data_PRDCC_900059
# 
_chem_comp.id                                    PRD_900059 
_chem_comp.name                                  
;[(2R,3S,4S,5S)-2,5-bis(hydroxymethyl)-5-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-oxidany
 l-oxolan-3-yl] [(2R,3R,4S,5S)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate
;
_chem_comp.type                                  saccharide 
_chem_comp.formula                               "C17 H31 O18 P" 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.formula_weight                        554.391 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_900059 C1  C1  C 0 1 N N R 13.208 24.287 24.830 4.563  -0.713 -0.833 C1   4GL 1  1 1 polymer 1 ? ? ? 
PRD_900059 C2  C2  C 0 1 N N R 13.417 23.255 25.920 5.581  -1.671 -0.209 C2   4GL 2  1 1 polymer 1 ? ? ? 
PRD_900059 O2  O2  O 0 1 N N N 14.212 23.785 26.959 5.320  -3.003 -0.658 O2   4GL 3  1 1 polymer 1 ? ? ? 
PRD_900059 C3  C3  C 0 1 N N R 13.928 21.918 25.430 5.458  -1.613 1.317  C3   4GL 4  1 1 polymer 1 ? ? ? 
PRD_900059 O3  O3  O 0 1 N N N 15.042 21.446 26.229 4.160  -2.062 1.710  O3   4GL 5  1 1 polymer 1 ? ? ? 
PRD_900059 C4  C4  C 0 1 N N R 14.239 21.736 24.027 5.663  -0.167 1.780  C4   4GL 6  1 1 polymer 1 ? ? ? 
PRD_900059 O4  O4  O 0 1 N N N 14.306 20.320 23.728 6.985  0.259  1.445  O4   4GL 7  1 1 polymer 1 ? ? ? 
PRD_900059 C5  C5  C 0 1 N N R 13.487 22.581 23.010 4.641  0.733  1.080  C5   4GL 8  1 1 polymer 1 ? ? ? 
PRD_900059 O5  O5  O 0 1 N N N 12.711 23.722 23.622 4.789  0.608  -0.336 O5   4GL 9  1 1 polymer 1 ? ? ? 
PRD_900059 C6  C6  C 0 1 N N N 12.636 21.888 22.052 4.877  2.188  1.491  C6   4GL 10 1 1 polymer 1 ? ? ? 
PRD_900059 O6  O6  O 0 1 N N N 11.530 21.188 22.516 3.853  3.013  0.930  O6   4GL 11 1 1 polymer 1 ? ? ? 
PRD_900059 O1  O1  O 0 1 N N N 14.399 25.021 24.590 3.242  -1.133 -0.488 O2   TT7 12 2 1 polymer 1 ? ? ? 
PRD_900059 CBH CBH C 0 1 N N S 14.366 26.458 24.298 2.210  -0.445 -1.198 C2   TT7 13 2 1 polymer 1 ? ? ? 
PRD_900059 CAO CAO C 0 1 N N N 14.275 27.225 25.598 2.446  -0.564 -2.705 C1   TT7 14 2 1 polymer 1 ? ? ? 
PRD_900059 OAD OAD O 0 1 N N N 14.767 26.606 26.760 3.621  0.167  -3.062 O1   TT7 15 2 1 polymer 1 ? ? ? 
PRD_900059 CBD CBD C 0 1 N N S 15.664 26.774 23.602 0.836  -1.042 -0.834 C3   TT7 16 2 1 polymer 1 ? ? ? 
PRD_900059 OAK OAK O 0 1 N N N 16.764 26.078 24.119 0.981  -2.065 0.153  O3   TT7 17 2 1 polymer 1 ? ? ? 
PRD_900059 OAR OAR O 0 1 N N N 13.411 26.839 23.341 2.192  0.940  -0.814 O5   TT7 18 2 1 polymer 1 ? ? ? 
PRD_900059 CBC CBC C 0 1 N N R 14.015 26.898 22.083 0.814  1.370  -0.849 C5   TT7 19 2 1 polymer 1 ? ? ? 
PRD_900059 CAN CAN C 0 1 N N N 13.344 26.039 21.079 0.612  2.611  0.023  C6   TT7 20 2 1 polymer 1 ? ? ? 
PRD_900059 OAC OAC O 0 1 N N N 12.089 25.521 21.407 1.234  3.736  -0.600 O6   TT7 21 2 1 polymer 1 ? ? ? 
PRD_900059 CBG CBG C 0 1 N N S 15.398 26.430 22.285 0.041  0.156  -0.260 C4   TT7 22 2 1 polymer 1 ? ? ? 
PRD_900059 OAU OAU O 0 1 N N N 16.270 27.156 21.418 -1.311 0.141  -0.721 O4   TT7 23 2 1 polymer 1 ? ? ? 
PRD_900059 O15 O15 O 0 1 N N N 18.131 27.350 19.813 -2.473 -0.919 1.254  OP1  TT7 24 2 1 polymer 1 ? ? ? 
PRD_900059 P1  P1  P 0 1 N N N 16.898 26.526 20.069 -2.577 0.185  0.273  P4   TT7 25 2 1 polymer 1 ? ? ? 
PRD_900059 OAL OAL O 0 1 N N N 17.260 25.082 20.241 -2.599 1.593  1.052  OP2  TT7 26 2 1 polymer 1 ? ? ? 
PRD_900059 C8  C8  C 0 1 N N R 16.458 27.295 16.569 -6.111 1.066  -0.455 C1   ARA 27 3 1 polymer 1 ? ? ? 
PRD_900059 CBO CBO C 0 1 N N R 15.860 27.710 17.892 -5.224 -0.085 0.028  C2   ARA 28 3 1 polymer 1 ? ? ? 
PRD_900059 CBM CBM C 0 1 N N S 14.522 28.168 17.755 -5.867 -1.418 -0.367 C3   ARA 29 3 1 polymer 1 ? ? ? 
PRD_900059 CBL CBL C 0 1 N N S 14.284 29.107 16.712 -7.279 -1.485 0.223  C4   ARA 30 3 1 polymer 1 ? ? ? 
PRD_900059 CBN CBN C 0 1 N N N 15.000 28.815 15.403 -8.087 -0.282 -0.268 C5   ARA 31 3 1 polymer 1 ? ? ? 
PRD_900059 OAH OAH O 0 1 N N N 17.804 27.100 16.761 -5.547 2.311  -0.041 O1   ARA 32 3 1 polymer 1 ? ? ? 
PRD_900059 OBA OBA O 0 1 N N N 15.897 26.605 18.845 -3.934 0.021  -0.577 O2   ARA 33 3 1 polymer 1 ? ? ? 
PRD_900059 O14 O14 O 0 1 N N N 14.079 28.696 19.059 -5.083 -2.497 0.145  O3   ARA 34 3 1 polymer 1 ? ? ? 
PRD_900059 O10 O10 O 0 1 N N N 14.628 30.429 17.122 -7.202 -1.458 1.650  O4   ARA 35 3 1 polymer 1 ? ? ? 
PRD_900059 OAX OAX O 0 1 N N N 16.304 28.281 15.563 -7.418 0.924  0.105  O5   ARA 36 3 1 polymer 1 ? ? ? 
PRD_900059 H11 H11 H 0 1 N N N 12.451 24.991 25.206 4.675  -0.717 -1.917 H1   4GL 37 1 1 polymer 1 ? ? ? 
PRD_900059 H2  H2  H 0 1 N N N 12.421 23.060 26.344 6.588  -1.378 -0.505 H2   4GL 38 1 1 polymer 1 ? ? ? 
PRD_900059 H1  H1  H 0 1 N N N 14.333 23.127 27.633 5.378  -3.112 -1.617 HO2  4GL 39 1 1 polymer 1 ? ? ? 
PRD_900059 H3  H3  H 0 1 N N N 13.107 21.216 25.637 6.217  -2.253 1.768  H3   4GL 40 1 1 polymer 1 ? ? ? 
PRD_900059 H4  H4  H 0 1 N N N 14.843 21.563 27.151 3.960  -2.970 1.443  HO3  4GL 41 1 1 polymer 1 ? ? ? 
PRD_900059 H5  H5  H 0 1 N N N 15.279 22.083 23.932 5.523  -0.107 2.859  H4   4GL 42 1 1 polymer 1 ? ? ? 
PRD_900059 H6  H6  H 0 1 N N N 14.791 19.874 24.412 7.684  -0.272 1.852  HO4  4GL 43 1 1 polymer 1 ? ? ? 
PRD_900059 H7  H7  H 0 1 N N N 14.273 23.063 22.409 3.634  0.432  1.369  H5   4GL 44 1 1 polymer 1 ? ? ? 
PRD_900059 H8  H8  H 0 1 N N N 13.273 21.167 21.518 4.852  2.267  2.578  H6   4GL 45 1 1 polymer 1 ? ? ? 
PRD_900059 H9  H9  H 0 1 N N N 12.265 22.644 21.345 5.849  2.516  1.125  H6A  4GL 46 1 1 polymer 1 ? ? ? 
PRD_900059 H10 H10 H 0 1 N N N 11.075 20.791 21.782 3.940  3.951  1.151  HO6  4GL 47 1 1 polymer 1 ? ? ? 
PRD_900059 H12 H12 H 0 1 N N N 14.833 28.164 25.465 2.577  -1.613 -2.970 H12  TT7 48 2 1 polymer 1 ? ? ? 
PRD_900059 H13 H13 H 0 1 N N N 13.213 27.451 25.772 1.588  -0.158 -3.241 H11  TT7 49 2 1 polymer 1 ? ? ? 
PRD_900059 H14 H14 H 0 1 N N N 14.652 27.188 27.502 3.832  0.135  -4.005 HO1  TT7 50 2 1 polymer 1 ? ? ? 
PRD_900059 H15 H15 H 0 1 N N N 15.841 27.857 23.678 0.345  -1.438 -1.723 H3   TT7 51 2 1 polymer 1 ? ? ? 
PRD_900059 H16 H16 H 0 1 N N N 16.912 26.342 25.020 0.147  -2.476 0.419  HO3  TT7 52 2 1 polymer 1 ? ? ? 
PRD_900059 H17 H17 H 0 1 N N N 14.033 27.935 21.716 0.499  1.564  -1.874 H5   TT7 53 2 1 polymer 1 ? ? ? 
PRD_900059 H18 H18 H 0 1 N N N 14.010 25.187 20.878 -0.454 2.803  0.140  H61  TT7 54 2 1 polymer 1 ? ? ? 
PRD_900059 H19 H19 H 0 1 N N N 13.225 26.636 20.163 1.061  2.443  1.002  H62  TT7 55 2 1 polymer 1 ? ? ? 
PRD_900059 H20 H20 H 0 1 N N N 11.767 24.991 20.687 1.146  4.560  -0.101 HO6  TT7 56 2 1 polymer 1 ? ? ? 
PRD_900059 H21 H21 H 0 1 N N N 15.472 25.346 22.116 0.080  0.162  0.829  H4   TT7 57 2 1 polymer 1 ? ? ? 
PRD_900059 H22 H22 H 0 1 N N N 18.200 24.978 20.153 -2.666 2.363  0.471  HOP2 TT7 58 2 1 polymer 1 ? ? ? 
PRD_900059 H30 H30 H 0 1 N N N 15.978 26.359 16.248 -6.177 1.040  -1.543 H1   ARA 59 3 1 polymer 1 ? ? ? 
PRD_900059 H23 H23 H 0 1 N N N 16.475 28.530 18.292 -5.123 -0.036 1.112  H2   ARA 60 3 1 polymer 1 ? ? ? 
PRD_900059 H24 H24 H 0 1 N N N 13.897 27.287 17.546 -5.921 -1.489 -1.453 H3   ARA 61 3 1 polymer 1 ? ? ? 
PRD_900059 H26 H26 H 0 1 N N N 13.207 29.095 16.490 -7.764 -2.407 -0.098 H4   ARA 62 3 1 polymer 1 ? ? ? 
PRD_900059 H28 H28 H 0 1 N N N 15.078 29.754 14.835 -8.180 -0.326 -1.354 H51  ARA 63 3 1 polymer 1 ? ? ? 
PRD_900059 H29 H29 H 0 1 N N N 14.398 28.092 14.834 -9.080 -0.301 0.182  H52  ARA 64 3 1 polymer 1 ? ? ? 
PRD_900059 H31 H31 H 0 1 N N N 17.936 26.441 17.433 -6.059 3.085  -0.313 HO1  ARA 65 3 1 polymer 1 ? ? ? 
PRD_900059 H25 H25 H 0 1 N N N 14.249 28.052 19.736 -5.433 -3.373 -0.068 HO3  ARA 66 3 1 polymer 1 ? ? ? 
PRD_900059 H27 H27 H 0 1 N N N 14.190 30.631 17.940 -8.062 -1.498 2.091  HO4  ARA 67 3 1 polymer 1 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_900059 CBN OAX SING N N 1  
PRD_900059 CBN CBL SING N N 2  
PRD_900059 OAX C8  SING N N 3  
PRD_900059 C8  OAH SING N N 4  
PRD_900059 C8  CBO SING N N 5  
PRD_900059 CBL O10 SING N N 6  
PRD_900059 CBL CBM SING N N 7  
PRD_900059 CBM CBO SING N N 8  
PRD_900059 CBM O14 SING N N 9  
PRD_900059 CBO OBA SING N N 10 
PRD_900059 OBA P1  SING N N 11 
PRD_900059 O15 P1  DOUB N N 12 
PRD_900059 P1  OAL SING N N 13 
PRD_900059 P1  OAU SING N N 14 
PRD_900059 CAN OAC SING N N 15 
PRD_900059 CAN CBC SING N N 16 
PRD_900059 OAU CBG SING N N 17 
PRD_900059 C6  O6  SING N N 18 
PRD_900059 C6  C5  SING N N 19 
PRD_900059 CBC CBG SING N N 20 
PRD_900059 CBC OAR SING N N 21 
PRD_900059 CBG CBD SING N N 22 
PRD_900059 C5  O5  SING N N 23 
PRD_900059 C5  C4  SING N N 24 
PRD_900059 OAR CBH SING N N 25 
PRD_900059 CBD OAK SING N N 26 
PRD_900059 CBD CBH SING N N 27 
PRD_900059 O5  C1  SING N N 28 
PRD_900059 O4  C4  SING N N 29 
PRD_900059 C4  C3  SING N N 30 
PRD_900059 CBH O1  SING N N 31 
PRD_900059 CBH CAO SING N N 32 
PRD_900059 O1  C1  SING N N 33 
PRD_900059 C1  C2  SING N N 34 
PRD_900059 C3  C2  SING N N 35 
PRD_900059 C3  O3  SING N N 36 
PRD_900059 CAO OAD SING N N 37 
PRD_900059 C2  O2  SING N N 38 
PRD_900059 O2  H1  SING N N 39 
PRD_900059 C2  H2  SING N N 40 
PRD_900059 C3  H3  SING N N 41 
PRD_900059 O3  H4  SING N N 42 
PRD_900059 C4  H5  SING N N 43 
PRD_900059 O4  H6  SING N N 44 
PRD_900059 C5  H7  SING N N 45 
PRD_900059 C6  H8  SING N N 46 
PRD_900059 C6  H9  SING N N 47 
PRD_900059 O6  H10 SING N N 48 
PRD_900059 C1  H11 SING N N 49 
PRD_900059 CAO H12 SING N N 50 
PRD_900059 CAO H13 SING N N 51 
PRD_900059 OAD H14 SING N N 52 
PRD_900059 CBD H15 SING N N 53 
PRD_900059 OAK H16 SING N N 54 
PRD_900059 CBC H17 SING N N 55 
PRD_900059 CAN H18 SING N N 56 
PRD_900059 CAN H19 SING N N 57 
PRD_900059 OAC H20 SING N N 58 
PRD_900059 CBG H21 SING N N 59 
PRD_900059 OAL H22 SING N N 60 
PRD_900059 CBO H23 SING N N 61 
PRD_900059 CBM H24 SING N N 62 
PRD_900059 O14 H25 SING N N 63 
PRD_900059 CBL H26 SING N N 64 
PRD_900059 O10 H27 SING N N 65 
PRD_900059 CBN H28 SING N N 66 
PRD_900059 CBN H29 SING N N 67 
PRD_900059 C8  H30 SING N N 68 
PRD_900059 OAH H31 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_900059 SMILES           ACDLabs              12.01 "O=P(OC1C(O)C(O)COC1O)(OC3C(OC(OC2OC(CO)C(O)C(O)C2O)(CO)C3O)CO)O"                                                                                                                                                     
PRD_900059 InChI            InChI                1.03  
;InChI=1S/C17H31O18P/c18-1-6-9(23)10(24)11(25)16(31-6)33-17(4-20)14(26)12(7(2-19)32-17)34-36(28,29)35-13-8(22)5(21)3-30-
15(13)27/h5-16,18-27H,1-4H2,(H,28,29)/t5-,6+,7+,8-,9-,10+,11+,12+,13+,14-,15+,16+,17-/m0/s1
;
PRD_900059 InChIKey         InChI                1.03  BUKOQCAFSQWRGX-FSCBZTLPSA-N                                                                                                                                                                                           
PRD_900059 SMILES_CANONICAL CACTVS               3.385 
;OC[C@H]1O[C@H](O[C@]2(CO)O[C@H](CO)[C@@H](O[P](O)(=O)O[C@H]3[C@H](O)OC[C@H](O)[C@@H]3O)[C@@H]2O)[C@H](O)[C@H](O)[C@H]1O

;
PRD_900059 SMILES           CACTVS               3.385 "OC[CH]1O[CH](O[C]2(CO)O[CH](CO)[CH](O[P](O)(=O)O[CH]3[CH](O)OC[CH](O)[CH]3O)[CH]2O)[CH](O)[CH](O)[CH]1O"                                                                                                             
PRD_900059 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 
;C1[C@@H]([C@@H]([C@H]([C@@H](O1)O)OP(=O)(O)O[C@@H]2[C@H](O[C@@]([C@H]2O)(CO)O[C@@H]3[C@@H]([C@@H]([C@H]([C@H](O3)CO)O)O
)O)CO)O)O
;
PRD_900059 SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(C(C(C(O1)O)OP(=O)(O)OC2C(OC(C2O)(CO)OC3C(C(C(C(O3)CO)O)O)O)CO)O)O"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_900059 "SYSTEMATIC NAME" ACDLabs              12.01 
;(2R,3S,4S,5S)-4-hydroxy-2,5-bis(hydroxymethyl)-5-{[(2R,3R,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyr
an-2-yl]oxy}tetrahydrofuran-3-yl (2R,3R,4S,5S)-2,4,5-trihydroxytetrahydro-2H-pyran-3-yl hydrogen (R)-phosphate (non-preferred name)
;
PRD_900059 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
;[(2R,3S,4S,5S)-2,5-bis(hydroxymethyl)-5-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-oxidany
l-oxolan-3-yl] [(2R,3R,4S,5S)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate
;
# 
