
PRD_900036 CBK   CBU    SING N N 12 
PRD_900036 CBK   CAV    SING N N 13 
PRD_900036 CAV   OAG    SING N N 14 
PRD_900036 CBU   "O1'"  SING N N 15 
PRD_900036 "O1'" "C1'"  SING N N 16 
PRD_900036 "C1'" "C2'"  SING N N 17 
PRD_900036 "C1'" "O5'"  SING N N 18 
PRD_900036 "O5'" "C5'"  SING N N 19 
PRD_900036 "C5'" "C4'"  SING N N 20 
PRD_900036 "C5'" "C6'"  SING N N 21 
PRD_900036 "C6'" "O6'"  SING N N 22 
PRD_900036 "C4'" "O4'"  SING N N 23 
PRD_900036 "C4'" "C3'"  SING N N 24 
PRD_900036 "C3'" "O3'"  SING N N 25 
PRD_900036 "C3'" "C2'"  SING N N 26 
PRD_900036 "C2'" "O2'"  SING N N 27 
PRD_900036 "O2'" CBQ    SING N N 28 
PRD_900036 CBQ   OBB    SING N N 29 
PRD_900036 CBQ   CBO    SING N N 30 
PRD_900036 OBB   CBH    SING N N 31 
PRD_900036 CBH   CAC    SING N N 32 
PRD_900036 CBH   CBL    SING N N 33 
PRD_900036 CBL   OAI    SING N N 34 
PRD_900036 CBL   CBN    SING N N 35 
PRD_900036 CBN   OAK    SING N N 36 
PRD_900036 CBN   CBO    SING N N 37 
PRD_900036 CBO   OAL    SING N N 38 
PRD_900036 OAZ   HAZ    SING N N 39 
PRD_900036 CBV   HBV    SING N N 40 
PRD_900036 CBS   HBS    SING N N 41 
PRD_900036 NAX   HAX    SING N N 42 
PRD_900036 CAB   HAB1   SING N N 43 
PRD_900036 CAB   HAB2   SING N N 44 
PRD_900036 CAB   HAB3   SING N N 45 
PRD_900036 CBI   HBI    SING N N 46 
PRD_900036 OAH   HAH    SING N N 47 
PRD_900036 CBK   HBK    SING N N 48 
PRD_900036 CAV   HAV1   SING N N 49 
PRD_900036 CAV   HAV2   SING N N 50 
PRD_900036 OAG   HAG    SING N N 51 
PRD_900036 CBU   HBU    SING N N 52 
PRD_900036 "C1'" "H1'"  SING N N 53 
PRD_900036 "C5'" "H5'"  SING N N 54 
PRD_900036 "C6'" "H6'1" SING N N 55 
PRD_900036 "C6'" "H6'2" SING N N 56 
PRD_900036 "O6'" "H6'"  SING N N 57 
PRD_900036 "C4'" "H4'"  SING N N 58 
PRD_900036 "O4'" H1     SING N N 59 
PRD_900036 "C3'" "H3'"  SING N N 60 
PRD_900036 "O3'" H2     SING N N 61 
PRD_900036 "C2'" "H2'"  SING N N 62 
PRD_900036 CBQ   HBQ    SING N N 63 
PRD_900036 CBH   HBH    SING N N 64 
PRD_900036 CAC   HAC1   SING N N 65 
PRD_900036 CAC   HAC2   SING N N 66 
PRD_900036 CAC   HAC3   SING N N 67 
PRD_900036 CBL   HBL    SING N N 68 
PRD_900036 OAI   HAI    SING N N 69 
PRD_900036 CBN   HBN    SING N N 70 
PRD_900036 OAK   HAK    SING N N 71 
PRD_900036 CBO   HBO    SING N N 72 
PRD_900036 OAL   HAL    SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_900036 SMILES           ACDLabs              10.04 "O=C(NC3C(O)C(OC2OC(C(O)C(O)C2OC1OC(C)C(O)C(O)C1O)CO)C(OC3O)CO)C"                                                                                                                                                                             
PRD_900036 SMILES_CANONICAL CACTVS               3.341 
;C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]2O[C@H]3[C@H](O)[C@@H](NC(C)=O)[C@H](O)O[C@@H]3CO)[C@@H](O)[C
 @H](O)[C@@H]1O
;
PRD_900036 SMILES           CACTVS               3.341 "C[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](CO)O[CH]2O[CH]3[CH](O)[CH](NC(C)=O)[CH](O)O[CH]3CO)[CH](O)[CH](O)[CH]1O"                                                                                                                                
PRD_900036 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 
;C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@H]([C@H](O[C@H]2O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O)CO)C
 O)O)O)O)O)O
;
PRD_900036 SMILES           "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(C(O1)OC2C(C(C(OC2OC3C(OC(C(C3O)NC(=O)C)O)CO)CO)O)O)O)O)O"                                                                                                                                                                           
PRD_900036 InChI            InChI                1.03  
;InChI=1S/C20H35NO15/c1-5-10(25)13(28)15(30)19(32-5)36-17-14(29)11(26)7(3-22)34-20(17)35-16-8(4-23)33-18(31)9(12(16)27)2
 1-6(2)24/h5,7-20,22-23,25-31H,3-4H2,1-2H3,(H,21,24)/t5-,7+,8+,9+,10+,11-,12+,13+,14-,15-,16+,17+,18+,19-,20-/m0/s1
;
PRD_900036 InChIKey         InChI                1.03  PHTAQVMXYWFMHF-QVPNGJTFSA-N                                                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_900036 "SYSTEMATIC NAME" ACDLabs              10.04 "6-deoxy-alpha-L-galactopyranosyl-(1->2)-beta-D-galactopyranosyl-(1->4)-2-(acetylamino)-2-deoxy-beta-D-glucopyranose"                                                                                     
PRD_900036 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 
;N-[(2R,3R,4R,5S,6R)-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3S,4R,5S,6S)-3,4,5-trihydroxy-6-methyl-o
 xan-2-yl]oxy-oxan-2-yl]oxy-2,4-dihydroxy-6-(hydroxymethyl)oxan-3-yl]ethanamide
;
# 
