data_JR0
# 
_chem_comp.id                                    JR0 
_chem_comp.name                                  "N-benzyl-2-{4-[4-(4,5-dimethoxy-1H-indole-2-carbonyl)piperazine-1-carbonyl]piperidin-1-yl}-6-methylpyrimidine-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H39 N7 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-08 
_chem_comp.pdbx_modified_date                    2024-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        625.717 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JR0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TQG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JR0 C10  C1  C 0 1 Y N N N N N -26.572 10.717 4.703  5.281  -1.417 0.557  C10  JR0 1  
JR0 C15  C2  C 0 1 N N N N N N -26.963 8.926  8.202  1.699  -2.648 0.842  C15  JR0 2  
JR0 C20  C3  C 0 1 N N N N N N -24.779 9.553  10.940 -0.707 -0.572 -0.667 C20  JR0 3  
JR0 C22  C4  C 0 1 N N N N N N -23.302 9.834  11.138 -0.775 0.293  -1.899 C22  JR0 4  
JR0 C24  C5  C 0 1 N N N N N N -21.023 9.057  10.937 -1.683 2.200  -0.568 C24  JR0 5  
JR0 C26  C6  C 0 1 N N N N N N -21.716 10.595 12.797 -3.228 0.633  -1.582 C26  JR0 6  
JR0 C28  C7  C 0 1 Y N N N N N -20.090 8.645  13.331 -4.006 2.551  -0.467 C28  JR0 7  
JR0 C01  C8  C 0 1 N N N N N N -24.318 13.237 -1.350 11.212 1.589  -1.424 C01  JR0 8  
JR0 C03  C9  C 0 1 Y N N N N N -24.828 12.221 0.699  9.307  0.545  -0.455 C03  JR0 9  
JR0 C04  C10 C 0 1 Y N N N N N -24.502 11.373 1.744  8.622  -0.001 0.617  C04  JR0 10 
JR0 C06  C11 C 0 1 N N N N N N -23.368 9.326  1.595  8.987  1.077  2.704  C06  JR0 11 
JR0 C07  C12 C 0 1 Y N N N N N -25.406 11.202 2.831  7.327  -0.510 0.426  C07  JR0 12 
JR0 C08  C13 C 0 1 Y N N N N N -26.602 11.875 2.832  6.739  -0.458 -0.853 C08  JR0 13 
JR0 C11  C14 C 0 1 Y N N N N N -25.395 10.441 4.030  6.386  -1.118 1.290  C11  JR0 14 
JR0 C12  C15 C 0 1 N N N N N N -27.056 10.062 5.996  4.063  -2.056 1.074  C12  JR0 15 
JR0 C16  C16 C 0 1 N N N N N N -26.813 9.730  9.466  0.568  -1.650 1.122  C16  JR0 16 
JR0 C18  C17 C 0 1 N N N N N N -24.716 10.595 8.599  1.656  0.021  -0.435 C18  JR0 17 
JR0 C19  C18 C 0 1 N N N N N N -24.853 9.733  7.345  2.787  -0.976 -0.715 C19  JR0 18 
JR0 C23  C19 C 0 1 N N N N N N -22.493 8.703  10.740 -0.560 1.758  -1.509 C23  JR0 19 
JR0 C27  C20 C 0 1 N N N N N N -23.147 10.169 12.532 -2.152 0.144  -2.554 C27  JR0 20 
JR0 C30  C21 C 0 1 Y N N N N N -19.585 8.102  15.516 -4.908 4.341  0.669  C30  JR0 21 
JR0 C31  C22 C 0 1 N N N N N N -19.692 8.390  17.013 -4.828 5.779  1.112  C31  JR0 22 
JR0 C32  C23 C 0 1 Y N N N N N -18.865 7.014  15.048 -5.992 3.554  1.031  C32  JR0 23 
JR0 C33  C24 C 0 1 Y N N N N N -18.808 6.810  13.680 -6.028 2.230  0.594  C33  JR0 24 
JR0 C35  C25 C 0 1 N N N N N N -18.045 5.665  13.062 -7.166 1.347  0.955  C35  JR0 25 
JR0 C38  C26 C 0 1 N N N N N N -16.890 4.780  11.027 -8.312 -0.801 0.882  C38  JR0 26 
JR0 C39  C27 C 0 1 Y N N N N N -15.439 5.234  10.933 -8.098 -2.168 0.284  C39  JR0 27 
JR0 C40  C28 C 0 1 Y N N N N N -14.691 5.382  12.094 -8.574 -2.450 -0.983 C40  JR0 28 
JR0 C41  C29 C 0 1 Y N N N N N -13.369 5.796  12.028 -8.377 -3.704 -1.532 C41  JR0 29 
JR0 C42  C30 C 0 1 Y N N N N N -12.801 6.064  10.792 -7.705 -4.675 -0.814 C42  JR0 30 
JR0 C43  C31 C 0 1 Y N N N N N -13.553 5.921  9.640  -7.229 -4.392 0.453  C43  JR0 31 
JR0 C44  C32 C 0 1 Y N N N N N -14.873 5.504  9.699  -7.420 -3.137 0.999  C44  JR0 32 
JR0 C45  C33 C 0 1 Y N N N N N -26.939 12.739 1.754  7.447  0.096  -1.914 C45  JR0 33 
JR0 C46  C34 C 0 1 Y N N N N N -26.045 12.910 0.699  8.717  0.591  -1.714 C46  JR0 34 
JR0 N09  N1  N 0 1 Y N N N N N -27.294 11.553 3.963  5.485  -1.020 -0.751 N09  JR0 35 
JR0 N14  N2  N 0 1 N N N N N N -26.271 9.579  7.108  2.893  -1.899 0.424  N14  JR0 36 
JR0 N17  N3  N 0 1 N N N N N N -25.408 9.966  9.714  0.463  -0.728 -0.017 N17  JR0 37 
JR0 N25  N4  N 0 1 N N N N N N -20.735 9.518  12.362 -2.979 2.039  -1.240 N25  JR0 38 
JR0 N29  N5  N 0 1 Y N N N N N -20.175 8.884  14.631 -3.947 3.815  -0.070 N29  JR0 39 
JR0 N34  N6  N 0 1 Y N N N N N -19.416 7.633  12.856 -5.024 1.769  -0.147 N34  JR0 40 
JR0 N37  N7  N 0 1 N N N N N N -17.636 5.819  11.693 -7.189 0.069  0.526  N37  JR0 41 
JR0 O02  O1  O 0 1 N N N N N N -23.905 12.367 -0.342 10.562 1.039  -0.276 O02  JR0 42 
JR0 O05  O2  O 0 1 N N N N N N -23.269 10.712 1.707  9.200  -0.045 1.846  O05  JR0 43 
JR0 O13  O3  O 0 1 N N N N N N -28.199 9.806  6.045  4.111  -2.726 2.089  O13  JR0 44 
JR0 O21  O4  O 0 1 N N N N N N -25.412 9.037  11.785 -1.706 -1.128 -0.260 O21  JR0 45 
JR0 O36  O5  O 0 1 N N N N N N -17.792 4.691  13.681 -8.075 1.777  1.635  O36  JR0 46 
JR0 H151 H1  H 0 0 N N N N N N -28.031 8.835  7.954  1.921  -3.213 1.748  H151 JR0 47 
JR0 H152 H2  H 0 0 N N N N N N -26.536 7.924  8.356  1.400  -3.331 0.048  H152 JR0 48 
JR0 H221 H3  H 0 0 N N N N N N -23.032 10.706 10.524 -0.002 -0.015 -2.603 H221 JR0 49 
JR0 H242 H4  H 0 0 N N N N N N -20.411 8.169  10.720 -1.664 1.588  0.334  H242 JR0 50 
JR0 H241 H5  H 0 0 N N N N N N -20.756 9.866  10.241 -1.541 3.247  -0.299 H241 JR0 51 
JR0 H262 H6  H 0 0 N N N N N N -21.507 11.519 12.238 -4.208 0.542  -2.051 H262 JR0 52 
JR0 H261 H7  H 0 0 N N N N N N -21.590 10.782 13.874 -3.201 0.028  -0.676 H261 JR0 53 
JR0 H011 H8  H 0 0 N N N N N N -23.540 13.296 -2.126 12.203 1.946  -1.144 H011 JR0 54 
JR0 H012 H9  H 0 0 N N N N N N -25.253 12.865 -1.795 11.307 0.820  -2.191 H012 JR0 55 
JR0 H013 H10 H 0 0 N N N N N N -24.487 14.237 -0.924 10.623 2.420  -1.813 H013 JR0 56 
JR0 H061 H11 H 0 0 N N N N N N -22.360 8.886  1.573  9.378  1.977  2.228  H061 JR0 57 
JR0 H062 H12 H 0 0 N N N N N N -23.923 8.927  2.457  7.919  1.198  2.886  H062 JR0 58 
JR0 H063 H13 H 0 0 N N N N N N -23.900 9.070  0.667  9.501  0.914  3.651  H063 JR0 59 
JR0 H111 H14 H 0 0 N N N N N N -24.613 9.771  4.356  6.522  -1.310 2.344  H111 JR0 60 
JR0 H161 H15 H 0 0 N N N N N N -27.334 10.692 9.354  -0.372 -2.188 1.246  H161 JR0 61 
JR0 H162 H16 H 0 0 N N N N N N -27.247 9.174  10.310 0.791  -1.090 2.030  H162 JR0 62 
JR0 H182 H17 H 0 0 N N N N N N -23.651 10.708 8.849  1.958  0.702  0.361  H182 JR0 63 
JR0 H181 H18 H 0 0 N N N N N N -25.155 11.586 8.410  1.434  0.589  -1.338 H181 JR0 64 
JR0 H191 H19 H 0 0 N N N N N N -24.376 10.230 6.488  2.563  -1.539 -1.621 H191 JR0 65 
JR0 H192 H20 H 0 0 N N N N N N -24.385 8.750  7.506  3.727  -0.438 -0.841 H192 JR0 66 
JR0 H231 H21 H 0 0 N N N N N N -22.749 7.830  11.358 0.400  1.863  -1.004 H231 JR0 67 
JR0 H232 H22 H 0 0 N N N N N N -22.679 8.470  9.681  -0.571 2.378  -2.405 H232 JR0 68 
JR0 H272 H23 H 0 0 N N N N N N -23.387 9.290  13.149 -2.187 0.739  -3.466 H272 JR0 69 
JR0 H271 H24 H 0 0 N N N N N N -23.828 10.994 12.788 -2.328 -0.904 -2.795 H271 JR0 70 
JR0 H313 H25 H 0 0 N N N N N N -20.301 9.292  17.171 -5.305 6.416  0.367  H313 JR0 71 
JR0 H311 H26 H 0 0 N N N N N N -20.165 7.535  17.518 -5.338 5.893  2.069  H311 JR0 72 
JR0 H312 H27 H 0 0 N N N N N N -18.686 8.550  17.428 -3.783 6.068  1.222  H312 JR0 73 
JR0 H321 H28 H 0 0 N N N N N N -18.363 6.345  15.731 -6.791 3.958  1.635  H321 JR0 74 
JR0 H381 H29 H 0 0 N N N N N N -16.953 3.846  11.604 -9.239 -0.377 0.495  H381 JR0 75 
JR0 H382 H30 H 0 0 N N N N N N -17.297 4.616  10.018 -8.377 -0.886 1.967  H382 JR0 76 
JR0 H401 H31 H 0 0 N N N N N N -15.141 5.174  13.053 -9.099 -1.691 -1.544 H401 JR0 77 
JR0 H411 H32 H 0 0 N N N N N N -12.787 5.909  12.931 -8.749 -3.924 -2.521 H411 JR0 78 
JR0 H421 H33 H 0 0 N N N N N N -11.772 6.384  10.729 -7.551 -5.654 -1.242 H421 JR0 79 
JR0 H431 H34 H 0 0 N N N N N N -13.105 6.137  8.681  -6.703 -5.151 1.014  H431 JR0 80 
JR0 H441 H35 H 0 0 N N N N N N -15.452 5.391  8.795  -7.044 -2.915 1.987  H441 JR0 81 
JR0 H451 H36 H 0 0 N N N N N N -27.885 13.261 1.753  7.001  0.138  -2.897 H451 JR0 82 
JR0 H461 H37 H 0 0 N N N N N N -26.291 13.573 -0.117 9.260  1.020  -2.543 H461 JR0 83 
JR0 H091 H38 H 0 0 N N N N N N -28.204 11.893 4.199  4.850  -1.119 -1.478 H091 JR0 84 
JR0 H371 H39 H 0 0 N N N N N N -17.871 6.655  11.197 -6.463 -0.273 -0.017 H371 JR0 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JR0 O02 C01  SING N N 1  
JR0 C03 O02  SING N N 2  
JR0 C04 C03  DOUB Y N 3  
JR0 C06 O05  SING N N 4  
JR0 O05 C04  SING N N 5  
JR0 C07 C04  SING Y N 6  
JR0 C08 C07  DOUB Y N 7  
JR0 C10 N09  SING Y N 8  
JR0 C11 C10  DOUB Y N 9  
JR0 C12 C10  SING N N 10 
JR0 O13 C12  DOUB N N 11 
JR0 N14 C12  SING N N 12 
JR0 C15 N14  SING N N 13 
JR0 C16 C15  SING N N 14 
JR0 N17 C16  SING N N 15 
JR0 C19 C18  SING N N 16 
JR0 C18 N17  SING N N 17 
JR0 C20 N17  SING N N 18 
JR0 O21 C20  DOUB N N 19 
JR0 C22 C20  SING N N 20 
JR0 C23 C22  SING N N 21 
JR0 C24 C23  SING N N 22 
JR0 N25 C24  SING N N 23 
JR0 C27 C26  SING N N 24 
JR0 C26 N25  SING N N 25 
JR0 C28 N25  SING N N 26 
JR0 N29 C28  DOUB Y N 27 
JR0 C30 N29  SING Y N 28 
JR0 C31 C30  SING N N 29 
JR0 C32 C30  DOUB Y N 30 
JR0 C33 C32  SING Y N 31 
JR0 N34 C33  DOUB Y N 32 
JR0 C35 C33  SING N N 33 
JR0 O36 C35  DOUB N N 34 
JR0 N37 C35  SING N N 35 
JR0 C38 N37  SING N N 36 
JR0 C39 C38  SING N N 37 
JR0 C40 C39  DOUB Y N 38 
JR0 C41 C40  SING Y N 39 
JR0 C42 C41  DOUB Y N 40 
JR0 C43 C42  SING Y N 41 
JR0 C44 C43  DOUB Y N 42 
JR0 N09 C08  SING Y N 43 
JR0 C45 C08  SING Y N 44 
JR0 C46 C45  DOUB Y N 45 
JR0 C03 C46  SING Y N 46 
JR0 C07 C11  SING Y N 47 
JR0 N14 C19  SING N N 48 
JR0 C22 C27  SING N N 49 
JR0 C28 N34  SING Y N 50 
JR0 C39 C44  SING Y N 51 
JR0 C15 H151 SING N N 52 
JR0 C15 H152 SING N N 53 
JR0 C22 H221 SING N N 54 
JR0 C24 H242 SING N N 55 
JR0 C24 H241 SING N N 56 
JR0 C26 H262 SING N N 57 
JR0 C26 H261 SING N N 58 
JR0 C01 H011 SING N N 59 
JR0 C01 H012 SING N N 60 
JR0 C01 H013 SING N N 61 
JR0 C06 H061 SING N N 62 
JR0 C06 H062 SING N N 63 
JR0 C06 H063 SING N N 64 
JR0 C11 H111 SING N N 65 
JR0 C16 H161 SING N N 66 
JR0 C16 H162 SING N N 67 
JR0 C18 H182 SING N N 68 
JR0 C18 H181 SING N N 69 
JR0 C19 H191 SING N N 70 
JR0 C19 H192 SING N N 71 
JR0 C23 H231 SING N N 72 
JR0 C23 H232 SING N N 73 
JR0 C27 H272 SING N N 74 
JR0 C27 H271 SING N N 75 
JR0 C31 H313 SING N N 76 
JR0 C31 H311 SING N N 77 
JR0 C31 H312 SING N N 78 
JR0 C32 H321 SING N N 79 
JR0 C38 H381 SING N N 80 
JR0 C38 H382 SING N N 81 
JR0 C40 H401 SING N N 82 
JR0 C41 H411 SING N N 83 
JR0 C42 H421 SING N N 84 
JR0 C43 H431 SING N N 85 
JR0 C44 H441 SING N N 86 
JR0 C45 H451 SING N N 87 
JR0 C46 H461 SING N N 88 
JR0 N09 H091 SING N N 89 
JR0 N37 H371 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JR0 SMILES           ACDLabs              12.01 "O=C(C1CCN(CC1)c1nc(C)cc(n1)C(=O)NCc1ccccc1)N1CCN(CC1)C(=O)c1cc2c(OC)c(OC)ccc2[NH]1"                                                                                                                                    
JR0 InChI            InChI                1.06  "InChI=1S/C34H39N7O5/c1-22-19-27(31(42)35-21-23-7-5-4-6-8-23)38-34(36-22)41-13-11-24(12-14-41)32(43)39-15-17-40(18-16-39)33(44)28-20-25-26(37-28)9-10-29(45-2)30(25)46-3/h4-10,19-20,24,37H,11-18,21H2,1-3H3,(H,35,42)" 
JR0 InChIKey         InChI                1.06  PJHZEAWAAMNJHJ-UHFFFAOYSA-N                                                                                                                                                                                             
JR0 SMILES_CANONICAL CACTVS               3.385 "COc1ccc2[nH]c(cc2c1OC)C(=O)N3CCN(CC3)C(=O)C4CCN(CC4)c5nc(C)cc(n5)C(=O)NCc6ccccc6"                                                                                                                                      
JR0 SMILES           CACTVS               3.385 "COc1ccc2[nH]c(cc2c1OC)C(=O)N3CCN(CC3)C(=O)C4CCN(CC4)c5nc(C)cc(n5)C(=O)NCc6ccccc6"                                                                                                                                      
JR0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCC(CC2)C(=O)N3CCN(CC3)C(=O)c4cc5c([nH]4)ccc(c5OC)OC)C(=O)NCc6ccccc6"                                                                                                                                    
JR0 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCC(CC2)C(=O)N3CCN(CC3)C(=O)c4cc5c([nH]4)ccc(c5OC)OC)C(=O)NCc6ccccc6"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JR0 "SYSTEMATIC NAME" ACDLabs              12.01 "N-benzyl-2-{4-[4-(4,5-dimethoxy-1H-indole-2-carbonyl)piperazine-1-carbonyl]piperidin-1-yl}-6-methylpyrimidine-4-carboxamide"                   
JR0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[4-[4-[(4,5-dimethoxy-1~{H}-indol-2-yl)carbonyl]piperazin-1-yl]carbonylpiperidin-1-yl]-6-methyl-~{N}-(phenylmethyl)pyrimidine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JR0 "Create component" 2023-08-08 RCSB 
JR0 "Initial release"  2024-04-24 RCSB 
# 
