data_560
#

_chem_comp.id                                   560
_chem_comp.name                                 "5-[(3R)-3-{7-[4-(aminomethyl)phenyl]-2H-1,3-benzodioxol-5-yl}but-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H25 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-16
_chem_comp.pdbx_modified_date                   2022-05-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       415.488
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    560
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RGJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
560  C4   C1   C  0  1  Y  N  N  50.759  11.707   2.968  -5.286  -0.977   0.315  C4   560   1  
560  C5   C2   C  0  1  Y  N  N  51.511  11.431   1.842  -4.129  -0.330  -0.121  C5   560   2  
560  C6   C3   C  0  1  Y  N  N  51.546  12.352   0.793  -4.166   0.337  -1.362  C6   560   3  
560  N1   N1   N  0  1  Y  N  N  50.870  13.490   0.879  -5.293   0.323  -2.064  N1   560   4  
560  N3   N2   N  0  1  Y  N  N  50.092  12.869   3.013  -6.368  -0.942  -0.446  N3   560   5  
560  C2   C4   C  0  1  Y  N  N  50.145  13.718   1.972  -6.367  -0.305  -1.608  C2   560   6  
560  CAG  C5   C  0  1  N  N  N  52.252  10.218   1.738  -2.937  -0.343   0.672  CAG  560   7  
560  CAH  C6   C  0  1  N  N  N  52.909   9.213   1.574  -1.959  -0.353   1.322  CAH  560   8  
560  CAI  C7   C  0  1  N  N  R  53.751   8.047   1.266  -0.734  -0.367   2.137  CAI  560   9  
560  CAJ  C8   C  0  1  N  N  N  53.685   7.710  -0.217  -1.016   0.282   3.493  CAJ  560  10  
560  CAK  C9   C  0  1  Y  N  N  53.543   6.942   2.082   0.350   0.404   1.427  CAK  560  11  
560  CAL  C10  C  0  1  Y  N  N  52.288   6.455   2.396   1.526  -0.227   1.080  CAL  560  12  
560  CAM  C11  C  0  1  Y  N  N  52.204   5.330   3.220   2.530   0.482   0.423  CAM  560  13  
560  CAN  C12  C  0  1  Y  N  N  50.920   4.870   3.536   3.796  -0.194   0.048  CAN  560  14  
560  CAO  C13  C  0  1  Y  N  N  50.713   3.686   4.237   4.498  -0.939   0.993  CAO  560  15  
560  CAP  C14  C  0  1  Y  N  N  49.438   3.246   4.555   5.675  -1.566   0.639  CAP  560  16  
560  CAQ  C15  C  0  1  Y  N  N  48.339   3.996   4.168   6.158  -1.457  -0.653  CAQ  560  17  
560  CAR  C16  C  0  1  N  N  N  47.064   3.543   4.498   7.444  -2.145  -1.034  CAR  560  18  
560  CAT  C17  C  0  1  Y  N  N  48.523   5.184   3.465   5.466  -0.719  -1.596  CAT  560  19  
560  CAU  C18  C  0  1  Y  N  N  49.810   5.620   3.155   4.285  -0.091  -1.253  CAU  560  20  
560  CAV  C19  C  0  1  Y  N  N  53.321   4.751   3.712   2.341   1.832   0.119  CAV  560  21  
560  CAX  C20  C  0  1  N  N  N  54.841   3.741   4.979   2.601   4.030  -0.166  CAX  560  22  
560  CAZ  C21  C  0  1  Y  N  N  54.527   5.235   3.396   1.150   2.458   0.474  CAZ  560  23  
560  CBA  C22  C  0  1  Y  N  N  54.649   6.294   2.601   0.158   1.740   1.122  CBA  560  24  
560  CBC  C23  C  0  1  N  N  N  50.683  10.835   4.065  -5.302  -1.710   1.631  CBC  560  25  
560  CBD  C24  C  0  1  N  N  N  51.587  11.317   5.188  -4.877  -3.163   1.410  CBD  560  26  
560  NAA  N3   N  0  1  N  N  N  49.457  14.858   2.050  -7.523  -0.296  -2.369  NAA  560  27  
560  NAE  N4   N  0  1  N  N  N  52.278  12.098  -0.287  -3.047   0.994  -1.841  NAE  560  28  
560  NAS  N5   N  0  1  N  N  N  46.495   2.697   3.441   7.148  -3.499  -1.521  NAS  560  29  
560  OAW  O1   O  0  1  N  N  N  53.475   3.662   4.522   3.144   2.740  -0.505  OAW  560  30  
560  OAY  O2   O  0  1  N  N  N  55.524   4.502   3.967   1.207   3.762   0.072  OAY  560  31  
560  H1   H1   H  0  1  N  N  N  54.787   8.375   1.440  -0.408  -1.396   2.287  H1   560  32  
560  H2   H2   H  0  1  N  N  N  54.321   6.837  -0.424  -1.800  -0.275   4.007  H2   560  33  
560  H3   H3   H  0  1  N  N  N  52.646   7.481  -0.495  -0.108   0.272   4.097  H3   560  34  
560  H4   H4   H  0  1  N  N  N  54.040   8.569  -0.804  -1.341   1.312   3.343  H4   560  35  
560  H5   H5   H  0  1  N  N  N  51.397   6.931   2.015   1.670  -1.271   1.317  H5   560  36  
560  H6   H6   H  0  1  N  N  N  51.566   3.096   4.540   4.122  -1.025   2.002  H6   560  37  
560  H7   H7   H  0  1  N  N  N  49.302   2.324   5.101   6.220  -2.144   1.371  H7   560  38  
560  H8   H8   H  0  1  N  N  N  46.406   4.411   4.652   7.940  -1.577  -1.821  H8   560  39  
560  H9   H9   H  0  1  N  N  N  47.123   2.959   5.428   8.095  -2.206  -0.163  H9   560  40  
560  H10  H10  H  0  1  N  N  N  47.667   5.768   3.160   5.848  -0.636  -2.602  H10  560  41  
560  H11  H11  H  0  1  N  N  N  49.947   6.546   2.616   3.745   0.485  -1.990  H11  560  42  
560  H12  H12  H  0  1  N  N  N  55.278   2.736   5.069   3.075   4.421   0.735  H12  560  43  
560  H13  H13  H  0  1  N  N  N  54.895   4.253   5.951   2.723   4.727  -0.995  H13  560  44  
560  H14  H14  H  0  1  N  N  N  55.636   6.657   2.355  -0.768   2.226   1.394  H14  560  45  
560  H15  H15  H  0  1  N  N  N  49.645  10.797   4.426  -4.609  -1.230   2.322  H15  560  46  
560  H16  H16  H  0  1  N  N  N  50.999   9.829   3.751  -6.308  -1.685   2.049  H16  560  47  
560  H17  H17  H  0  1  N  N  N  51.516  10.624   6.039  -5.570  -3.643   0.719  H17  560  48  
560  H18  H18  H  0  1  N  N  N  52.627  11.354   4.831  -3.871  -3.188   0.992  H18  560  49  
560  H19  H19  H  0  1  N  N  N  51.272  12.322   5.506  -4.888  -3.694   2.362  H19  560  50  
560  H20  H20  H  0  1  N  N  N  49.606  15.395   1.220  -7.538   0.166  -3.222  H20  560  51  
560  H21  H21  H  0  1  N  N  N  48.483  14.653   2.145  -8.317  -0.751  -2.049  H21  560  52  
560  H22  H22  H  0  1  N  N  N  52.206  12.863  -0.927  -3.082   1.450  -2.696  H22  560  53  
560  H23  H23  H  0  1  N  N  N  53.234  11.976  -0.020  -2.228   0.999  -1.322  H23  560  54  
560  H24  H24  H  0  1  N  N  N  45.582   2.392   3.713   6.494  -3.473  -2.289  H24  560  55  
560  H25  H25  H  0  1  N  N  N  46.432   3.222   2.592   7.995  -3.982  -1.783  H25  560  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
560  NAE  C6   SING  N  N   1  
560  CAJ  CAI  SING  N  N   2  
560  C6   N1   DOUB  Y  N   3  
560  C6   C5   SING  Y  N   4  
560  N1   C2   SING  Y  N   5  
560  CAI  CAH  SING  N  N   6  
560  CAI  CAK  SING  N  N   7  
560  CAH  CAG  TRIP  N  N   8  
560  CAG  C5   SING  N  N   9  
560  C5   C4   DOUB  Y  N  10  
560  C2   NAA  SING  N  N  11  
560  C2   N3   DOUB  Y  N  12  
560  CAK  CAL  DOUB  Y  N  13  
560  CAK  CBA  SING  Y  N  14  
560  CAL  CAM  SING  Y  N  15  
560  CBA  CAZ  DOUB  Y  N  16  
560  C4   N3   SING  Y  N  17  
560  C4   CBC  SING  N  N  18  
560  CAU  CAT  DOUB  Y  N  19  
560  CAU  CAN  SING  Y  N  20  
560  CAM  CAN  SING  N  N  21  
560  CAM  CAV  DOUB  Y  N  22  
560  CAZ  CAV  SING  Y  N  23  
560  CAZ  OAY  SING  N  N  24  
560  NAS  CAR  SING  N  N  25  
560  CAT  CAQ  SING  Y  N  26  
560  CAN  CAO  DOUB  Y  N  27  
560  CAV  OAW  SING  N  N  28  
560  OAY  CAX  SING  N  N  29  
560  CBC  CBD  SING  N  N  30  
560  CAQ  CAR  SING  N  N  31  
560  CAQ  CAP  DOUB  Y  N  32  
560  CAO  CAP  SING  Y  N  33  
560  OAW  CAX  SING  N  N  34  
560  CAI  H1   SING  N  N  35  
560  CAJ  H2   SING  N  N  36  
560  CAJ  H3   SING  N  N  37  
560  CAJ  H4   SING  N  N  38  
560  CAL  H5   SING  N  N  39  
560  CAO  H6   SING  N  N  40  
560  CAP  H7   SING  N  N  41  
560  CAR  H8   SING  N  N  42  
560  CAR  H9   SING  N  N  43  
560  CAT  H10  SING  N  N  44  
560  CAU  H11  SING  N  N  45  
560  CAX  H12  SING  N  N  46  
560  CAX  H13  SING  N  N  47  
560  CBA  H14  SING  N  N  48  
560  CBC  H15  SING  N  N  49  
560  CBC  H16  SING  N  N  50  
560  CBD  H17  SING  N  N  51  
560  CBD  H18  SING  N  N  52  
560  CBD  H19  SING  N  N  53  
560  NAA  H20  SING  N  N  54  
560  NAA  H21  SING  N  N  55  
560  NAE  H22  SING  N  N  56  
560  NAE  H23  SING  N  N  57  
560  NAS  H24  SING  N  N  58  
560  NAS  H25  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
560  SMILES            ACDLabs               12.01  "CCc1nc(N)nc(N)c1C#CC(C)c1cc2OCOc2c(c1)c1ccc(CN)cc1"  
560  InChI             InChI                 1.03   "InChI=1S/C24H25N5O2/c1-3-20-18(23(26)29-24(27)28-20)9-4-14(2)17-10-19(22-21(11-17)30-13-31-22)16-7-5-15(12-25)6-8-16/h5-8,10-11,14H,3,12-13,25H2,1-2H3,(H4,26,27,28,29)/t14-/m0/s1"  
560  InChIKey          InChI                 1.03   IIAMZXQFRCVQRC-AWEZNQCLSA-N  
560  SMILES_CANONICAL  CACTVS                3.385  "CCc1nc(N)nc(N)c1C#C[C@H](C)c2cc3OCOc3c(c2)c4ccc(CN)cc4"  
560  SMILES            CACTVS                3.385  "CCc1nc(N)nc(N)c1C#C[CH](C)c2cc3OCOc3c(c2)c4ccc(CN)cc4"  
560  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCc1c(c(nc(n1)N)N)C#C[C@H](C)c2cc(c3c(c2)OCO3)c4ccc(cc4)CN"  
560  SMILES            "OpenEye OEToolkits"  2.0.7  "CCc1c(c(nc(n1)N)N)C#CC(C)c2cc(c3c(c2)OCO3)c4ccc(cc4)CN"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
560  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-[(3R)-3-{7-[4-(aminomethyl)phenyl]-2H-1,3-benzodioxol-5-yl}but-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine"  
560  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[(3~{R})-3-[7-[4-(aminomethyl)phenyl]-1,3-benzodioxol-5-yl]but-1-ynyl]-6-ethyl-pyrimidine-2,4-diamine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
560  "Create component"  2021-07-16  RCSB  
560  "Initial release"   2022-05-25  RCSB  
##
