data_HD1
# 
_chem_comp.id                                    HD1 
_chem_comp.name                                  "6-(4-methylpiperazin-1-yl)-N-[(1R,3S)-5-oxidanyl-2-adamantyl]-2-propylsulfanyl-pyridine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H36 N4 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-09-20 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        444.633 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HD1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4BB6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HD1 O1   O1   O 0 1 N N N -11.871 45.310 40.488 1.339  -1.621 -0.373 O1   HD1 1  
HD1 C14  C14  C 0 1 N N N -12.742 45.223 41.352 1.146  -0.423 -0.295 C14  HD1 2  
HD1 N4   N4   N 0 1 N N N -12.456 45.262 42.677 2.183  0.434  -0.384 N4   HD1 3  
HD1 C15  C15  C 0 1 N N N -11.099 45.410 43.202 3.542  -0.078 -0.576 C15  HD1 4  
HD1 C20  C20  C 0 1 N N S -10.767 46.865 43.489 4.402  0.994  -1.248 C20  HD1 5  
HD1 C19  C19  C 0 1 N N N -11.689 47.421 44.577 4.446  2.241  -0.362 C19  HD1 6  
HD1 C21  C21  C 0 1 N N N -9.314  46.946 43.973 5.821  0.460  -1.448 C21  HD1 7  
HD1 C22  C22  C 0 1 N N N -9.157  46.124 45.254 6.426  0.099  -0.089 C22  HD1 8  
HD1 C23  C23  C 0 1 N N N -10.084 46.680 46.332 6.471  1.345  0.796  C23  HD1 9  
HD1 C18  C18  C 0 1 N N N -11.542 46.604 45.869 5.051  1.880  0.996  C18  HD1 10 
HD1 C17  C17  C 0 1 N N N -11.886 45.145 45.577 4.192  0.808  1.668  C17  HD1 11 
HD1 O2   O2   O 0 1 N N N -7.811  46.190 45.708 7.752  -0.401 -0.276 O2   HD1 12 
HD1 C24  C24  C 0 1 N N N -9.523  44.669 44.978 5.567  -0.974 0.583  C24  HD1 13 
HD1 C16  C16  C 0 1 N N R -10.962 44.592 44.489 4.147  -0.439 0.783  C16  HD1 14 
HD1 C5   C5   C 0 1 Y N N -14.212 45.053 40.947 -0.219 0.092  -0.109 C5   HD1 15 
HD1 C6   C6   C 0 1 Y N N -14.640 43.826 40.478 -0.454 1.472  -0.017 C6   HD1 16 
HD1 C7   C7   C 0 1 Y N N -15.992 43.629 40.196 -1.740 1.907  0.155  C7   HD1 17 
HD1 C8   C8   C 0 1 Y N N -16.917 44.664 40.412 -2.776 0.977  0.236  C8   HD1 18 
HD1 N2   N2   N 0 1 N N N -18.284 44.466 40.145 -4.076 1.420  0.410  N2   HD1 19 
HD1 C12  C12  C 0 1 N N N -19.052 44.599 41.410 -5.014 0.290  0.469  C12  HD1 20 
HD1 C11  C11  C 0 1 N N N -20.547 44.333 41.153 -6.426 0.816  0.742  C11  HD1 21 
HD1 N3   N3   N 0 1 N N N -20.745 42.955 40.625 -6.808 1.758  -0.319 N3   HD1 22 
HD1 C13  C13  C 0 1 N N N -22.193 42.728 40.358 -8.187 2.228  -0.134 C13  HD1 23 
HD1 C10  C10  C 0 1 N N N -19.984 42.782 39.369 -5.870 2.888  -0.378 C10  HD1 24 
HD1 C9   C9   C 0 1 N N N -18.496 43.113 39.601 -4.458 2.363  -0.650 C9   HD1 25 
HD1 N1   N1   N 0 1 Y N N -16.490 45.851 40.912 -2.537 -0.323 0.147  N1   HD1 26 
HD1 C4   C4   C 0 1 Y N N -15.186 46.066 41.181 -1.310 -0.791 -0.026 C4   HD1 27 
HD1 S1   S1   S 0 1 N N N -14.691 47.634 41.821 -1.043 -2.529 -0.146 S1   HD1 28 
HD1 C3   C3   C 0 1 N N N -15.936 47.934 43.055 -2.746 -3.121 0.023  C3   HD1 29 
HD1 C2   C2   C 0 1 N N N -17.175 48.604 42.467 -2.764 -4.649 -0.053 C2   HD1 30 
HD1 C1   C1   C 0 1 N N N -18.056 49.151 43.565 -4.203 -5.149 0.090  C1   HD1 31 
HD1 H4   H4   H 0 1 N N N -13.211 45.186 43.328 2.029  1.390  -0.322 H4   HD1 32 
HD1 H15  H15  H 0 1 N N N -10.379 45.024 42.466 3.510  -0.966 -1.207 H15  HD1 33 
HD1 H20  H20  H 0 1 N N N -10.882 47.459 42.571 3.971  1.252  -2.216 H20  HD1 34 
HD1 H16  H16  H 0 1 N N N -11.225 43.544 44.285 3.535  -1.203 1.262  H16  HD1 35 
HD1 H191 H191 H 0 0 N N N -11.422 48.469 44.778 5.058  3.005  -0.841 H191 HD1 36 
HD1 H192 H192 H 0 0 N N N -12.732 47.368 44.231 3.435  2.622  -0.220 H192 HD1 37 
HD1 H211 H211 H 0 0 N N N -8.646  46.546 43.196 5.789  -0.429 -2.079 H211 HD1 38 
HD1 H212 H212 H 0 0 N N N -9.053  47.995 44.176 6.433  1.224  -1.927 H212 HD1 39 
HD1 H18  H18  H 0 1 N N N -12.209 47.004 46.647 5.083  2.769  1.627  H18  HD1 40 
HD1 H231 H231 H 0 0 N N N -9.964  46.091 47.253 6.902  1.089  1.764  H231 HD1 41 
HD1 H232 H232 H 0 0 N N N -9.821  47.729 46.531 7.083  2.110  0.317  H232 HD1 42 
HD1 H2   H2   H 0 1 N N N -7.719  45.678 46.503 8.197  -0.650 0.545  H2   HD1 43 
HD1 H241 H241 H 0 0 N N N -8.852  44.262 44.208 5.535  -1.862 -0.048 H241 HD1 44 
HD1 H242 H242 H 0 0 N N N -9.418  44.083 45.903 5.997  -1.231 1.551  H242 HD1 45 
HD1 H171 H171 H 0 0 N N N -11.762 44.552 46.495 4.623  0.551  2.636  H171 HD1 46 
HD1 H172 H172 H 0 0 N N N -12.930 45.079 45.236 3.181  1.189  1.811  H172 HD1 47 
HD1 H6   H6   H 0 1 N N N -13.932 43.024 40.331 0.362  2.176  -0.082 H6   HD1 48 
HD1 H7   H7   H 0 1 N N N -16.329 42.678 39.810 -1.951 2.963  0.230  H7   HD1 49 
HD1 H121 H121 H 0 0 N N N -18.674 43.871 42.143 -5.002 -0.243 -0.481 H121 HD1 50 
HD1 H122 H122 H 0 0 N N N -18.927 45.618 41.806 -4.718 -0.387 1.270  H122 HD1 51 
HD1 H91C H91C H 0 0 N N N -17.966 43.035 38.640 -3.757 3.197  -0.666 H91C HD1 52 
HD1 H92C H92C H 0 0 N N N -18.081 42.381 40.310 -4.440 1.853  -1.614 H92C HD1 53 
HD1 H111 H111 H 0 0 N N N -21.102 44.443 42.096 -7.128 -0.018 0.757  H111 HD1 54 
HD1 H112 H112 H 0 0 N N N -20.924 45.060 40.419 -6.444 1.325  1.705  H112 HD1 55 
HD1 H131 H131 H 0 0 N N N -22.339 41.710 39.968 -8.273 2.732  0.829  H131 HD1 56 
HD1 H132 H132 H 0 0 N N N -22.761 42.848 41.292 -8.444 2.925  -0.932 H132 HD1 57 
HD1 H133 H133 H 0 0 N N N -22.548 43.459 39.617 -8.868 1.378  -0.161 H133 HD1 58 
HD1 H101 H101 H 0 0 N N N -20.076 41.740 39.028 -6.167 3.566  -1.179 H101 HD1 59 
HD1 H102 H102 H 0 0 N N N -20.391 43.456 38.601 -5.882 3.421  0.573  H102 HD1 60 
HD1 H31C H31C H 0 0 N N N -16.231 46.973 43.503 -3.148 -2.800 0.984  H31C HD1 61 
HD1 H32C H32C H 0 0 N N N -15.515 48.587 43.833 -3.355 -2.710 -0.782 H32C HD1 62 
HD1 H21C H21C H 0 0 N N N -16.862 49.429 41.810 -2.362 -4.970 -1.014 H21C HD1 63 
HD1 H22C H22C H 0 0 N N N -17.743 47.865 41.883 -2.155 -5.060 0.752  H22C HD1 64 
HD1 H11C H11C H 0 0 N N N -18.942 49.629 43.121 -4.605 -4.828 1.051  H11C HD1 65 
HD1 H12C H12C H 0 0 N N N -18.374 48.329 44.223 -4.812 -4.738 -0.714 H12C HD1 66 
HD1 H13C H13C H 0 0 N N N -17.494 49.893 44.151 -4.216 -6.238 0.036  H13C HD1 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HD1 O1  C14  DOUB N N 1  
HD1 C14 N4   SING N N 2  
HD1 C14 C5   SING N N 3  
HD1 N4  C15  SING N N 4  
HD1 C15 C20  SING N N 5  
HD1 C15 C16  SING N N 6  
HD1 C20 C19  SING N N 7  
HD1 C20 C21  SING N N 8  
HD1 C19 C18  SING N N 9  
HD1 C21 C22  SING N N 10 
HD1 C22 C23  SING N N 11 
HD1 C22 O2   SING N N 12 
HD1 C22 C24  SING N N 13 
HD1 C23 C18  SING N N 14 
HD1 C18 C17  SING N N 15 
HD1 C17 C16  SING N N 16 
HD1 C24 C16  SING N N 17 
HD1 C5  C6   SING Y N 18 
HD1 C5  C4   DOUB Y N 19 
HD1 C6  C7   DOUB Y N 20 
HD1 C7  C8   SING Y N 21 
HD1 C8  N2   SING N N 22 
HD1 C8  N1   DOUB Y N 23 
HD1 N2  C12  SING N N 24 
HD1 N2  C9   SING N N 25 
HD1 C12 C11  SING N N 26 
HD1 C11 N3   SING N N 27 
HD1 N3  C13  SING N N 28 
HD1 N3  C10  SING N N 29 
HD1 C10 C9   SING N N 30 
HD1 N1  C4   SING Y N 31 
HD1 C4  S1   SING N N 32 
HD1 S1  C3   SING N N 33 
HD1 C3  C2   SING N N 34 
HD1 C2  C1   SING N N 35 
HD1 N4  H4   SING N N 36 
HD1 C15 H15  SING N N 37 
HD1 C20 H20  SING N N 38 
HD1 C16 H16  SING N N 39 
HD1 C19 H191 SING N N 40 
HD1 C19 H192 SING N N 41 
HD1 C21 H211 SING N N 42 
HD1 C21 H212 SING N N 43 
HD1 C18 H18  SING N N 44 
HD1 C23 H231 SING N N 45 
HD1 C23 H232 SING N N 46 
HD1 O2  H2   SING N N 47 
HD1 C24 H241 SING N N 48 
HD1 C24 H242 SING N N 49 
HD1 C17 H171 SING N N 50 
HD1 C17 H172 SING N N 51 
HD1 C6  H6   SING N N 52 
HD1 C7  H7   SING N N 53 
HD1 C12 H121 SING N N 54 
HD1 C12 H122 SING N N 55 
HD1 C9  H91C SING N N 56 
HD1 C9  H92C SING N N 57 
HD1 C11 H111 SING N N 58 
HD1 C11 H112 SING N N 59 
HD1 C13 H131 SING N N 60 
HD1 C13 H132 SING N N 61 
HD1 C13 H133 SING N N 62 
HD1 C10 H101 SING N N 63 
HD1 C10 H102 SING N N 64 
HD1 C3  H31C SING N N 65 
HD1 C3  H32C SING N N 66 
HD1 C2  H21C SING N N 67 
HD1 C2  H22C SING N N 68 
HD1 C1  H11C SING N N 69 
HD1 C1  H12C SING N N 70 
HD1 C1  H13C SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HD1 SMILES           ACDLabs              12.01 "O=C(NC3C2CC1CC3CC(O)(C1)C2)c4ccc(nc4SCCC)N5CCN(C)CC5"                                                                                                                                     
HD1 InChI            InChI                1.03  "InChI=1S/C24H36N4O2S/c1-3-10-31-23-19(4-5-20(25-23)28-8-6-27(2)7-9-28)22(29)26-21-17-11-16-12-18(21)15-24(30,13-16)14-17/h4-5,16-18,21,30H,3,6-15H2,1-2H3,(H,26,29)/t16-,17-,18+,21-,24-" 
HD1 InChIKey         InChI                1.03  HCCPSOBZLRHGQN-OREAVBJWSA-N                                                                                                                                                                
HD1 SMILES_CANONICAL CACTVS               3.385 "CCCSc1nc(ccc1C(=O)NC2[C@H]3CC4C[C@@H]2CC(O)(C4)C3)N5CCN(C)CC5"                                                                                                                            
HD1 SMILES           CACTVS               3.385 "CCCSc1nc(ccc1C(=O)NC2[CH]3CC4C[CH]2CC(O)(C4)C3)N5CCN(C)CC5"                                                                                                                               
HD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCCSc1c(ccc(n1)N2CCN(CC2)C)C(=O)NC3[C@@H]4CC5C[C@H]3CC(C4)(C5)O"                                                                                                                          
HD1 SMILES           "OpenEye OEToolkits" 1.9.2 "CCCSc1c(ccc(n1)N2CCN(CC2)C)C(=O)NC3C4CC5CC3CC(C5)(C4)O"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HD1 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(1R,2s,3S,5s,7s)-5-hydroxytricyclo[3.3.1.1~3,7~]dec-2-yl]-6-(4-methylpiperazin-1-yl)-2-(propylsulfanyl)pyridine-3-carboxamide" 
HD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "6-(4-methylpiperazin-1-yl)-N-[(1R,3S)-5-oxidanyl-2-adamantyl]-2-propylsulfanyl-pyridine-3-carboxamide"                            
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HD1 "Create component"  2012-09-20 EBI  
HD1 "Initial release"   2012-11-23 RCSB 
HD1 "Modify descriptor" 2014-09-05 RCSB 
# 
