data_M60
# 
_chem_comp.id                                    M60 
_chem_comp.name                                  "(4S)-5-[[(2S)-1-[2-(carboxymethyl)-2-[(3S)-3-hydroxy-4-oxo-4-(phenethylamino)butanoyl]hydrazinyl]-3-methyl-1-oxo-butan-2-yl]amino]-5-oxo-4-(phenylmethoxycarbonylamino)pentanoic acid" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H41 N5 O11" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Cbz-GLU-VAL-azaASP-(S,S)EP-CO-NHCH2CH2Ph" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-08 
_chem_comp.pdbx_modified_date                    2023-09-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        671.695 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M60 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2CNO 
_chem_comp.pdbx_subcomponent_list                "PHQ GLU VAL MY0 PEA" 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M60 C11  C11  C 0 1 N N N 42.005 30.760 23.986 4.798  1.204  -0.378 C1    PHQ 1  
M60 O11  O11  O 0 1 N N N 42.540 31.610 23.284 4.925  1.782  -1.440 O1    PHQ 2  
M60 O21  O21  O 0 1 N N N 42.412 29.461 24.166 5.878  0.701  0.248  O2    PHQ 3  
M60 C21  C21  C 0 1 N N N 43.598 29.017 23.445 7.163  0.885  -0.402 C2    PHQ 4  
M60 C31  C31  C 0 1 Y N N 43.977 27.546 23.727 8.245  0.260  0.439  C3    PHQ 5  
M60 C81  C81  C 0 1 Y N N 45.139 27.009 23.051 8.892  1.011  1.402  C4    PHQ 6  
M60 C71  C71  C 0 1 Y N N 45.556 25.639 23.267 9.882  0.436  2.178  C5    PHQ 7  
M60 C61  C61  C 0 1 Y N N 44.809 24.792 24.169 10.232 -0.887 1.982  C6    PHQ 8  
M60 C51  C51  C 0 1 Y N N 43.643 25.316 24.852 9.590  -1.636 1.015  C7    PHQ 9  
M60 C41  C41  C 0 1 Y N N 43.226 26.685 24.635 8.596  -1.063 0.243  C8    PHQ 10 
M60 N1   N1   N 0 1 N N N 41.006 30.422 24.787 3.575  1.068  0.172  N     GLU 11 
M60 CA2  CA2  C 0 1 N N S 39.945 31.344 25.175 2.400  1.617  -0.510 CA    GLU 12 
M60 C20  C20  C 0 1 N N N 39.568 31.125 26.635 1.315  1.889  0.500  C     GLU 13 
M60 O2   O2   O 0 1 N N N 39.442 29.989 27.092 1.505  1.649  1.673  O     GLU 14 
M60 CB2  CB2  C 0 1 N N N 38.710 31.156 24.282 1.893  0.608  -1.543 CB    GLU 15 
M60 CG2  CG2  C 0 1 N N N 38.868 31.719 22.872 2.947  0.426  -2.637 CG    GLU 16 
M60 CD2  CD2  C 0 1 N N N 37.632 31.525 22.008 2.448  -0.567 -3.655 CD    GLU 17 
M60 OZ1  OZ1  O 0 1 N N N 37.761 30.916 20.926 1.360  -1.077 -3.519 OE1   GLU 18 
M60 OZ2  OZ2  O 0 1 N N N 36.536 31.982 22.404 3.211  -0.886 -4.712 OE2   GLU 19 
M60 N3   N3   N 0 1 N N N 39.395 32.221 27.364 0.134  2.400  0.099  N     VAL 20 
M60 CA3  CA3  C 0 1 N N S 39.036 32.143 28.771 -0.921 2.665  1.081  CA    VAL 21 
M60 C30  C30  C 0 1 N N N 37.581 32.526 29.007 -2.264 2.629  0.397  C     VAL 22 
M60 O3   O3   O 0 1 N N N 36.977 33.262 28.223 -2.331 2.691  -0.812 O     VAL 23 
M60 CB3  CB3  C 0 1 N N N 39.936 33.056 29.633 -0.702 4.045  1.704  CB    VAL 24 
M60 CZ1  CZ1  C 0 1 N N N 41.369 32.556 29.591 -1.731 4.273  2.813  CG1   VAL 25 
M60 CZ2  CZ2  C 0 1 N N N 39.858 34.491 29.133 0.708  4.122  2.292  CG2   VAL 26 
M60 N4   N4   N 0 1 N N N 36.919 32.096 30.044 -3.390 2.527  1.130  N     MY0 27 
M60 N5   N5   N 0 1 N N N 35.721 32.078 30.764 -4.642 2.612  0.507  N5    MY0 28 
M60 O5   O5   O 0 1 N N N 37.541 37.067 32.064 -5.811 -2.938 1.685  O     MY0 29 
M60 O6   O6   O 0 1 N N N 34.211 33.145 32.130 -6.462 1.572  -0.220 O4    MY0 30 
M60 O7   O7   O 0 1 N N N 33.845 29.435 29.123 -5.181 5.231  -2.029 O7    MY0 31 
M60 O8   O8   O 0 1 N N N 33.901 31.614 28.638 -4.209 3.247  -1.999 O8    MY0 32 
M60 O9   O9   O 0 1 N N N 34.650 36.295 31.438 -7.071 -0.704 1.210  O2    MY0 33 
M60 C3   C3   C 0 1 N N N 36.161 34.433 31.487 -4.856 0.163  0.783  C3    MY0 34 
M60 C12  C12  C 0 1 N N N 34.983 30.812 30.698 -5.149 3.911  0.057  C5    MY0 35 
M60 C1   C1   C 0 1 N N N 36.650 36.602 32.775 -5.306 -2.275 0.804  C     MY0 36 
M60 C16  C16  C 0 1 N N N 35.270 33.185 31.495 -5.379 1.499  0.320  C4    MY0 37 
M60 C17  C17  C 0 1 N N N 34.206 30.702 29.401 -4.812 4.105  -1.399 C6    MY0 38 
M60 C2   C2   C 0 1 N N S 35.576 35.605 32.286 -5.879 -0.926 0.454  C2    MY0 39 
M60 C44  C44  C 0 1 Y N N 37.497 39.544 36.714 -1.897 -5.696 -0.067 "C1'" PEA 40 
M60 C34  C34  C 0 1 Y N N 38.002 39.165 37.996 -2.357 -6.831 -0.710 "C6'" PEA 41 
M60 C23  C23  C 0 1 Y N N 38.852 40.037 38.730 -1.832 -8.068 -0.388 "C5'" PEA 42 
M60 C13  C13  C 0 1 Y N N 39.207 41.298 38.192 -0.846 -8.171 0.576  "C4'" PEA 43 
M60 C64  C64  C 0 1 Y N N 38.712 41.691 36.921 -0.390 -7.038 1.222  "C3'" PEA 44 
M60 C54  C54  C 0 1 Y N N 37.857 40.819 36.180 -0.911 -5.799 0.896  "C2'" PEA 45 
M60 C77  C77  C 0 1 N N N 36.597 38.604 35.941 -2.470 -4.347 -0.418 C2    PEA 46 
M60 C14  C14  C 0 1 N N N 37.355 37.824 34.854 -3.675 -4.056 0.480  C1    PEA 47 
M60 N6   N6   N 0 1 N N N 36.487 36.913 34.126 -4.232 -2.744 0.139  N     PEA 48 
M60 H21  H21  H 0 1 N N N 44.442 29.653 23.750 7.145  0.409  -1.383 H21   PHQ 49 
M60 H21A H21A H 0 0 N N N 43.402 29.120 22.367 7.362  1.950  -0.518 H22   PHQ 50 
M60 H81  H81  H 0 1 N N N 45.702 27.638 22.377 8.621  2.046  1.552  H41   PHQ 51 
M60 H71  H71  H 0 1 N N N 46.424 25.251 22.755 10.384 1.022  2.934  H51   PHQ 52 
M60 H61  H61  H 0 1 N N N 45.119 23.771 24.334 11.008 -1.334 2.586  H61   PHQ 53 
M60 H51  H51  H 0 1 N N N 43.084 24.683 25.525 9.863  -2.670 0.862  H71   PHQ 54 
M60 H41  H41  H 0 1 N N N 42.356 27.070 25.147 8.094  -1.649 -0.512 H81   PHQ 55 
M60 HN1  HN1  H 0 1 N N N 40.978 29.488 25.143 3.472  0.604  1.017  H     GLU 56 
M60 HA2  HA2  H 0 1 N N N 40.316 32.372 25.048 2.671  2.545  -1.012 HA    GLU 57 
M60 HB2  HB2  H 0 1 N N N 38.515 30.077 24.196 1.706  -0.349 -1.056 HB2   GLU 58 
M60 HB2A HB2A H 0 0 N N N 37.864 31.672 24.760 0.968  0.977  -1.987 HB3   GLU 59 
M60 HG2  HG2  H 0 1 N N N 39.066 32.798 22.952 3.134  1.382  -3.125 HG2   GLU 60 
M60 HG2A HG2A H 0 0 N N N 39.711 31.204 22.388 3.871  0.057  -2.193 HG3   GLU 61 
M60 HOZ2 HOZ2 H 0 0 N N N 35.862 31.789 21.763 2.848  -1.528 -5.338 HE2   GLU 62 
M60 HN3  HN3  H 0 1 N N N 39.514 33.118 26.937 -0.018 2.592  -0.840 H     VAL 63 
M60 HA3  HA3  H 0 1 N N N 39.183 31.094 29.069 -0.890 1.905  1.861  HA    VAL 64 
M60 HB3  HB3  H 0 1 N N N 39.583 33.030 30.674 -0.819 4.812  0.938  HB    VAL 65 
M60 HZ1  HZ1  H 0 1 N N N 42.004 33.210 30.206 -1.677 3.455  3.532  HG11  VAL 66 
M60 HZ1A HZ1A H 0 0 N N N 41.411 31.529 29.984 -1.518 5.215  3.318  HG12  VAL 67 
M60 HZ1B HZ1B H 0 0 N N N 41.730 32.566 28.552 -2.730 4.310  2.380  HG13  VAL 68 
M60 HZ2  HZ2  H 0 1 N N N 40.502 35.132 29.753 1.441  3.960  1.501  HG21  VAL 69 
M60 HZ2A HZ2A H 0 0 N N N 40.197 34.534 28.087 0.863  5.105  2.736  HG22  VAL 70 
M60 HZ2B HZ2B H 0 0 N N N 38.819 34.845 29.197 0.824  3.355  3.058  HG23  VAL 71 
M60 HN4  HN4  H 0 1 N N N 37.555 31.518 30.555 -3.334 2.396  2.090  H     MY0 72 
M60 HO7  HO7  H 0 1 N N N 33.362 29.415 28.305 -4.942 5.311  -2.963 HO7   MY0 73 
M60 HO9  HO9  H 0 1 N N N 34.272 37.028 31.911 -6.938 -0.718 2.167  HO2   MY0 74 
M60 H10  H10  H 0 1 N N N 37.131 34.165 31.931 -3.917 -0.055 0.276  H3    MY0 75 
M60 H10A H10A H 0 0 N N N 36.287 34.758 30.444 -4.689 0.192  1.860  H3A   MY0 76 
M60 H12  H12  H 0 1 N N N 35.698 29.978 30.758 -6.231 3.942  0.186  H5    MY0 77 
M60 H12A H12A H 0 0 N N N 34.279 30.765 31.542 -4.690 4.704  0.646  H5A   MY0 78 
M60 H94  H94  H 0 1 N N N 35.091 35.195 33.184 -6.112 -0.896 -0.610 H20   MY0 79 
M60 H34  H34  H 0 1 N N N 37.735 38.205 38.412 -3.127 -6.750 -1.463 "H6'" PEA 80 
M60 H23  H23  H 0 1 N N N 39.227 39.738 39.698 -2.192 -8.954 -0.890 "H5'" PEA 81 
M60 H13  H13  H 0 1 N N N 39.854 41.960 38.748 -0.436 -9.138 0.826  "H4'" PEA 82 
M60 H64  H64  H 0 1 N N N 38.983 42.653 36.512 0.380  -7.118 1.974  "H3'" PEA 83 
M60 H54  H54  H 0 1 N N N 37.482 41.124 35.214 -0.552 -4.913 1.398  "H2'" PEA 84 
M60 H77  H77  H 0 1 N N N 35.807 39.197 35.457 -2.786 -4.346 -1.461 H21   PEA 85 
M60 H77A H77A H 0 0 N N N 36.159 37.882 36.646 -1.711 -3.580 -0.267 H22   PEA 86 
M60 H14  H14  H 0 1 N N N 38.153 37.239 35.335 -3.359 -4.057 1.523  H11   PEA 87 
M60 H14A H14A H 0 0 N N N 37.784 38.544 34.141 -4.434 -4.823 0.329  H12   PEA 88 
M60 HN6  HN6  H 0 1 N N N 35.731 36.485 34.621 -3.828 -2.214 -0.565 HN1   PEA 89 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M60 C11 N1   SING N N 1  
M60 N1  CA2  SING N N 2  
M60 N1  HN1  SING N N 3  
M60 CA2 C20  SING N N 4  
M60 C20 O2   DOUB N N 5  
M60 C20 N3   SING N N 6  
M60 O3  C30  DOUB N N 7  
M60 CA3 C30  SING N N 8  
M60 C30 N4   SING N N 9  
M60 N3  CA3  SING N N 10 
M60 N3  HN3  SING N N 11 
M60 N4  N5   SING N N 12 
M60 N4  HN4  SING N N 13 
M60 C12 N5   SING N N 14 
M60 N5  C16  SING N N 15 
M60 O5  C1   DOUB N N 16 
M60 C1  N6   SING N N 17 
M60 N6  C14  SING N N 18 
M60 N6  HN6  SING N N 19 
M60 C16 O6   DOUB N N 20 
M60 O7  C17  SING N N 21 
M60 O7  HO7  SING N N 22 
M60 O8  C17  DOUB N N 23 
M60 O9  C2   SING N N 24 
M60 O9  HO9  SING N N 25 
M60 C3  C16  SING N N 26 
M60 C3  C2   SING N N 27 
M60 C3  H10  SING N N 28 
M60 C3  H10A SING N N 29 
M60 O11 C11  DOUB N N 30 
M60 C11 O21  SING N N 31 
M60 C17 C12  SING N N 32 
M60 C12 H12  SING N N 33 
M60 C12 H12A SING N N 34 
M60 C64 C13  DOUB Y N 35 
M60 C13 C23  SING Y N 36 
M60 C13 H13  SING N N 37 
M60 C14 C77  SING N N 38 
M60 C14 H14  SING N N 39 
M60 C14 H14A SING N N 40 
M60 C2  C1   SING N N 41 
M60 C21 C31  SING N N 42 
M60 C21 O21  SING N N 43 
M60 C21 H21  SING N N 44 
M60 C21 H21A SING N N 45 
M60 C34 C23  DOUB Y N 46 
M60 C23 H23  SING N N 47 
M60 C81 C31  DOUB Y N 48 
M60 C31 C41  SING Y N 49 
M60 C44 C34  SING Y N 50 
M60 C34 H34  SING N N 51 
M60 C41 C51  DOUB Y N 52 
M60 C41 H41  SING N N 53 
M60 C77 C44  SING N N 54 
M60 C54 C44  DOUB Y N 55 
M60 C61 C51  SING Y N 56 
M60 C51 H51  SING N N 57 
M60 C54 C64  SING Y N 58 
M60 C54 H54  SING N N 59 
M60 C71 C61  DOUB Y N 60 
M60 C61 H61  SING N N 61 
M60 C64 H64  SING N N 62 
M60 C81 C71  SING Y N 63 
M60 C71 H71  SING N N 64 
M60 C77 H77  SING N N 65 
M60 C77 H77A SING N N 66 
M60 C81 H81  SING N N 67 
M60 C2  H94  SING N N 68 
M60 CB2 CA2  SING N N 69 
M60 CA2 HA2  SING N N 70 
M60 CA3 CB3  SING N N 71 
M60 CA3 HA3  SING N N 72 
M60 CG2 CB2  SING N N 73 
M60 CB2 HB2  SING N N 74 
M60 CB2 HB2A SING N N 75 
M60 CZ2 CB3  SING N N 76 
M60 CZ1 CB3  SING N N 77 
M60 CB3 HB3  SING N N 78 
M60 OZ1 CD2  DOUB N N 79 
M60 CD2 OZ2  SING N N 80 
M60 CD2 CG2  SING N N 81 
M60 CG2 HG2  SING N N 82 
M60 CG2 HG2A SING N N 83 
M60 CZ1 HZ1  SING N N 84 
M60 CZ1 HZ1A SING N N 85 
M60 CZ1 HZ1B SING N N 86 
M60 CZ2 HZ2  SING N N 87 
M60 CZ2 HZ2A SING N N 88 
M60 CZ2 HZ2B SING N N 89 
M60 OZ2 HOZ2 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M60 SMILES           ACDLabs              12.01 "O=C(NCCc1ccccc1)C(O)CC(=O)N(NC(=O)C(NC(=O)C(NC(=O)OCc2ccccc2)CCC(=O)O)C(C)C)CC(=O)O"                                                                                                                                                                                              
M60 SMILES_CANONICAL CACTVS               3.370 "CC(C)[C@H](NC(=O)[C@H](CCC(O)=O)NC(=O)OCc1ccccc1)C(=O)NN(CC(O)=O)C(=O)C[C@H](O)C(=O)NCCc2ccccc2"                                                                                                                                                                                  
M60 SMILES           CACTVS               3.370 "CC(C)[CH](NC(=O)[CH](CCC(O)=O)NC(=O)OCc1ccccc1)C(=O)NN(CC(O)=O)C(=O)C[CH](O)C(=O)NCCc2ccccc2"                                                                                                                                                                                     
M60 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)[C@@H](C(=O)NN(CC(=O)O)C(=O)C[C@@H](C(=O)NCCc1ccccc1)O)NC(=O)[C@H](CCC(=O)O)NC(=O)OCc2ccccc2"                                                                                                                                                                                
M60 SMILES           "OpenEye OEToolkits" 1.7.0 "CC(C)C(C(=O)NN(CC(=O)O)C(=O)CC(C(=O)NCCc1ccccc1)O)NC(=O)C(CCC(=O)O)NC(=O)OCc2ccccc2"                                                                                                                                                                                              
M60 InChI            InChI                1.03  "InChI=1S/C32H41N5O11/c1-20(2)28(35-29(44)23(13-14-26(40)41)34-32(47)48-19-22-11-7-4-8-12-22)31(46)36-37(18-27(42)43)25(39)17-24(38)30(45)33-16-15-21-9-5-3-6-10-21/h3-12,20,23-24,28,38H,13-19H2,1-2H3,(H,33,45)(H,34,47)(H,35,44)(H,36,46)(H,40,41)(H,42,43)/t23-,24-,28-/m0/s1" 
M60 InChIKey         InChI                1.03  WAYWBQVKFMZBCU-QONNDPFASA-N                                                                                                                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
M60 "SYSTEMATIC NAME" ACDLabs              12.01 "(5S,8S)-5-(2-carboxyethyl)-11-{(3S)-3-hydroxy-4-oxo-4-[(2-phenylethyl)amino]butanoyl}-3,6,9-trioxo-1-phenyl-8-(propan-2-yl)-2-oxa-4,7,10,11-tetraazatridecan-13-oic acid (non-preferred name)" 
M60 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(4S)-5-[[(2S)-1-[2-(carboxymethyl)-2-[(3S)-3-hydroxy-4-oxo-4-(phenethylamino)butanoyl]hydrazinyl]-3-methyl-1-oxo-butan-2-yl]amino]-5-oxo-4-(phenylmethoxycarbonylamino)pentanoic acid"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M60 "Create component"     2010-11-08 RCSB 
M60 "Modify aromatic_flag" 2011-06-04 RCSB 
M60 "Modify descriptor"    2011-06-04 RCSB 
M60 "Modify synonyms"      2021-03-13 RCSB 
M60 "Obsolete component"   2023-08-15 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      M60 
_pdbx_chem_comp_synonyms.name         "Cbz-GLU-VAL-azaASP-(S,S)EP-CO-NHCH2CH2Ph" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
