data_MJ0
# 
_chem_comp.id                                    MJ0 
_chem_comp.name                                  "(2R,3S)-3-[[(2S)-3-cyclopropyl-2-[2-oxidanylidene-3-(3-phenylpropanoylamino)pyridin-1-yl]propanoyl]amino]-N-methyl-2-oxidanyl-4-[(3S)-2-oxidanylidenepyrrolidin-3-yl]butanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H37 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(S)-3-((S)-3-cyclopropyl-2-(2-oxo-3-(3-phenylpropanamido)pyridin-1(2H)-yl)propanamido)-N-methyl-2-oxo-4-((S)-2-oxopyrrolidin-3-yl)butanamide; RK-90 inhibitor (covalently bound to protein)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        551.634 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MJ0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AJ0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MJ0 N1  N1  N 0 1 N N N N N N -3.094 -0.401  12.738 0.234  2.233  -0.115 N1  MJ0 1  
MJ0 N3  N2  N 0 1 N N N N N N -1.115 1.803   14.780 -2.892 0.375  0.516  N3  MJ0 2  
MJ0 C4  C1  C 0 1 N N N N N N -2.589 -1.652  13.105 1.512  1.846  0.056  C4  MJ0 3  
MJ0 C5  C2  C 0 1 N N N N N N -4.402 -0.225  12.374 -0.100 3.118  -1.092 C5  MJ0 4  
MJ0 C6  C3  C 0 1 N N N N N N -3.709 -5.010  13.836 4.196  0.671  -0.709 C6  MJ0 5  
MJ0 C7  C4  C 0 1 N N N N N N -2.953 -6.290  14.111 5.608  0.235  -0.416 C7  MJ0 6  
MJ0 C8  C5  C 0 1 N N N N N N -2.521 -7.010  12.850 5.723  -1.280 -0.603 C8  MJ0 7  
MJ0 C10 C6  C 0 1 N N N N N N -2.214 1.230   14.273 -1.832 0.960  -0.077 C10 MJ0 8  
MJ0 C13 C7  C 0 1 N N N N N N -0.061 1.569   16.973 -4.487 -1.479 0.524  C13 MJ0 9  
MJ0 C15 C8  C 0 1 N N N N N N -1.610 -0.429  17.470 -2.778 -3.123 -0.350 C15 MJ0 10 
MJ0 C17 C9  C 0 1 N N N N N N 0.754  -0.797  17.517 -3.961 -3.625 1.694  C17 MJ0 11 
MJ0 C20 C10 C 0 1 N N N N N N -2.523 1.872   11.807 -1.491 2.834  1.511  C20 MJ0 12 
MJ0 C21 C11 C 0 1 N N N N N N -2.313 1.448   10.366 -0.482 3.496  2.451  C21 MJ0 13 
MJ0 C22 C12 C 0 1 N N N N N N -2.539 2.399   9.225  -0.939 4.741  3.214  C22 MJ0 14 
MJ0 C24 C13 C 0 1 Y N N N N N -3.658 -7.554  12.017 7.135  -1.716 -0.310 C24 MJ0 15 
MJ0 C26 C14 C 0 1 Y N N N N N -5.373 -7.241  10.346 9.371  -2.142 -1.055 C26 MJ0 16 
MJ0 C28 C15 C 0 1 Y N N N N N -5.125 -9.367  11.394 8.790  -2.480 1.243  C28 MJ0 17 
MJ0 C1  C16 C 0 1 N N N N N N -5.258 -1.259  12.307 0.844  3.634  -1.912 C1  MJ0 18 
MJ0 C2  C17 C 0 1 N N N N N N -4.801 -2.528  12.625 2.186  3.258  -1.760 C2  MJ0 19 
MJ0 C3  C18 C 0 1 N N N N N N -3.477 -2.703  13.037 2.523  2.364  -0.781 C3  MJ0 20 
MJ0 N2  N3  N 0 1 N N N N N N -2.976 -3.969  13.398 3.858  1.972  -0.608 N2  MJ0 21 
MJ0 C9  C19 C 0 1 N N S N N N -2.196 0.763   12.820 -0.811 1.690  0.757  C9  MJ0 22 
MJ0 C11 C20 C 0 1 N N S N N N -1.061 2.349   16.124 -3.885 -0.335 -0.294 C11 MJ0 23 
MJ0 C12 C21 C 0 1 N N R N N N -0.787 3.864   16.052 -4.993 0.635  -0.708 C12 MJ0 24 
MJ0 C14 C22 C 0 1 N N S N N N -0.313 0.076   16.886 -3.384 -2.465 0.911  C14 MJ0 25 
MJ0 C16 C23 C 0 1 N N N N N N -1.216 -1.331  18.625 -2.506 -4.561 0.144  C16 MJ0 26 
MJ0 N4  N4  N 0 1 N N N N N N 0.221  -1.514  18.466 -3.456 -4.785 1.240  N4  MJ0 27 
MJ0 O1  O1  O 0 1 N N N N N N -1.540 4.547   15.055 -4.434 1.689  -1.495 O1  MJ0 28 
MJ0 C18 C24 C 0 1 N N N N N N -0.958 4.503   17.413 -6.029 -0.101 -1.517 C18 MJ0 29 
MJ0 N5  N5  N 0 1 N N N N N N -1.865 5.451   17.580 -6.861 -0.973 -0.914 N5  MJ0 30 
MJ0 C19 C25 C 0 1 N N N N N N -3.103 5.561   16.826 -7.803 -1.760 -1.714 C19 MJ0 31 
MJ0 C23 C26 C 0 1 N N N N N N -1.155 1.973   9.569  -0.757 3.414  3.954  C23 MJ0 32 
MJ0 O2  O2  O 0 1 N N N N N N -4.917 -4.937  13.949 3.363  -0.149 -1.035 O2  MJ0 33 
MJ0 O3  O3  O 0 1 N N N N N N -1.415 -1.744  13.431 1.796  1.047  0.935  O3  MJ0 34 
MJ0 O4  O4  O 0 1 N N N N N N -3.211 1.018   14.958 -1.701 0.900  -1.281 O4  MJ0 35 
MJ0 O5  O5  O 0 1 N N N N N N 1.949  -0.841  17.170 -4.761 -3.522 2.599  O5  MJ0 36 
MJ0 O6  O6  O 0 1 N N N N N N -0.170 4.157   18.292 -6.115 0.091  -2.712 O6  MJ0 37 
MJ0 C25 C27 C 0 1 Y N N N N N -4.321 -6.748  11.101 8.074  -1.747 -1.325 C25 MJ0 38 
MJ0 C27 C28 C 0 1 Y N N N N N -5.774 -8.546  10.495 9.730  -2.505 0.229  C27 MJ0 39 
MJ0 C29 C29 C 0 1 Y N N N N N -4.069 -8.876  12.147 7.494  -2.080 0.974  C29 MJ0 40 
MJ0 H1  H1  H 0 1 N N N N N N -0.296 1.857   14.208 -2.997 0.423  1.479  H1  MJ0 41 
MJ0 H2  H2  H 0 1 N N N N N N -4.754 0.768   12.135 -1.132 3.412  -1.215 H2  MJ0 42 
MJ0 H3  H3  H 0 1 N N N N N N -3.602 -6.962  14.692 6.293  0.738  -1.098 H3  MJ0 43 
MJ0 H4  H4  H 0 1 N N N N N N -2.056 -6.047  14.700 5.863  0.494  0.612  H4  MJ0 44 
MJ0 H5  H5  H 0 1 N N N N N N -1.874 -7.851  13.139 5.038  -1.783 0.080  H5  MJ0 45 
MJ0 H6  H6  H 0 1 N N N N N N -1.949 -6.304  12.230 5.468  -1.539 -1.630 H6  MJ0 46 
MJ0 H7  H7  H 0 1 N N N N N N 0.957  1.782   16.615 -4.949 -1.077 1.426  H7  MJ0 47 
MJ0 H8  H8  H 0 1 N N N N N N -0.155 1.888   18.022 -5.242 -1.993 -0.072 H8  MJ0 48 
MJ0 H9  H9  H 0 1 N N N N N N -2.221 0.411   17.831 -3.494 -3.122 -1.172 H9  MJ0 49 
MJ0 H10 H10 H 0 1 N N N N N N -2.175 -0.996  16.716 -1.852 -2.628 -0.642 H10 MJ0 50 
MJ0 H11 H11 H 0 1 N N N N N N -1.876 2.737   12.015 -2.326 2.441  2.092  H11 MJ0 51 
MJ0 H12 H12 H 0 1 N N N N N N -3.576 2.163   11.936 -1.861 3.571  0.798  H12 MJ0 52 
MJ0 H13 H13 H 0 1 N N N N N N -2.582 0.403   10.154 0.558  3.458  2.128  H13 MJ0 53 
MJ0 H14 H14 H 0 1 N N N N N N -2.862 3.431   9.426  -0.200 5.522  3.392  H14 MJ0 54 
MJ0 H15 H15 H 0 1 N N N N N N -3.009 2.042   8.297  -1.959 5.089  3.047  H15 MJ0 55 
MJ0 H16 H16 H 0 1 N N N N N N -5.878 -6.599  9.640  10.105 -2.161 -1.847 H16 MJ0 56 
MJ0 H17 H17 H 0 1 N N N N N N -5.440 -10.393 11.511 9.070  -2.765 2.246  H17 MJ0 57 
MJ0 H18 H18 H 0 1 N N N N N N -6.285 -1.103  12.010 0.564  4.336  -2.683 H18 MJ0 58 
MJ0 H19 H19 H 0 1 N N N N N N -5.464 -3.377  12.555 2.944  3.666  -2.412 H19 MJ0 59 
MJ0 H20 H20 H 0 1 N N N N N N -1.988 -4.107  13.322 4.538  2.636  -0.416 H20 MJ0 60 
MJ0 H21 H21 H 0 1 N N N N N N -1.175 0.417   12.602 -0.364 0.999  1.472  H21 MJ0 61 
MJ0 H22 H22 H 0 1 N N N N N N -2.051 2.221   16.586 -3.405 -0.739 -1.186 H22 MJ0 62 
MJ0 H23 H23 H 0 1 N N N N N N 0.277  3.969   15.791 -5.459 1.055  0.184  H23 MJ0 63 
MJ0 H24 H24 H 0 1 N N N N N N -0.331 -0.176  15.815 -2.608 -1.961 1.488  H24 MJ0 64 
MJ0 H25 H25 H 0 1 N N N N N N -1.443 -0.852  19.589 -2.681 -5.276 -0.660 H25 MJ0 65 
MJ0 H26 H26 H 0 1 N N N N N N -1.741 -2.296  18.562 -1.482 -4.647 0.507  H26 MJ0 66 
MJ0 H27 H27 H 0 1 N N N N N N 0.754  -2.138  19.038 -3.690 -5.658 1.591  H27 MJ0 67 
MJ0 H28 H28 H 0 1 N N N N N N -1.320 5.471   15.069 -3.759 2.207  -1.036 H28 MJ0 68 
MJ0 H29 H29 H 0 1 N N N N N N -1.686 6.145   18.278 -6.835 -1.080 0.050  H29 MJ0 69 
MJ0 H30 H30 H 0 1 N N N N N N -3.666 6.441   17.171 -8.471 -1.088 -2.253 H30 MJ0 70 
MJ0 H31 H31 H 0 1 N N N N N N -2.872 5.670   15.756 -7.251 -2.372 -2.427 H31 MJ0 71 
MJ0 H32 H32 H 0 1 N N N N N N -3.708 4.655   16.980 -8.387 -2.404 -1.057 H32 MJ0 72 
MJ0 H33 H33 H 0 1 N N N N N N -0.604 1.302   8.894  -1.657 2.888  4.273  H33 MJ0 73 
MJ0 H34 H34 H 0 1 N N N N N N -0.456 2.691   10.023 0.101  3.322  4.619  H34 MJ0 74 
MJ0 H35 H35 H 0 1 N N N N N N -4.012 -5.721  10.975 7.793  -1.463 -2.328 H35 MJ0 75 
MJ0 H36 H36 H 0 1 N N N N N N -6.596 -8.929  9.909  10.743 -2.814 0.440  H36 MJ0 76 
MJ0 H37 H37 H 0 1 N N N N N N -3.560 -9.528  12.842 6.762  -2.052 1.768  H37 MJ0 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MJ0 C22 C23 SING N N 1  
MJ0 C22 C21 SING N N 2  
MJ0 C23 C21 SING N N 3  
MJ0 C26 C27 DOUB Y N 4  
MJ0 C26 C25 SING Y N 5  
MJ0 C21 C20 SING N N 6  
MJ0 C27 C28 SING Y N 7  
MJ0 C25 C24 DOUB Y N 8  
MJ0 C28 C29 DOUB Y N 9  
MJ0 C20 C9  SING N N 10 
MJ0 C24 C29 SING Y N 11 
MJ0 C24 C8  SING N N 12 
MJ0 C1  C5  DOUB N N 13 
MJ0 C1  C2  SING N N 14 
MJ0 C5  N1  SING N N 15 
MJ0 C2  C3  DOUB N N 16 
MJ0 N1  C9  SING N N 17 
MJ0 N1  C4  SING N N 18 
MJ0 C9  C10 SING N N 19 
MJ0 C8  C7  SING N N 20 
MJ0 C3  C4  SING N N 21 
MJ0 C3  N2  SING N N 22 
MJ0 C4  O3  DOUB N N 23 
MJ0 N2  C6  SING N N 24 
MJ0 C6  O2  DOUB N N 25 
MJ0 C6  C7  SING N N 26 
MJ0 C10 N3  SING N N 27 
MJ0 C10 O4  DOUB N N 28 
MJ0 N3  C11 SING N N 29 
MJ0 O1  C12 SING N N 30 
MJ0 C12 C11 SING N N 31 
MJ0 C12 C18 SING N N 32 
MJ0 C11 C13 SING N N 33 
MJ0 C19 N5  SING N N 34 
MJ0 C14 C13 SING N N 35 
MJ0 C14 C15 SING N N 36 
MJ0 C14 C17 SING N N 37 
MJ0 O5  C17 DOUB N N 38 
MJ0 C18 N5  SING N N 39 
MJ0 C18 O6  DOUB N N 40 
MJ0 C15 C16 SING N N 41 
MJ0 C17 N4  SING N N 42 
MJ0 N4  C16 SING N N 43 
MJ0 N3  H1  SING N N 44 
MJ0 C5  H2  SING N N 45 
MJ0 C7  H3  SING N N 46 
MJ0 C7  H4  SING N N 47 
MJ0 C8  H5  SING N N 48 
MJ0 C8  H6  SING N N 49 
MJ0 C13 H7  SING N N 50 
MJ0 C13 H8  SING N N 51 
MJ0 C15 H9  SING N N 52 
MJ0 C15 H10 SING N N 53 
MJ0 C20 H11 SING N N 54 
MJ0 C20 H12 SING N N 55 
MJ0 C21 H13 SING N N 56 
MJ0 C22 H14 SING N N 57 
MJ0 C22 H15 SING N N 58 
MJ0 C26 H16 SING N N 59 
MJ0 C28 H17 SING N N 60 
MJ0 C1  H18 SING N N 61 
MJ0 C2  H19 SING N N 62 
MJ0 N2  H20 SING N N 63 
MJ0 C9  H21 SING N N 64 
MJ0 C11 H22 SING N N 65 
MJ0 C12 H23 SING N N 66 
MJ0 C14 H24 SING N N 67 
MJ0 C16 H25 SING N N 68 
MJ0 C16 H26 SING N N 69 
MJ0 N4  H27 SING N N 70 
MJ0 O1  H28 SING N N 71 
MJ0 N5  H29 SING N N 72 
MJ0 C19 H30 SING N N 73 
MJ0 C19 H31 SING N N 74 
MJ0 C19 H32 SING N N 75 
MJ0 C23 H33 SING N N 76 
MJ0 C23 H34 SING N N 77 
MJ0 C25 H35 SING N N 78 
MJ0 C27 H36 SING N N 79 
MJ0 C29 H37 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MJ0 InChI            InChI                1.06  "InChI=1S/C29H37N5O6/c1-30-28(39)25(36)22(17-20-13-14-31-26(20)37)33-27(38)23(16-19-9-10-19)34-15-5-8-21(29(34)40)32-24(35)12-11-18-6-3-2-4-7-18/h2-8,15,19-20,22-23,25,36H,9-14,16-17H2,1H3,(H,30,39)(H,31,37)(H,32,35)(H,33,38)/t20-,22-,23-,25+/m0/s1" 
MJ0 InChIKey         InChI                1.06  ZZWBXRBGXJAYNA-ALJFMCDRSA-N                                                                                                                                                                                                                               
MJ0 SMILES_CANONICAL CACTVS               3.385 "CNC(=O)[C@H](O)[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(NC(=O)CCc4ccccc4)C3=O"                                                                                                                                                                  
MJ0 SMILES           CACTVS               3.385 "CNC(=O)[CH](O)[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)N3C=CC=C(NC(=O)CCc4ccccc4)C3=O"                                                                                                                                                                       
MJ0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(C3=O)NC(=O)CCc4ccccc4)O"                                                                                                                                                                 
MJ0 SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)C(C(CC1CCNC1=O)NC(=O)C(CC2CC2)N3C=CC=C(C3=O)NC(=O)CCc4ccccc4)O"                                                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           MJ0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxidanylidene-3-(3-phenylpropanoylamino)pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamide" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 MJ0 "(S)-3-((S)-3-cyclopropyl-2-(2-oxo-3-(3-phenylpropanamido)pyridin-1(2H)-yl)propanamido)-N-methyl-2-oxo-4-((S)-2-oxopyrrolidin-3-yl)butanamide" AUTHOR ? 
2 MJ0 "RK-90 inhibitor (covalently bound to protein)"                                                                                                AUTHOR ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MJ0 "Create component"  2022-07-27 PDBE 
MJ0 "Modify synonyms"   2022-08-14 PDBE 
MJ0 "Initial release"   2023-08-16 RCSB 
MJ0 "Modify descriptor" 2023-09-23 RCSB 
MJ0 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            MJ0 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
