data_WF1
# 
_chem_comp.id                                    WF1 
_chem_comp.name                                  "17-amino-10-oxo-3,6,12,15-tetraoxa-9-azaheptadecan-1-oic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H24 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-10-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        308.328 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WF1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7KI0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WF1 C14 C1  C 0 1 N N N N N N 95.610 120.198 167.010 2.338  2.780  -0.866 C14 WF1 1  
WF1 C23 C2  C 0 1 N N N N N N 96.507 127.262 162.882 -6.730 -1.271 -0.339 C23 WF1 2  
WF1 O22 O1  O 0 1 N N N N N N 97.168 126.656 163.957 -5.524 -0.771 0.243  O22 WF1 3  
WF1 C12 C3  C 0 1 N N N N N N 95.483 118.471 168.578 4.247  2.038  0.378  C12 WF1 4  
WF1 C15 C4  C 0 1 N N N N N N 95.650 119.791 165.542 0.951  2.340  -1.337 C15 WF1 5  
WF1 C20 C5  C 0 1 N N N N N N 96.099 124.963 165.228 -4.325 0.933  1.467  C20 WF1 6  
WF1 C18 C6  C 0 1 N N N N N N 94.995 123.314 163.966 -2.096 1.560  0.845  C18 WF1 7  
WF1 C08 C7  C 0 1 N N N N N N 97.765 116.801 169.755 5.631  -2.540 -0.087 C08 WF1 8  
WF1 C09 C8  C 0 1 N N N N N N 96.526 115.911 169.728 5.481  -1.437 0.928  C09 WF1 9  
WF1 O10 O2  O 0 1 N N N N N N 95.902 116.134 168.496 4.973  -0.266 0.288  O10 WF1 10 
WF1 C11 C9  C 0 1 N N N N N N 94.869 117.074 168.554 4.793  0.846  1.168  C11 WF1 11 
WF1 O13 O3  O 0 1 N N N N N N 94.787 119.296 167.689 2.941  1.728  -0.111 O13 WF1 12 
WF1 N16 N1  N 0 1 N N N N N N 95.756 120.962 164.692 0.079  2.148  -0.176 N16 WF1 13 
WF1 C17 C10 C 0 1 N N N N N N 94.861 122.092 164.870 -1.199 1.758  -0.350 C17 WF1 14 
WF1 O19 O4  O 0 1 N N N N N N 94.880 124.448 164.775 -3.392 1.149  0.406  O19 WF1 15 
WF1 C21 C11 C 0 1 N N N N N N 96.985 125.269 164.022 -5.670 0.498  0.882  C21 WF1 16 
WF1 C24 C12 C 0 1 N N N N N N 95.302 128.034 163.417 -6.457 -2.628 -0.992 C24 WF1 17 
WF1 N25 N2  N 0 1 N N N N N N 94.276 127.140 163.927 -6.092 -3.604 0.043  N25 WF1 18 
WF1 O26 O5  O 0 1 N N N N N N 94.028 122.067 165.711 -1.628 1.565  -1.468 O26 WF1 19 
WF1 O27 O6  O 0 1 N N N N N N 98.710 116.519 169.101 5.333  -2.343 -1.242 O27 WF1 20 
WF1 H1  H1  H 0 1 N N N N N N 96.625 120.168 167.433 2.960  3.009  -1.732 H1  WF1 21 
WF1 H2  H2  H 0 1 N N N N N N 95.204 121.216 167.104 2.245  3.668  -0.241 H2  WF1 22 
WF1 H3  H3  H 0 1 N N N N N N 96.168 126.491 162.175 -7.487 -1.386 0.436  H3  WF1 23 
WF1 H4  H4  H 0 1 N N N N N N 97.192 127.954 162.370 -7.087 -0.570 -1.094 H4  WF1 24 
WF1 H5  H5  H 0 1 N N N N N N 96.539 118.414 168.276 4.194  2.911  1.029  H5  WF1 25 
WF1 H6  H6  H 0 1 N N N N N N 95.414 118.885 169.595 4.909  2.251  -0.461 H6  WF1 26 
WF1 H7  H7  H 0 1 N N N N N N 94.728 119.245 165.293 0.527  3.106  -1.987 H7  WF1 27 
WF1 H8  H8  H 0 1 N N N N N N 96.520 119.140 165.371 1.034  1.403  -1.888 H8  WF1 28 
WF1 H9  H9  H 0 1 N N N N N N 96.596 124.223 165.873 -3.947 0.154  2.129  H9  WF1 29 
WF1 H10 H10 H 0 1 N N N N N N 95.921 125.886 165.799 -4.454 1.857  2.030  H10 WF1 30 
WF1 H11 H11 H 0 1 N N N N N N 94.197 123.310 163.208 -1.673 0.794  1.495  H11 WF1 31 
WF1 H12 H12 H 0 1 N N N N N N 95.975 123.306 163.467 -2.180 2.497  1.396  H12 WF1 32 
WF1 H14 H14 H 0 1 N N N N N N 95.848 116.179 170.551 4.790  -1.754 1.709  H14 WF1 33 
WF1 H15 H15 H 0 1 N N N N N N 96.816 114.854 169.821 6.453  -1.217 1.371  H15 WF1 34 
WF1 H16 H16 H 0 1 N N N N N N 94.222 116.969 167.671 5.750  1.114  1.615  H16 WF1 35 
WF1 H17 H17 H 0 1 N N N N N N 94.274 116.915 169.465 4.087  0.577  1.953  H17 WF1 36 
WF1 H18 H18 H 0 1 N N N N N N 96.453 120.991 163.976 0.421  2.302  0.719  H18 WF1 37 
WF1 H19 H19 H 0 1 N N N N N N 96.498 124.914 163.102 -6.005 1.236  0.153  H19 WF1 38 
WF1 H20 H20 H 0 1 N N N N N N 97.958 124.770 164.138 -6.406 0.420  1.683  H20 WF1 39 
WF1 H21 H21 H 0 1 N N N N N N 95.635 128.696 164.230 -7.353 -2.967 -1.512 H21 WF1 40 
WF1 H22 H22 H 0 1 N N N N N N 94.876 128.639 162.603 -5.639 -2.530 -1.704 H22 WF1 41 
WF1 H23 H23 H 0 1 N N N N N N 93.505 127.677 164.268 -5.907 -4.509 -0.363 H23 WF1 42 
WF1 H24 H24 H 0 1 N N N N N N 93.964 126.538 163.192 -5.302 -3.281 0.582  H24 WF1 43 
WF1 O1  O7  O 0 1 N Y N N N N 97.785 117.992 170.582 6.096  -3.742 0.290  O1  WF1 44 
WF1 H13 H13 H 0 1 N Y N N N N 98.622 118.431 170.486 6.174  -4.418 -0.397 H13 WF1 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WF1 C23 C24 SING N N 1  
WF1 C23 O22 SING N N 2  
WF1 C24 N25 SING N N 3  
WF1 O22 C21 SING N N 4  
WF1 C18 O19 SING N N 5  
WF1 C18 C17 SING N N 6  
WF1 C21 C20 SING N N 7  
WF1 N16 C17 SING N N 8  
WF1 N16 C15 SING N N 9  
WF1 O19 C20 SING N N 10 
WF1 C17 O26 DOUB N N 11 
WF1 C15 C14 SING N N 12 
WF1 C14 O13 SING N N 13 
WF1 O13 C12 SING N N 14 
WF1 O10 C11 SING N N 15 
WF1 O10 C09 SING N N 16 
WF1 C11 C12 SING N N 17 
WF1 O27 C08 DOUB N N 18 
WF1 C09 C08 SING N N 19 
WF1 C14 H1  SING N N 20 
WF1 C14 H2  SING N N 21 
WF1 C23 H3  SING N N 22 
WF1 C23 H4  SING N N 23 
WF1 C12 H5  SING N N 24 
WF1 C12 H6  SING N N 25 
WF1 C15 H7  SING N N 26 
WF1 C15 H8  SING N N 27 
WF1 C20 H9  SING N N 28 
WF1 C20 H10 SING N N 29 
WF1 C18 H11 SING N N 30 
WF1 C18 H12 SING N N 31 
WF1 C09 H14 SING N N 32 
WF1 C09 H15 SING N N 33 
WF1 C11 H16 SING N N 34 
WF1 C11 H17 SING N N 35 
WF1 N16 H18 SING N N 36 
WF1 C21 H19 SING N N 37 
WF1 C21 H20 SING N N 38 
WF1 C24 H21 SING N N 39 
WF1 C24 H22 SING N N 40 
WF1 N25 H23 SING N N 41 
WF1 N25 H24 SING N N 42 
WF1 C08 O1  SING N N 43 
WF1 O1  H13 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WF1 SMILES           ACDLabs              12.01 "C(OCCOCC(O)=O)CNC(COCCOCCN)=O"                                                                            
WF1 InChI            InChI                1.03  "InChI=1S/C12H24N2O7/c13-1-3-18-5-7-20-9-11(15)14-2-4-19-6-8-21-10-12(16)17/h1-10,13H2,(H,14,15)(H,16,17)" 
WF1 InChIKey         InChI                1.03  YQZVQKYXWPIKIX-UHFFFAOYSA-N                                                                                
WF1 SMILES_CANONICAL CACTVS               3.385 "NCCOCCOCC(=O)NCCOCCOCC(O)=O"                                                                              
WF1 SMILES           CACTVS               3.385 "NCCOCCOCC(=O)NCCOCCOCC(O)=O"                                                                              
WF1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(COCCOCC(=O)NCCOCCOCC(=O)O)N"                                                                            
WF1 SMILES           "OpenEye OEToolkits" 2.0.7 "C(COCCOCC(=O)NCCOCCOCC(=O)O)N"                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WF1 "SYSTEMATIC NAME" ACDLabs              12.01 "17-amino-10-oxo-3,6,12,15-tetraoxa-9-azaheptadecan-1-oic acid"                  
WF1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[2-[2-[2-[2-(2-azanylethoxy)ethoxy]ethanoylamino]ethoxy]ethoxy]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WF1 "Create component" 2020-10-23 RCSB 
WF1 "Initial release"  2021-08-04 RCSB 
WF1 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WF1 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C08 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
