data_V71
#

_chem_comp.id                                   V71
_chem_comp.name                                 "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-galactopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H25 F N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-galactoside;
(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-D-galactoside;
(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-galactoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-06-17
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       324.349
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V71
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5BWS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  V71  "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-galactoside"  PDB  ?  
2  V71  "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-D-galactoside"        PDB  ?  
3  V71  "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-galactoside"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V71  C1   C1   C  0  1  N  N  S  -6.588  -0.871  -0.593  -0.953   0.779  -0.628  C1   V71   1  
V71  C10  C10  C  0  1  N  N  R  -4.677   0.078   0.763   1.186  -0.013   0.110  C10  V71   2  
V71  C11  C11  C  0  1  N  N  R  -5.151   1.498   1.307   2.176   1.113  -0.192  C11  V71   3  
V71  C12  C12  C  0  1  N  N  S  -3.851   2.394   1.536   3.527   0.513  -0.585  C12  V71   4  
V71  C2   C2   C  0  1  N  N  R  -8.046  -1.354  -0.231  -2.127   1.650  -0.175  C2   V71   5  
V71  C3   C3   C  0  1  N  N  R  -7.941  -2.761   0.390  -2.922   0.901   0.900  C3   V71   6  
V71  C4   C4   C  0  1  N  N  R  -7.334  -3.759  -0.612  -3.382  -0.446   0.335  C4   V71   7  
V71  C5   C5   C  0  1  N  N  R  -5.887  -3.322  -1.045  -2.159  -1.236  -0.139  C5   V71   8  
V71  C6   C6   C  0  1  N  N  N  -5.291  -4.298  -2.100  -2.614  -2.558  -0.760  C6   V71   9  
V71  C7   C7   C  0  1  N  N  R  -2.922   1.701   2.658   4.061  -0.339   0.568  C7   V71  10  
V71  C8   C8   C  0  1  N  N  N  -2.465   0.271   2.075   3.071  -1.466   0.870  C8   V71  11  
V71  C9   C9   C  0  1  N  N  S  -3.752  -0.635   1.800   1.719  -0.866   1.263  C9   V71  12  
V71  F99  F99  F  0  1  N  N  N  -8.182  -3.851  -1.806  -4.246  -0.230  -0.744  F99  V71  13  
V71  N2   N2   N  0  1  N  N  N  -8.638  -0.352   0.738  -1.618   2.911   0.380  N2   V71  14  
V71  N6   N6   N  0  1  N  N  N  -3.996  -3.961  -2.556  -1.438  -3.367  -1.105  N6   V71  15  
V71  N7   N7   N  0  1  N  N  N  -1.673   2.502   2.897   5.359  -0.916   0.191  N7   V71  16  
V71  N9   N9   N  0  1  N  N  N  -3.326  -1.944   1.264   0.769  -1.947   1.553  N9   V71  17  
V71  O1   O1   O  0  1  N  N  N  -5.800  -0.764   0.551  -0.076   0.547   0.477  O1   V71  18  
V71  O11  O11  O  0  1  N  N  N  -6.009   2.120   0.271   1.677   1.909  -1.269  O11  V71  19  
V71  O12  O12  O  0  1  N  N  N  -4.293   3.634   2.003   4.452   1.565  -0.867  O12  V71  20  
V71  O3   O23  O  0  1  N  N  N  -9.005  -3.112   0.651  -4.062   1.676   1.277  O3   V71  21  
V71  O5   O5   O  0  1  N  N  N  -6.000  -1.881  -1.575  -1.448  -0.471  -1.114  O5   V71  22  
V71  H1   H1   H  0  1  N  N  N  -6.668   0.103  -1.097  -0.408   1.288  -1.423  H1   V71  23  
V71  H2A  H2   H  0  1  N  N  N  -4.117   0.230  -0.171   1.063  -0.637  -0.776  H2A  V71  24  
V71  H3A  H3   H  0  1  N  N  N  -5.692   1.374   2.257   2.299   1.736   0.693  H3A  V71  25  
V71  H4A  H4   H  0  1  N  N  N  -3.288   2.474   0.595   3.404  -0.110  -1.471  H4A  V71  26  
V71  H2   H5   H  0  1  N  N  N  -8.652  -1.397  -1.148  -2.775   1.860  -1.026  H2   V71  27  
V71  H3   H6   H  0  1  N  N  N  -7.263  -2.697   1.254  -2.290   0.736   1.772  H3   V71  28  
V71  H4   H7   H  0  1  N  N  N  -7.267  -4.745  -0.130  -3.901  -1.008   1.110  H4   V71  29  
V71  H5   H8   H  0  1  N  N  N  -5.240  -3.325  -0.155  -1.506  -1.439   0.710  H5   V71  30  
V71  H61  H9   H  0  1  N  N  N  -5.966  -4.316  -2.969  -3.232  -3.101  -0.045  H61  V71  31  
V71  H62  H10  H  0  1  N  N  N  -5.245  -5.301  -1.651  -3.193  -2.355  -1.661  H62  V71  32  
V71  H11  H11  H  0  1  N  N  N  -3.495   1.562   3.586   4.184   0.284   1.454  H11  V71  33  
V71  H12  H12  H  0  1  N  N  N  -1.814  -0.231   2.806   2.948  -2.089  -0.016  H12  V71  34  
V71  H13  H13  H  0  1  N  N  N  -1.914   0.419   1.134   3.451  -2.073   1.692  H13  V71  35  
V71  H14  H14  H  0  1  N  N  N  -4.300  -0.768   2.744   1.842  -0.243   2.149  H14  V71  36  
V71  H15  H15  H  0  1  N  N  N  -9.565  -0.634   0.985  -2.375   3.503   0.687  H15  V71  37  
V71  H16  H16  H  0  1  N  N  N  -8.072  -0.310   1.561  -0.967   2.738   1.132  H16  V71  38  
V71  H18  H18  H  0  1  N  N  N  -3.692  -4.637  -3.227  -1.712  -4.247  -1.517  H18  V71  39  
V71  H19  H19  H  0  1  N  N  N  -4.017  -3.056  -2.981  -0.816  -2.860  -1.716  H19  V71  40  
V71  H21  H21  H  0  1  N  N  N  -1.116   2.052   3.595   5.732  -1.484   0.937  H21  V71  41  
V71  H22  H22  H  0  1  N  N  N  -1.152   2.568   2.046   5.284  -1.446  -0.665  H22  V71  42  
V71  H24  H24  H  0  1  N  N  N  -2.734  -2.400   1.928   1.146  -2.587   2.236  H24  V71  43  
V71  H25  H25  H  0  1  N  N  N  -4.131  -2.511   1.091  -0.119  -1.577   1.856  H25  V71  44  
V71  H27  H27  H  0  1  N  N  N  -6.305   2.971   0.573   2.255   2.644  -1.515  H27  V71  45  
V71  H28  H28  H  0  1  N  N  N  -3.546   4.201   2.153   4.177   2.147  -1.590  H28  V71  46  
V71  HO3  H29  H  0  1  N  Y  N  -9.396  -2.506   1.270  -4.613   1.261   1.956  HO3  V71  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V71  N6   C6   SING  N  N   1  
V71  C6   C5   SING  N  N   2  
V71  F99  C4   SING  N  N   3  
V71  O5   C5   SING  N  N   4  
V71  O5   C1   SING  N  N   5  
V71  C5   C4   SING  N  N   6  
V71  C4   C3   SING  N  N   7  
V71  C1   C2   SING  N  N   8  
V71  C1   O1   SING  N  N   9  
V71  C2   C3   SING  N  N  10  
V71  C2   N2   SING  N  N  11  
V71  O11  C11  SING  N  N  12  
V71  C3   O3   SING  N  N  13  
V71  O1   C10  SING  N  N  14  
V71  C10  C11  SING  N  N  15  
V71  C10  C9   SING  N  N  16  
V71  N9   C9   SING  N  N  17  
V71  C11  C12  SING  N  N  18  
V71  C12  O12  SING  N  N  19  
V71  C12  C7   SING  N  N  20  
V71  C9   C8   SING  N  N  21  
V71  C8   C7   SING  N  N  22  
V71  C7   N7   SING  N  N  23  
V71  C1   H1   SING  N  N  24  
V71  C10  H2A  SING  N  N  25  
V71  C11  H3A  SING  N  N  26  
V71  C12  H4A  SING  N  N  27  
V71  C2   H2   SING  N  N  28  
V71  C3   H3   SING  N  N  29  
V71  C4   H4   SING  N  N  30  
V71  C5   H5   SING  N  N  31  
V71  C6   H61  SING  N  N  32  
V71  C6   H62  SING  N  N  33  
V71  C7   H11  SING  N  N  34  
V71  C8   H12  SING  N  N  35  
V71  C8   H13  SING  N  N  36  
V71  C9   H14  SING  N  N  37  
V71  N2   H15  SING  N  N  38  
V71  N2   H16  SING  N  N  39  
V71  N6   H18  SING  N  N  40  
V71  N6   H19  SING  N  N  41  
V71  N7   H21  SING  N  N  42  
V71  N7   H22  SING  N  N  43  
V71  N9   H24  SING  N  N  44  
V71  N9   H25  SING  N  N  45  
V71  O11  H27  SING  N  N  46  
V71  O12  H28  SING  N  N  47  
V71  O3   HO3  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V71  SMILES            ACDLabs               12.01  "C1(C(C(O)C(C(CN)O1)F)N)OC2C(C(O)C(N)CC2N)O"  
V71  InChI             InChI                 1.03   "InChI=1S/C12H25FN4O5/c13-6-5(2-14)21-12(7(17)9(6)19)22-11-4(16)1-3(15)8(18)10(11)20/h3-12,18-20H,1-2,14-17H2/t3-,4+,5-,6+,7-,8+,9+,10-,11-,12-/m1/s1"  
V71  InChIKey          InChI                 1.03   CRXNRBKQEXVRGM-RMDUJVAESA-N  
V71  SMILES_CANONICAL  CACTVS                3.385  "NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O)[C@H]2O)[C@H](N)[C@@H](O)[C@H]1F"  
V71  SMILES            CACTVS                3.385  "NC[CH]1O[CH](O[CH]2[CH](N)C[CH](N)[CH](O)[CH]2O)[CH](N)[CH](O)[CH]1F"  
V71  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1N)O[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CN)F)O)N)O)O)N"  
V71  SMILES            "OpenEye OEToolkits"  1.9.2  "C1C(C(C(C(C1N)OC2C(C(C(C(O2)CN)F)O)N)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V71  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-galactopyranoside"  
V71  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  
;(1S,2R,3R,4S,6R)-3-[(2S,3R,4R,5R,6R)-6-(aminomethyl)-3-azanyl-5-fluoranyl-4-oxidanyl-oxan-2-yl]oxy-4,6-bis(azanyl)cyclo
hexane-1,2-diol
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
V71  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
V71  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
V71  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
V71  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V71  "Create component"          2015-06-17  PDBJ  
V71  "Initial release"           2016-06-22  RCSB  
V71  "Other modification"        2020-07-03  RCSB  
V71  "Modify synonyms"           2020-07-17  RCSB  
V71  "Modify internal type"      2020-07-17  RCSB  
V71  "Modify linking type"       2020-07-17  RCSB  
V71  "Modify atom id"            2020-07-17  RCSB  
V71  "Modify component atom id"  2020-07-17  RCSB  
V71  "Modify leaving atom flag"  2020-07-17  RCSB  
##
