data_V40
# 
_chem_comp.id                                    V40 
_chem_comp.name                                  "(2S)-1-{[(1R,2R)-2-(aminomethyl)cyclohexyl]methyl}pyrrolidin-2-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H24 N2 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-29 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        212.332 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V40 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SU8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V40 N1  N1  N 0 1 N N N 25.439 15.911 36.389 1.659  -0.441 -0.192 N1  V40 1  
V40 C7  C1  C 0 1 N N N 25.466 15.935 37.843 0.463  0.357  -0.491 C7  V40 2  
V40 C8  C2  C 0 1 N N N 24.943 17.138 35.846 1.958  -0.426 1.263  C8  V40 3  
V40 C9  C3  C 0 1 N N N 23.477 16.824 35.521 3.454  -0.828 1.321  C9  V40 4  
V40 C1  C4  C 0 1 N N R 27.788 16.468 38.771 -2.005 0.535  -0.143 C1  V40 5  
V40 C5  C5  C 0 1 N N N 26.391 14.600 39.658 -0.976 -1.676 -0.685 C5  V40 6  
V40 C6  C6  C 0 1 N N R 26.756 15.383 38.416 -0.776 -0.354 0.058  C6  V40 7  
V40 C4  C7  C 0 1 N N N 26.881 15.176 40.993 -2.214 -2.387 -0.136 C4  V40 8  
V40 C3  C8  C 0 1 N N N 26.951 16.701 41.095 -3.444 -1.499 -0.337 C3  V40 9  
V40 C2  C9  C 0 1 N N N 27.164 17.408 39.768 -3.243 -0.176 0.406  C2  V40 10 
V40 O   O1  O 0 1 N N N 24.056 14.002 36.729 2.677  1.527  -1.062 O   V40 11 
V40 C11 C10 C 0 1 N N S 24.620 14.786 35.772 2.853  0.124  -0.855 C11 V40 12 
V40 C10 C11 C 0 1 N N N 23.550 15.456 34.948 4.050  -0.122 0.082  C10 V40 13 
V40 C   C12 C 0 1 N N N 29.089 15.933 39.354 -1.805 1.858  0.599  C   V40 14 
V40 N   N2  N 0 1 N N N 30.242 15.822 38.349 -2.930 2.757  0.310  N   V40 15 
V40 H2  H2  H 0 1 N N N 25.349 16.976 38.179 0.555  1.339  -0.025 H2  V40 16 
V40 H3  H3  H 0 1 N N N 24.627 15.331 38.220 0.365  0.475  -1.571 H3  V40 17 
V40 H4  H4  H 0 1 N N N 25.496 17.417 34.937 1.812  0.572  1.675  H4  V40 18 
V40 H5  H5  H 0 1 N N N 25.016 17.951 36.583 1.341  -1.153 1.791  H5  V40 19 
V40 H6  H6  H 0 1 N N N 23.072 17.538 34.789 3.917  -0.459 2.236  H6  V40 20 
V40 H7  H7  H 0 1 N N N 22.858 16.840 36.430 3.565  -1.910 1.243  H7  V40 21 
V40 H8  H8  H 0 1 N N N 28.023 17.032 37.856 -2.141 0.732  -1.207 H8  V40 22 
V40 H9  H9  H 0 1 N N N 25.294 14.536 39.703 -1.112 -1.479 -1.748 H9  V40 23 
V40 H10 H10 H 0 1 N N N 26.814 13.590 39.554 -0.100 -2.309 -0.542 H10 V40 24 
V40 H11 H11 H 0 1 N N N 27.206 14.698 37.683 -0.640 -0.551 1.121  H11 V40 25 
V40 H12 H12 H 0 1 N N N 26.201 14.819 41.780 -2.357 -3.330 -0.665 H12 V40 26 
V40 H13 H13 H 0 1 N N N 27.892 14.782 41.176 -2.078 -2.585 0.928  H13 V40 27 
V40 H14 H14 H 0 1 N N N 27.785 16.963 41.763 -3.579 -1.301 -1.400 H14 V40 28 
V40 H15 H15 H 0 1 N N N 26.006 17.061 41.529 -4.326 -2.005 0.054  H15 V40 29 
V40 H16 H16 H 0 1 N N N 27.829 18.271 39.919 -3.108 -0.373 1.469  H16 V40 30 
V40 H17 H17 H 0 1 N N N 26.194 17.755 39.382 -4.119 0.457  0.263  H17 V40 31 
V40 H18 H18 H 0 1 N N N 24.739 13.586 37.241 3.427  1.959  -1.494 H18 V40 32 
V40 H19 H19 H 0 1 N N N 25.269 14.197 35.107 3.018  -0.374 -1.811 H19 V40 33 
V40 H20 H20 H 0 1 N N N 22.588 14.934 35.054 4.506  0.826  0.370  H20 V40 34 
V40 H21 H21 H 0 1 N N N 23.835 15.489 33.886 4.785  -0.765 -0.403 H21 V40 35 
V40 H22 H22 H 0 1 N N N 28.894 14.931 39.765 -1.758 1.669  1.672  H22 V40 36 
V40 H23 H23 H 0 1 N N N 29.404 16.607 40.164 -0.875 2.322  0.271  H23 V40 37 
V40 H24 H24 H 0 1 N N N 31.054 15.465 38.811 -2.821 3.638  0.789  H24 V40 38 
V40 H25 H25 H 0 1 N N N 29.980 15.203 37.609 -3.035 2.896  -0.684 H25 V40 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V40 C10 C9  SING N N 1  
V40 C10 C11 SING N N 2  
V40 C9  C8  SING N N 3  
V40 C11 N1  SING N N 4  
V40 C11 O   SING N N 5  
V40 C8  N1  SING N N 6  
V40 N1  C7  SING N N 7  
V40 C7  C6  SING N N 8  
V40 N   C   SING N N 9  
V40 C6  C1  SING N N 10 
V40 C6  C5  SING N N 11 
V40 C1  C   SING N N 12 
V40 C1  C2  SING N N 13 
V40 C5  C4  SING N N 14 
V40 C2  C3  SING N N 15 
V40 C4  C3  SING N N 16 
V40 C7  H2  SING N N 17 
V40 C7  H3  SING N N 18 
V40 C8  H4  SING N N 19 
V40 C8  H5  SING N N 20 
V40 C9  H6  SING N N 21 
V40 C9  H7  SING N N 22 
V40 C1  H8  SING N N 23 
V40 C5  H9  SING N N 24 
V40 C5  H10 SING N N 25 
V40 C6  H11 SING N N 26 
V40 C4  H12 SING N N 27 
V40 C4  H13 SING N N 28 
V40 C3  H14 SING N N 29 
V40 C3  H15 SING N N 30 
V40 C2  H16 SING N N 31 
V40 C2  H17 SING N N 32 
V40 O   H18 SING N N 33 
V40 C11 H19 SING N N 34 
V40 C10 H20 SING N N 35 
V40 C10 H21 SING N N 36 
V40 C   H22 SING N N 37 
V40 C   H23 SING N N 38 
V40 N   H24 SING N N 39 
V40 N   H25 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V40 SMILES           ACDLabs              12.01 NCC1CCCCC1CN1CCCC1O                                                                                    
V40 InChI            InChI                1.06  "InChI=1S/C12H24N2O/c13-8-10-4-1-2-5-11(10)9-14-7-3-6-12(14)15/h10-12,15H,1-9,13H2/t10-,11-,12-/m0/s1" 
V40 InChIKey         InChI                1.06  ITLMVPHXKPDLDM-SRVKXCTJSA-N                                                                            
V40 SMILES_CANONICAL CACTVS               3.385 "NC[C@@H]1CCCC[C@H]1CN2CCC[C@@H]2O"                                                                    
V40 SMILES           CACTVS               3.385 "NC[CH]1CCCC[CH]1CN2CCC[CH]2O"                                                                         
V40 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CC[C@H]([C@@H](C1)CN)CN2CCC[C@@H]2O"                                                                
V40 SMILES           "OpenEye OEToolkits" 2.0.7 "C1CCC(C(C1)CN)CN2CCCC2O"                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
V40 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-1-{[(1R,2R)-2-(aminomethyl)cyclohexyl]methyl}pyrrolidin-2-ol"          
V40 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-1-[[(1~{R},2~{R})-2-(aminomethyl)cyclohexyl]methyl]pyrrolidin-2-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V40 "Create component" 2022-08-29 RCSB 
V40 "Initial release"  2022-11-02 RCSB 
# 
