data_CV1
#

_chem_comp.id                                   CV1
_chem_comp.name                                 
;(2R,3R,4S,5R,13R,14S,15R,16R)-24-amino-18-bromo-3,4,14,15-tetrahydroxy-7,9,11,25,26-pentaoxa-17,19,22-triaza-1-azonia-8
,10-diphosphapentacyclo[18.3.1.1^2,5^.1^13,16^.0^17,21^]hexacosa-1(24),18,20,22-tetraene-8,10-diolate 8,10-dioxide
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H21 Br N5 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        8-BROMO-CYCLIC-ADP-RIBOSE
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2011-09-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       621.204
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CV1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3ZWY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CV1  N1      N1      N   1  1  Y  N  N  21.685  37.373   2.233  -1.640   2.408  -0.145  N1      CV1   1  
CV1  BR1     BR1     BR  0  0  N  N  N  26.299  33.132   1.118   4.690   2.244   0.324  BR1     CV1   2  
CV1  C2      C2      C   0  1  Y  N  N  21.121  36.284   2.922  -1.424   1.481  -1.065  C2      CV1   3  
CV1  N3      N3      N   0  1  Y  N  N  21.739  35.118   2.980  -0.214   1.022  -1.324  N3      CV1   4  
CV1  C4      C4      C   0  1  Y  N  N  22.931  34.906   2.387   0.853   1.490  -0.697  C4      CV1   5  
CV1  C5      C5      C   0  1  Y  N  N  23.554  35.933   1.692   0.693   2.605   0.147  C5      CV1   6  
CV1  C6      C6      C   0  1  Y  N  N  22.936  37.173   1.611  -0.614   3.056   0.411  C6      CV1   7  
CV1  N6      N6      N   0  1  N  N  N  23.546  38.137   0.938  -0.831   4.151   1.230  N6      CV1   8  
CV1  N7      N7      N   0  1  Y  N  N  24.701  35.470   1.209   1.941   2.987   0.507  N7      CV1   9  
CV1  C8      C8      C   0  1  Y  N  N  24.797  34.202   1.587   2.818   2.115   0.089  C8      CV1  10  
CV1  N9      N9      N   0  1  Y  N  N  23.726  33.837   2.315   2.170   1.097  -0.543  N9      CV1  11  
CV1  PA      PA      P   0  1  N  N  N  17.216  32.973   2.843  -0.427  -3.720   0.421  PA      CV1  12  
CV1  PB      PB      P   0  1  N  N  N  16.821  35.558   4.105  -3.073  -2.531  -0.201  PB      CV1  13  
CV1  "C1'"   "C1'"   C   0  1  N  N  R  23.416  32.477   2.912   2.693  -0.213  -0.922  "C1'"   CV1  14  
CV1  O1A     O1A     O   0  1  N  N  N  17.078  33.643   1.536  -0.117  -3.578  -1.019  O1A     CV1  15  
CV1  O1B     O1B     O   0  1  N  N  N  15.616  35.624   3.256  -2.431  -2.044  -1.594  O1B     CV1  16  
CV1  C1D     C1D     C   0  1  N  N  R  20.967  38.691   2.161  -2.992   2.566   0.391  C1D     CV1  17  
CV1  "C2'"   "C2'"   C   0  1  N  N  R  22.899  32.446   4.363   4.070  -0.451  -0.286  "C2'"   CV1  18  
CV1  "O2'"   "O2'"   O   0  1  N  N  N  23.855  31.757   5.202   5.102  -0.313  -1.265  "O2'"   CV1  19  
CV1  O2A     O2A     O   0  1  N  N  N  16.123  32.090   3.310  -0.263  -5.261   0.858  O2A     CV1  20  
CV1  O2B     O2B     O   0  1  N  N  N  16.679  35.805   5.549  -4.161  -3.497  -0.470  O2B     CV1  21  
CV1  C2D     C2D     C   0  1  N  N  R  20.559  39.073   0.715  -4.009   2.790  -0.737  C2D     CV1  22  
CV1  O2D     O2D     O   0  1  N  N  N  20.878  40.446   0.443  -4.309   4.180  -0.880  O2D     CV1  23  
CV1  "C3'"   "C3'"   C   0  1  N  N  S  21.524  31.723   4.312   4.012  -1.901   0.234  "C3'"   CV1  24  
CV1  "O3'"   "O3'"   O   0  1  N  N  N  21.603  30.401   4.873   4.927  -2.725  -0.491  "O3'"   CV1  25  
CV1  O3A     O3A     O   0  1  N  N  N  17.528  34.083   3.991  -1.935  -3.240   0.696  O3A     CV1  26  
CV1  C3D     C3D     C   0  1  N  N  S  19.046  38.846   0.623  -5.248   2.010  -0.239  C3D     CV1  27  
CV1  O3D     O3D     O   0  1  N  N  N  18.384  40.031   0.161  -6.142   2.880   0.459  O3D     CV1  28  
CV1  "C4'"   "C4'"   C   0  1  N  N  R  21.121  31.620   2.822   2.566  -2.363  -0.015  "C4'"   CV1  29  
CV1  "O4'"   "O4'"   O   0  1  N  N  N  22.344  31.898   2.039   1.806  -1.218  -0.410  "O4'"   CV1  30  
CV1  C4D     C4D     C   0  1  N  N  R  18.579  38.518   2.051  -4.660   0.958   0.718  C4D     CV1  31  
CV1  O4D     O4D     O   0  1  N  N  N  19.733  38.690   2.931  -3.345   1.356   1.063  O4D     CV1  32  
CV1  "C5'"   "C5'"   C   0  1  N  N  N  19.914  32.550   2.417   1.999  -2.979   1.262  "C5'"   CV1  33  
CV1  "O5'"   "O5'"   O   0  1  N  N  N  18.605  32.056   2.859   0.583  -2.805   1.282  "O5'"   CV1  34  
CV1  C5D     C5D     C   0  1  N  N  N  17.946  37.094   2.175  -4.663  -0.407   0.029  C5D     CV1  35  
CV1  O5D     O5D     O   0  1  N  N  N  17.977  36.546   3.520  -3.671  -1.260   0.590  O5D     CV1  36  
CV1  H2      H2      H   0  1  N  N  N  20.166  36.403   3.412  -2.263   1.088  -1.619  H2      CV1  37  
CV1  HN6     HN6     H   0  1  N  N  N  24.430  37.962   0.504  -1.736   4.454   1.405  HN6     CV1  38  
CV1  HN6A    HN6A    H   0  0  N  N  N  23.123  39.040   0.864  -0.079   4.615   1.629  HN6A    CV1  39  
CV1  "H1'"   "H1'"   H   0  1  N  N  N  24.367  31.926   2.950   2.764  -0.278  -2.006  "H1'"   CV1  40  
CV1  H1D     H1D     H   0  1  N  N  N  21.691  39.413   2.567  -3.025   3.398   1.092  H1D     CV1  41  
CV1  "H2'"   "H2'"   H   0  1  N  N  N  22.777  33.451   4.793   4.233   0.244   0.538  "H2'"   CV1  42  
CV1  "HO2'"  "HO2'"  H   0  0  N  N  N  23.536  31.738   6.097   5.994  -0.453  -0.918  "HO2'"  CV1  43  
CV1  H2D     H2D     H   0  1  N  N  N  21.102  38.465  -0.024  -3.642   2.376  -1.676  H2D     CV1  44  
CV1  HO2D    HO2D    H   0  0  N  N  N  20.621  40.661  -0.446  -4.947   4.375  -1.580  HO2D    CV1  45  
CV1  "H3'"   "H3'"   H   0  1  N  N  N  20.786  32.289   4.899   4.239  -1.931   1.300  "H3'"   CV1  46  
CV1  "HO3'"  "HO3'"  H   0  0  N  N  N  20.750  29.986   4.828   5.852  -2.455  -0.405  "HO3'"  CV1  47  
CV1  H3D     H3D     H   0  1  N  N  N  18.810  38.038  -0.085  -5.758   1.528  -1.073  H3D     CV1  48  
CV1  HO3D    HO3D    H   0  0  N  N  N  17.449  39.872   0.110  -6.492   3.600  -0.083  HO3D    CV1  49  
CV1  "H4'"   "H4'"   H   0  1  N  N  N  20.736  30.611   2.611   2.529  -3.100  -0.819  "H4'"   CV1  50  
CV1  H4D     H4D     H   0  1  N  N  N  17.768  39.201   2.342  -5.282   0.906   1.617  H4D     CV1  51  
CV1  "H5'"   "H5'"   H   0  1  N  N  N  20.077  33.537   2.875   2.235  -4.043   1.289  "H5'"   CV1  52  
CV1  "H5'A"  "H5'A"  H   0  0  N  N  N  19.896  32.625   1.320   2.438  -2.487   2.130  "H5'A"  CV1  53  
CV1  H5D     H5D     H   0  1  N  N  N  16.894  37.162   1.861  -5.643  -0.868   0.151  H5D     CV1  54  
CV1  H5DA    H5DA    H   0  0  N  N  N  18.509  36.414   1.519  -4.461  -0.272  -1.034  H5DA    CV1  55  
CV1  H2A     H2A     H   0  1  N  N  N  15.430  32.072   2.660  -0.844  -5.869   0.381  H2A     CV1  56  
CV1  H1B     H1B     H   0  1  N  N  N  14.860  35.831   3.793  -2.053  -2.759  -2.125  H1B     CV1  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CV1  N1     C2      DOUB  Y  N   1  
CV1  N1     C6      SING  Y  N   2  
CV1  N1     C1D     SING  N  N   3  
CV1  BR1    C8      SING  N  N   4  
CV1  C2     N3      SING  Y  N   5  
CV1  N3     C4      DOUB  Y  N   6  
CV1  C4     C5      SING  Y  N   7  
CV1  C4     N9      SING  Y  N   8  
CV1  C5     C6      DOUB  Y  N   9  
CV1  C5     N7      SING  Y  N  10  
CV1  C6     N6      SING  N  N  11  
CV1  N7     C8      DOUB  Y  N  12  
CV1  C8     N9      SING  Y  N  13  
CV1  N9     "C1'"   SING  N  N  14  
CV1  PA     O1A     DOUB  N  N  15  
CV1  PA     O2A     SING  N  N  16  
CV1  PA     O3A     SING  N  N  17  
CV1  PA     "O5'"   SING  N  N  18  
CV1  PB     O1B     SING  N  N  19  
CV1  PB     O2B     DOUB  N  N  20  
CV1  PB     O3A     SING  N  N  21  
CV1  PB     O5D     SING  N  N  22  
CV1  "C1'"  "C2'"   SING  N  N  23  
CV1  "C1'"  "O4'"   SING  N  N  24  
CV1  C1D    C2D     SING  N  N  25  
CV1  C1D    O4D     SING  N  N  26  
CV1  "C2'"  "O2'"   SING  N  N  27  
CV1  "C2'"  "C3'"   SING  N  N  28  
CV1  C2D    O2D     SING  N  N  29  
CV1  C2D    C3D     SING  N  N  30  
CV1  "C3'"  "O3'"   SING  N  N  31  
CV1  "C3'"  "C4'"   SING  N  N  32  
CV1  C3D    O3D     SING  N  N  33  
CV1  C3D    C4D     SING  N  N  34  
CV1  "C4'"  "O4'"   SING  N  N  35  
CV1  "C4'"  "C5'"   SING  N  N  36  
CV1  C4D    O4D     SING  N  N  37  
CV1  C4D    C5D     SING  N  N  38  
CV1  "C5'"  "O5'"   SING  N  N  39  
CV1  C5D    O5D     SING  N  N  40  
CV1  C2     H2      SING  N  N  41  
CV1  N6     HN6     SING  N  N  42  
CV1  N6     HN6A    SING  N  N  43  
CV1  "C1'"  "H1'"   SING  N  N  44  
CV1  C1D    H1D     SING  N  N  45  
CV1  "C2'"  "H2'"   SING  N  N  46  
CV1  "O2'"  "HO2'"  SING  N  N  47  
CV1  C2D    H2D     SING  N  N  48  
CV1  O2D    HO2D    SING  N  N  49  
CV1  "C3'"  "H3'"   SING  N  N  50  
CV1  "O3'"  "HO3'"  SING  N  N  51  
CV1  C3D    H3D     SING  N  N  52  
CV1  O3D    HO3D    SING  N  N  53  
CV1  "C4'"  "H4'"   SING  N  N  54  
CV1  C4D    H4D     SING  N  N  55  
CV1  "C5'"  "H5'"   SING  N  N  56  
CV1  "C5'"  "H5'A"  SING  N  N  57  
CV1  C5D    H5D     SING  N  N  58  
CV1  C5D    H5DA    SING  N  N  59  
CV1  O2A    H2A     SING  N  N  60  
CV1  O1B    H1B     SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CV1  InChI             InChI                 1.03   "InChI=1S/C15H20BrN5O13P2/c16-15-19-6-11(17)20-3-18-12(6)21(15)14-10(25)8(23)5(33-14)2-31-36(28,29)34-35(26,27)30-1-4-7(22)9(24)13(20)32-4/h3-5,7-10,13-14,17,22-25H,1-2H2,(H2,26,27,28,29)/p-1/t4-,5-,7-,8-,9-,10-,13-,14-/m1/s1"  
CV1  InChIKey          InChI                 1.03   WDGMEOAIDHHBSJ-AIKIOGRUSA-M  
CV1  SMILES            ACDLabs               12.01  "Brc2nc1c(N)[n+]4cnc1n2C3OC(C(O)C3O)COP(=O)(OP(=O)(O)OCC5OC4C(O)C5O)O"  
CV1  SMILES_CANONICAL  CACTVS                3.370  "Nc1c2nc(Br)n3[C@@H]4O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]5O[C@H]([C@H](O)[C@@H]5O)[n+]1cnc23)[C@@H](O)[C@H]4O"  
CV1  SMILES            CACTVS                3.370  "Nc1c2nc(Br)n3[CH]4O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]5O[CH]([CH](O)[CH]5O)[n+]1cnc23)[CH](O)[CH]4O"  
CV1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "c1nc2c3c([n+]1[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(OP(=O)(OC[C@@H]5[C@H]([C@H]([C@H](n2c(n3)Br)O5)O)O)O)O)O)O)N"  
CV1  SMILES            "OpenEye OEToolkits"  1.7.2  "c1nc2c3c([n+]1C4C(C(C(O4)COP(=O)(OP(=O)(OCC5C(C(C(n2c(n3)Br)O5)O)O)O)O)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          CV1
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(2R,3R,4S,5R,8R,10R,13R,14S,15R,16R)-24-amino-18-bromo-3,4,8,10,14,15-hexahydroxy-7,9,11,25,26-pentaoxa-17,19,22-triaza-1-azonia-8,10-diphosphapentacyclo[18.3.1.1~2,5~.1~13,16~.0~17,21~]hexacosa-1(24),18,20,22-tetraene 8,10-dioxide (non-preferred name)"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CV1  "Create component"  2011-09-07  EBI   
CV1  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CV1
_pdbx_chem_comp_synonyms.name        8-BROMO-CYCLIC-ADP-RIBOSE
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
