data_L70
# 
_chem_comp.id                                    L70 
_chem_comp.name                                  "(3~{S})-1-[2-azanyl-3,5-bis(chloranyl)phenyl]carbonyl-~{N}-[2-[2-(dimethylamino)ethyldisulfanyl]ethyl]piperidine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H28 Cl2 N4 O2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        479.487 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L70 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A65 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L70 C12  C1  C  0 1 Y N N N N N -17.792 -21.794 0.262  4.297   0.467  -0.467 C12  L70 1  
L70 C13  C2  C  0 1 Y N N N N N -18.664 -20.871 -0.285 4.759   1.637  0.153  C13  L70 2  
L70 C15  C3  C  0 1 Y N N N N N -19.766 -20.444 0.447  6.126   1.846  0.297  C15  L70 3  
L70 C17  C4  C  0 1 Y N N N N N -19.972 -20.935 1.722  7.022   0.906  -0.169 C17  L70 4  
L70 C18  C5  C  0 1 Y N N N N N -19.079 -21.845 2.272  6.569   -0.252 -0.783 C18  L70 5  
L70 C20  C6  C  0 1 Y N N N N N -17.993 -22.278 1.539  5.217   -0.476 -0.934 C20  L70 6  
L70 C22  C7  C  0 1 N N N N N N -17.441 -23.177 -2.991 0.887   -1.218 -0.412 C22  L70 7  
L70 C02  C8  C  0 1 N N N N N N -19.236 -25.397 -7.493 -4.219  -0.470 -0.940 C02  L70 8  
L70 C03  C9  C  0 1 N N N N N N -17.796 -24.878 -7.421 -3.457  -1.578 -0.210 C03  L70 9  
L70 C05  C10 C  0 1 N N N N N N -17.638 -25.161 -4.898 -1.218  -1.963 0.670  C05  L70 10 
L70 C06  C11 C  0 1 N N S N N N -17.174 -24.623 -3.492 0.199   -1.516 0.923  C06  L70 11 
L70 C07  C12 C  0 1 N N N N N N -15.713 -24.881 -3.628 0.962   -2.625 1.650  C07  L70 12 
L70 C08  C13 C  0 1 N N N N N N -14.978 -23.602 -3.729 2.391   -2.160 1.937  C08  L70 13 
L70 C09  C14 C  0 1 N N N N N N -15.036 -23.013 -2.328 3.105   -1.870 0.612  C09  L70 14 
L70 C11  C15 C  0 1 N N N N N N -16.551 -22.222 -0.533 2.850   0.230  -0.621 C11  L70 15 
L70 N04  N1  N  0 1 N N N N N N -17.395 -24.394 -6.103 -2.080  -1.144 0.036  N04  L70 16 
L70 N10  N2  N  0 1 N N N N N N -16.448 -22.790 -1.890 2.301   -0.911 -0.157 N10  L70 17 
L70 N14  N3  N  0 1 N N N N N N -18.399 -20.389 -1.630 3.854   2.583  0.622  N14  L70 18 
L70 O21  O1  O  0 1 N N N N N N -15.521 -21.999 0.031  2.152   1.063  -1.165 O21  L70 19 
L70 O23  O2  O  0 1 N N N N N N -18.136 -26.240 -4.964 -1.583  -3.059 1.038  O23  L70 20 
L70 S01  S1  S  0 1 N N N N N N -20.385 -24.189 -6.760 -5.924  -1.008 -1.245 S01  L70 21 
L70 CL16 CL1 CL 0 0 N N N N N N -20.890 -19.265 -0.275 6.705   3.292  1.064  CL16 L70 22 
L70 CL19 CL2 CL 0 0 N N N N N N -19.285 -22.509 3.920  7.709   -1.424 -1.365 CL19 L70 23 
L70 H171 H1  H  0 0 N N N N N N -20.830 -20.610 2.292  8.083   1.073  -0.055 H171 L70 24 
L70 H201 H2  H  0 0 N N N N N N -17.303 -22.993 1.963  4.869   -1.380 -1.413 H201 L70 25 
L70 H221 H3  H  0 0 N N N N N N -17.335 -22.478 -3.834 0.814   -2.090 -1.063 H221 L70 26 
L70 H222 H4  H  0 0 N N N N N N -18.464 -23.117 -2.591 0.408   -0.364 -0.891 H222 L70 27 
L70 H022 H5  H  0 0 N N N N N N -19.509 -25.564 -8.546 -4.226  0.431  -0.327 H022 L70 28 
L70 H021 H6  H  0 0 N N N N N N -19.307 -26.346 -6.941 -3.730  -0.258 -1.891 H021 L70 29 
L70 H031 H7  H  0 0 N N N N N N -17.120 -25.697 -7.707 -3.947  -1.790 0.740  H031 L70 30 
L70 H032 H8  H  0 0 N N N N N N -17.692 -24.050 -8.138 -3.450  -2.479 -0.824 H032 L70 31 
L70 H061 H9  H  0 0 N N N N N N -17.574 -25.312 -2.734 0.192   -0.616 1.538  H061 L70 32 
L70 H071 H10 H  0 0 N N N N N N -15.532 -25.477 -4.534 0.460   -2.856 2.590  H071 L70 33 
L70 H072 H11 H  0 0 N N N N N N -15.358 -25.436 -2.747 0.989   -3.518 1.024  H072 L70 34 
L70 H081 H12 H  0 0 N N N N N N -13.936 -23.776 -4.034 2.365   -1.254 2.542  H081 L70 35 
L70 H082 H13 H  0 0 N N N N N N -15.464 -22.931 -4.453 2.928   -2.942 2.475  H082 L70 36 
L70 H091 H14 H  0 0 N N N N N N -14.549 -23.707 -1.627 4.088   -1.444 0.813  H091 L70 37 
L70 H092 H15 H  0 0 N N N N N N -14.503 -22.051 -2.322 3.213   -2.794 0.045  H092 L70 38 
L70 H041 H16 H  0 0 N N N N N N -16.939 -23.507 -6.030 -1.788  -0.266 -0.258 H041 L70 39 
L70 H141 H17 H  0 0 N N N N N N -19.105 -19.732 -1.894 2.901   2.402  0.587  H141 L70 40 
L70 H142 H18 H  0 0 N N N N N N -17.504 -19.944 -1.654 4.175   3.423  0.984  H142 L70 41 
L70 S1   S2  S  0 1 N Y N N N N ?       ?       ?      -6.748  -1.014 0.632  S1   L70 42 
L70 C2   C16 C  0 1 N Y N N N N ?       ?       ?      -7.269  0.709  0.855  C2   L70 43 
L70 C3   C17 C  0 1 N Y N N N N ?       ?       ?      -8.456  1.006  -0.064 C3   L70 44 
L70 N1   N4  N  0 1 N Y N N N N ?       ?       ?      -8.878  2.401  0.116  N1   L70 45 
L70 C5   C18 C  0 1 N Y N N N N ?       ?       ?      -7.837  3.330  -0.345 C5   L70 46 
L70 C6   C19 C  0 1 N Y N N N N ?       ?       ?      -10.153 2.658  -0.566 C6   L70 47 
L70 H1   H19 H  0 1 N Y N N N N ?       ?       ?      -7.564  0.868  1.892  H1   L70 48 
L70 H2   H20 H  0 1 N Y N N N N ?       ?       ?      -6.442  1.374  0.607  H2   L70 49 
L70 H3   H21 H  0 1 N Y N N N N ?       ?       ?      -8.161  0.847  -1.101 H3   L70 50 
L70 H4   H22 H  0 1 N Y N N N N ?       ?       ?      -9.283  0.341  0.184  H4   L70 51 
L70 H5   H23 H  0 1 N Y N N N N ?       ?       ?      -7.641  3.158  -1.403 H5   L70 52 
L70 H6   H24 H  0 1 N Y N N N N ?       ?       ?      -8.176  4.356  -0.200 H6   L70 53 
L70 H7   H25 H  0 1 N Y N N N N ?       ?       ?      -6.924  3.165  0.226  H7   L70 54 
L70 H8   H26 H  0 1 N Y N N N N ?       ?       ?      -10.923 2.004  -0.156 H8   L70 55 
L70 H9   H27 H  0 1 N Y N N N N ?       ?       ?      -10.442 3.698  -0.417 H9   L70 56 
L70 H10  H28 H  0 1 N Y N N N N ?       ?       ?      -10.040 2.462  -1.633 H10  L70 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L70 C02  C03  SING N N 1  
L70 C02  S01  SING N N 2  
L70 C03  N04  SING N N 3  
L70 N04  C05  SING N N 4  
L70 O23  C05  DOUB N N 5  
L70 C05  C06  SING N N 6  
L70 C08  C07  SING N N 7  
L70 C08  C09  SING N N 8  
L70 C07  C06  SING N N 9  
L70 C06  C22  SING N N 10 
L70 C22  N10  SING N N 11 
L70 C09  N10  SING N N 12 
L70 N10  C11  SING N N 13 
L70 N14  C13  SING N N 14 
L70 C11  O21  DOUB N N 15 
L70 C11  C12  SING N N 16 
L70 C13  C12  DOUB Y N 17 
L70 C13  C15  SING Y N 18 
L70 CL16 C15  SING N N 19 
L70 C12  C20  SING Y N 20 
L70 C15  C17  DOUB Y N 21 
L70 C20  C18  DOUB Y N 22 
L70 C17  C18  SING Y N 23 
L70 C18  CL19 SING N N 24 
L70 C17  H171 SING N N 25 
L70 C20  H201 SING N N 26 
L70 C22  H221 SING N N 27 
L70 C22  H222 SING N N 28 
L70 C02  H022 SING N N 29 
L70 C02  H021 SING N N 30 
L70 C03  H031 SING N N 31 
L70 C03  H032 SING N N 32 
L70 C06  H061 SING N N 33 
L70 C07  H071 SING N N 34 
L70 C07  H072 SING N N 35 
L70 C08  H081 SING N N 36 
L70 C08  H082 SING N N 37 
L70 C09  H091 SING N N 38 
L70 C09  H092 SING N N 39 
L70 N04  H041 SING N N 40 
L70 N14  H141 SING N N 41 
L70 N14  H142 SING N N 42 
L70 S01  S1   SING N N 43 
L70 S1   C2   SING N N 44 
L70 C2   C3   SING N N 45 
L70 C3   N1   SING N N 46 
L70 N1   C5   SING N N 47 
L70 N1   C6   SING N N 48 
L70 C2   H1   SING N N 49 
L70 C2   H2   SING N N 50 
L70 C3   H3   SING N N 51 
L70 C3   H4   SING N N 52 
L70 C5   H5   SING N N 53 
L70 C5   H6   SING N N 54 
L70 C5   H7   SING N N 55 
L70 C6   H8   SING N N 56 
L70 C6   H9   SING N N 57 
L70 C6   H10  SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L70 InChI            InChI                1.06    "InChI=1S/C19H28Cl2N4O2S2/c1-24(2)7-9-29-28-8-5-23-18(26)13-4-3-6-25(12-13)19(27)15-10-14(20)11-16(21)17(15)22/h10-11,13H,3-9,12,22H2,1-2H3,(H,23,26)/t13-/m0/s1" 
L70 InChIKey         InChI                1.06    CPSPVIZMUGBZBR-ZDUSSCGKSA-N                                                                                                                                       
L70 SMILES_CANONICAL CACTVS               3.385   "CN(C)CCSSCCNC(=O)[C@H]1CCCN(C1)C(=O)c2cc(Cl)cc(Cl)c2N"                                                                                                           
L70 SMILES           CACTVS               3.385   "CN(C)CCSSCCNC(=O)[CH]1CCCN(C1)C(=O)c2cc(Cl)cc(Cl)c2N"                                                                                                            
L70 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN(C)CCSSCCNC(=O)[C@H]1CCCN(C1)C(=O)c2cc(cc(c2N)Cl)Cl"                                                                                                           
L70 SMILES           "OpenEye OEToolkits" 3.1.0.0 "CN(C)CCSSCCNC(=O)C1CCCN(C1)C(=O)c2cc(cc(c2N)Cl)Cl"                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           L70 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(3~{S})-1-[2-azanyl-3,5-bis(chloranyl)phenyl]carbonyl-~{N}-[2-[2-(dimethylamino)ethyldisulfanyl]ethyl]piperidine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L70 "Create component"  2022-06-20 PDBE 
L70 "Modify descriptor" 2022-08-22 RCSB 
L70 "Initial release"   2023-04-26 RCSB 
L70 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            L70 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               S01 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
