data_491
#

_chem_comp.id                                   491
_chem_comp.name                                 "2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-alpha-D-glucopyranose"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H20 N O11 P"
_chem_comp.mon_nstd_parent_comp_id              NDG
_chem_comp.pdbx_synonyms                        
;2-(acetylamino)-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-alpha-D-glucopyranose;
N-acetyl-3-O-[(1R)-1-carboxyethyl]-1-O-phosphono-alpha-D-glucosamine;
2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-alpha-D-glucose;
2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-D-glucose;
2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-02-16
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       373.250
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    491
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4Y7U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  491  "2-(acetylamino)-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-alpha-D-glucopyranose"  PDB  ?  
2  491  "N-acetyl-3-O-[(1R)-1-carboxyethyl]-1-O-phosphono-alpha-D-glucosamine"                   PDB  ?  
3  491  "2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-alpha-D-glucose"            PDB  ?  
4  491  "2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-D-glucose"                  PDB  ?  
5  491  "2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-glucose"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
491  C01  C01  C  0  1  N  N  N  -20.573  -36.854  17.515  -3.178   1.481  -2.072  C01  491   1  
491  C02  C02  C  0  1  N  N  R  -19.471  -37.173  16.527  -2.988   0.470  -0.940  C02  491   2  
491  C03  C03  C  0  1  N  N  N  -18.254  -36.435  16.906  -4.335   0.022  -0.435  C03  491   3  
491  O04  O04  O  0  1  N  N  N  -17.204  -37.061  17.163  -5.157  -0.671  -1.239  O04  491   4  
491  O05  O05  O  0  1  N  N  N  -18.271  -35.179  16.974  -4.677   0.287   0.693  O05  491   5  
491  O3   O06  O  0  1  N  N  N  -19.875  -36.793  15.203  -2.259   1.081   0.127  O3   491   6  
491  C3   C07  C  0  1  N  N  R  -19.272  -37.612  14.130  -0.840   0.963   0.004  C3   491   7  
491  C2   C08  C  0  1  N  N  R  -18.834  -36.754  13.031  -0.342  -0.176   0.900  C2   491   8  
491  C1   C09  C  0  1  N  N  R  -18.088  -37.564  12.004   1.185  -0.244   0.823  C1   491   9  
491  O5   O10  O  0  1  N  N  N  -18.955  -38.672  11.486   1.737   1.014   1.215  O5   491  10  
491  C5   C11  C  0  1  N  N  R  -19.596  -39.464  12.529   1.344   2.108   0.384  C5   491  11  
491  C4   C12  C  0  1  N  N  S  -20.240  -38.629  13.612  -0.177   2.272   0.442  C4   491  12  
491  O4   O13  O  0  1  N  N  N  -20.671  -39.472  14.664  -0.577   3.329  -0.433  O4   491  13  
491  C6   C14  C  0  1  N  N  N  -20.632  -40.325  11.872   2.015   3.391   0.879  C6   491  14  
491  O6   O15  O  0  1  N  N  N  -19.963  -41.156  10.952   3.430   3.282   0.716  O6   491  15  
491  O1   O16  O  0  1  N  N  N  -16.967  -38.075  12.562   1.582  -0.542  -0.517  O1   491  16  
491  P17  P17  P  0  1  N  N  N  -16.028  -39.035  11.765   2.925  -1.354  -0.875  P17  491  17  
491  O18  O18  O  0  1  N  N  N  -14.699  -39.112  12.486   2.808  -2.858  -0.313  O18  491  18  
491  O19  O19  O  0  1  N  N  N  -16.633  -40.416  11.704   3.121  -1.391  -2.472  O19  491  19  
491  O20  O20  O  0  1  N  N  N  -15.798  -38.526  10.365   4.088  -0.684  -0.250  O20  491  20  
491  N2   N21  N  0  1  N  N  N  -18.001  -35.652  13.576  -0.913  -1.445   0.442  N2   491  21  
491  C7   C22  C  0  1  N  N  N  -17.535  -34.565  12.727  -1.083  -2.460   1.311  C7   491  22  
491  O7   O23  O  0  1  N  N  N  -17.811  -34.546  11.543  -0.763  -2.324   2.473  O7   491  23  
491  C8   C24  C  0  1  N  N  N  -16.673  -33.423  13.343  -1.670  -3.766   0.840  C8   491  24  
491  H1A  H1   H  0  1  N  N  N  -20.256  -37.148  18.526  -3.802   2.304  -1.724  H1A  491  25  
491  H2A  H2   H  0  1  N  N  N  -20.781  -35.774  17.496  -2.207   1.867  -2.382  H2A  491  26  
491  H3A  H3   H  0  1  N  N  N  -21.483  -37.408  17.241  -3.661   0.992  -2.918  H3A  491  27  
491  H4A  H4   H  0  1  N  N  N  -19.267  -38.253  16.560  -2.434  -0.392  -1.311  H4A  491  28  
491  H5A  H5   H  0  1  N  N  N  -16.516  -36.447  17.391  -6.010  -0.937  -0.871  H5A  491  29  
491  H3   H6   H  0  1  N  N  N  -18.398  -38.140  14.539  -0.581   0.751  -1.033  H3   491  30  
491  H2   H7   H  0  1  N  N  N  -19.720  -36.316  12.548  -0.648   0.010   1.930  H2   491  31  
491  H1   H8   H  0  1  N  N  N  -17.831  -36.903  11.163   1.548  -1.025   1.491  H1   491  32  
491  H5   H9   H  0  1  N  N  N  -18.844  -40.117  12.996   1.649   1.912  -0.644  H5   491  33  
491  H4   H10  H  0  1  N  N  N  -21.104  -38.104  13.179  -0.480   2.508   1.462  H4   491  34  
491  HO4  H11  H  0  1  N  Y  N  -21.076  -38.948  15.345  -0.189   4.188  -0.215  HO4  491  35  
491  H61  H12  H  0  1  N  N  N  -21.366  -39.696  11.347   1.646   4.240   0.303  H61  491  36  
491  H62  H13  H  0  1  N  N  N  -21.147  -40.937  12.627   1.781   3.540   1.934  H62  491  37  
491  HO6  H14  H  0  1  N  Y  N  -20.593  -41.718  10.516   3.921   4.062   1.010  HO6  491  38  
491  H15  H15  H  0  1  N  N  N  -14.005  -38.824  11.904   2.066  -3.359  -0.680  H15  491  39  
491  H16  H16  H  0  1  N  N  N  -16.742  -40.675  10.796   3.913  -1.865  -2.760  H16  491  40  
491  HN2  H17  H  0  1  N  N  N  -17.755  -35.657  14.545  -1.169  -1.554  -0.488  HN2  491  41  
491  H81  H18  H  0  1  N  N  N  -16.411  -32.697  12.559  -1.893  -3.700  -0.225  H81  491  42  
491  H82  H19  H  0  1  N  N  N  -17.246  -32.917  14.134  -0.954  -4.569   1.013  H82  491  43  
491  H83  H20  H  0  1  N  N  N  -15.753  -33.848  13.771  -2.588  -3.972   1.392  H83  491  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
491  O20  P17  DOUB  N  N   1  
491  O6   C6   SING  N  N   2  
491  O5   C1   SING  N  N   3  
491  O5   C5   SING  N  N   4  
491  O7   C7   DOUB  N  N   5  
491  O19  P17  SING  N  N   6  
491  P17  O18  SING  N  N   7  
491  P17  O1   SING  N  N   8  
491  C6   C5   SING  N  N   9  
491  C1   O1   SING  N  N  10  
491  C1   C2   SING  N  N  11  
491  C5   C4   SING  N  N  12  
491  C7   C8   SING  N  N  13  
491  C7   N2   SING  N  N  14  
491  C2   N2   SING  N  N  15  
491  C2   C3   SING  N  N  16  
491  C4   C3   SING  N  N  17  
491  C4   O4   SING  N  N  18  
491  C3   O3   SING  N  N  19  
491  O3   C02  SING  N  N  20  
491  C02  C03  SING  N  N  21  
491  C02  C01  SING  N  N  22  
491  C03  O05  DOUB  N  N  23  
491  C03  O04  SING  N  N  24  
491  C01  H1A  SING  N  N  25  
491  C01  H2A  SING  N  N  26  
491  C01  H3A  SING  N  N  27  
491  C02  H4A  SING  N  N  28  
491  O04  H5A  SING  N  N  29  
491  C3   H3   SING  N  N  30  
491  C2   H2   SING  N  N  31  
491  C1   H1   SING  N  N  32  
491  C5   H5   SING  N  N  33  
491  C4   H4   SING  N  N  34  
491  O4   HO4  SING  N  N  35  
491  C6   H61  SING  N  N  36  
491  C6   H62  SING  N  N  37  
491  O6   HO6  SING  N  N  38  
491  O18  H15  SING  N  N  39  
491  O19  H16  SING  N  N  40  
491  N2   HN2  SING  N  N  41  
491  C8   H81  SING  N  N  42  
491  C8   H82  SING  N  N  43  
491  C8   H83  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
491  SMILES            ACDLabs               12.01  "O=C(O)C(OC1C(O)C(OC(OP(=O)(O)O)C1NC(=O)C)CO)C"  
491  InChI             InChI                 1.03   "InChI=1S/C11H20NO11P/c1-4(10(16)17)21-9-7(12-5(2)14)11(23-24(18,19)20)22-6(3-13)8(9)15/h4,6-9,11,13,15H,3H2,1-2H3,(H,12,14)(H,16,17)(H2,18,19,20)/t4-,6-,7-,8-,9-,11-/m1/s1"  
491  InChIKey          InChI                 1.03   DTSXRQWOCZUNPL-YVNCZSHWSA-N  
491  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O[C@H]1[C@H](O)[C@@H](CO)O[C@H](O[P](O)(O)=O)[C@@H]1NC(C)=O)C(O)=O"  
491  SMILES            CACTVS                3.385  "C[CH](O[CH]1[CH](O)[CH](CO)O[CH](O[P](O)(O)=O)[CH]1NC(C)=O)C(O)=O"  
491  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "C[C@H](C(=O)O)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O)CO)OP(=O)(O)O)NC(=O)C"  
491  SMILES            "OpenEye OEToolkits"  1.9.2  "CC(C(=O)O)OC1C(C(OC(C1O)CO)OP(=O)(O)O)NC(=O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
491  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(acetylamino)-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-alpha-D-glucopyranose"  
491  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(2R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-2-(hydroxymethyl)-3-oxidanyl-6-phosphonooxy-oxan-4-yl]oxypropanoic acid"  
#
_pdbx_chem_comp_related.comp_id            491
_pdbx_chem_comp_related.related_comp_id    NDG
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  491  C3   NDG  C3   "Carbohydrate core"  
 2  491  C2   NDG  C2   "Carbohydrate core"  
 3  491  C1   NDG  C1   "Carbohydrate core"  
 4  491  C5   NDG  C5   "Carbohydrate core"  
 5  491  C4   NDG  C4   "Carbohydrate core"  
 6  491  C6   NDG  C6   "Carbohydrate core"  
 7  491  C7   NDG  C7   "Carbohydrate core"  
 8  491  C8   NDG  C8   "Carbohydrate core"  
 9  491  N2   NDG  N2   "Carbohydrate core"  
10  491  O3   NDG  O3   "Carbohydrate core"  
11  491  O5   NDG  O5   "Carbohydrate core"  
12  491  O4   NDG  O4   "Carbohydrate core"  
13  491  O6   NDG  O6   "Carbohydrate core"  
14  491  O1   NDG  O1   "Carbohydrate core"  
15  491  O7   NDG  O7   "Carbohydrate core"  
16  491  H4   NDG  H4   "Carbohydrate core"  
17  491  HO4  NDG  HO4  "Carbohydrate core"  
18  491  H61  NDG  H61  "Carbohydrate core"  
19  491  H62  NDG  H62  "Carbohydrate core"  
20  491  HO6  NDG  HO6  "Carbohydrate core"  
21  491  HN2  NDG  HN2  "Carbohydrate core"  
22  491  H81  NDG  H81  "Carbohydrate core"  
23  491  H82  NDG  H82  "Carbohydrate core"  
24  491  H83  NDG  H83  "Carbohydrate core"  
25  491  H3   NDG  H3   "Carbohydrate core"  
26  491  H2   NDG  H2   "Carbohydrate core"  
27  491  H1   NDG  H1   "Carbohydrate core"  
28  491  H5   NDG  H5   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
491  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
491  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
491  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
491  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
491  "Create component"          2015-02-16  EBI   
491  "Initial release"           2015-03-18  RCSB  
491  "Other modification"        2020-07-03  RCSB  
491  "Modify parent residue"     2020-07-17  RCSB  
491  "Modify name"               2020-07-17  RCSB  
491  "Modify synonyms"           2020-07-17  RCSB  
491  "Modify internal type"      2020-07-17  RCSB  
491  "Modify linking type"       2020-07-17  RCSB  
491  "Modify atom id"            2020-07-17  RCSB  
491  "Modify component atom id"  2020-07-17  RCSB  
491  "Modify leaving atom flag"  2020-07-17  RCSB  
##
