data_Y41
#

_chem_comp.id                                   Y41
_chem_comp.name                                 "3-amino-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H20 N2 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-04
_chem_comp.pdbx_modified_date                   2020-08-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       304.386
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y41
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JN2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y41  O7   O1   O  0  1  N  N  N  50.625  30.595  -1.220   1.452  -1.776  -0.326  O7   Y41   1  
Y41  C1   C1   C  0  1  N  N  N  50.931  31.185  -0.185   1.509  -0.562  -0.328  C1   Y41   2  
Y41  C3   C2   C  0  1  Y  N  N  50.486  32.599  -0.013   2.801   0.118  -0.090  C3   Y41   3  
Y41  C10  C3   C  0  1  Y  N  N  49.113  32.823   0.260   2.898   1.504  -0.222  C10  Y41   4  
Y41  C17  C4   C  0  1  Y  N  N  48.640  34.133   0.436   4.104   2.136   0.001  C17  Y41   5  
Y41  C21  C5   C  0  1  Y  N  N  49.525  35.218   0.301   5.220   1.400   0.354  C21  Y41   6  
Y41  C19  C6   C  0  1  Y  N  N  50.891  34.991   0.004   5.134   0.020   0.488  C19  Y41   7  
Y41  N01  N1   N  0  1  N  N  N  51.722  36.058  -0.105   6.265  -0.719   0.847  N01  Y41   8  
Y41  C13  C7   C  0  1  Y  N  N  51.380  33.671  -0.127   3.925  -0.624   0.272  C13  Y41   9  
Y41  C23  C8   C  0  1  N  N  N  52.833  33.446  -0.406   3.827  -2.120   0.423  C23  Y41  10  
Y41  N2   N2   N  0  1  N  N  N  51.608  30.592   0.790   0.397   0.166  -0.553  N2   Y41  11  
Y41  C6   C9   C  0  1  N  N  R  51.898  29.187   0.734  -0.882  -0.508  -0.795  C6   Y41  12  
Y41  C01  C10  C  0  1  N  N  N  52.100  28.649   2.167  -1.018  -0.822  -2.286  C01  Y41  13  
Y41  C5   C11  C  0  1  Y  N  N  53.139  28.957  -0.098  -2.012   0.392  -0.366  C5   Y41  14  
Y41  C8   C12  C  0  1  Y  N  N  53.128  28.101  -1.308  -3.236  -0.161   0.047  C8   Y41  15  
Y41  C14  C13  C  0  1  Y  N  N  51.996  27.476  -1.839  -3.440  -1.551   0.066  C14  Y41  16  
Y41  C20  C14  C  0  1  Y  N  N  52.127  26.685  -2.998  -4.639  -2.050   0.472  C20  Y41  17  
Y41  C22  C15  C  0  1  Y  N  N  53.337  26.527  -3.685  -5.671  -1.203   0.872  C22  Y41  18  
Y41  C18  C16  C  0  1  Y  N  N  54.465  27.185  -3.191  -5.510   0.149   0.867  C18  Y41  19  
Y41  C11  C17  C  0  1  Y  N  N  54.403  27.966  -2.022  -4.286   0.701   0.453  C11  Y41  20  
Y41  C12  C18  C  0  1  Y  N  N  55.538  28.592  -1.522  -4.081   2.091   0.435  C12  Y41  21  
Y41  C9   C19  C  0  1  Y  N  N  55.519  29.364  -0.385  -2.882   2.591   0.029  C9   Y41  22  
Y41  C4   C20  C  0  1  Y  N  N  54.326  29.567   0.308  -1.850   1.743  -0.370  C4   Y41  23  
Y41  H1   H1   H  0  1  N  N  N  48.432  31.988   0.332   2.029   2.082  -0.499  H1   Y41  24  
Y41  H2   H2   H  0  1  N  N  N  47.601  34.307   0.674   4.177   3.208  -0.102  H2   Y41  25  
Y41  H3   H3   H  0  1  N  N  N  49.162  36.228   0.424   6.162   1.900   0.527  H3   Y41  26  
Y41  H4   H4   H  0  1  N  N  N  51.199  36.902   0.016   7.109  -0.269   1.002  H4   Y41  27  
Y41  H5   H5   H  0  1  N  N  N  52.431  36.002   0.598   6.205  -1.683   0.940  H5   Y41  28  
Y41  H6   H6   H  0  1  N  N  N  53.000  33.430  -1.493   3.934  -2.591  -0.554  H6   Y41  29  
Y41  H7   H7   H  0  1  N  N  N  53.423  34.259   0.043   4.619  -2.471   1.084  H7   Y41  30  
Y41  H8   H8   H  0  1  N  N  N  53.145  32.484   0.027   2.858  -2.380   0.848  H8   Y41  31  
Y41  H9   H9   H  0  1  N  N  N  51.920  31.130   1.573   0.443   1.134  -0.555  H9   Y41  32  
Y41  H10  H10  H  0  1  N  N  N  51.056  28.648   0.275  -0.918  -1.435  -0.224  H10  Y41  33  
Y41  H11  H11  H  0  1  N  N  N  51.188  28.825   2.757  -0.201  -1.472  -2.597  H11  Y41  34  
Y41  H12  H12  H  0  1  N  N  N  52.309  27.570   2.127  -1.970  -1.322  -2.466  H12  Y41  35  
Y41  H13  H13  H  0  1  N  N  N  52.947  29.169   2.638  -0.982   0.106  -2.858  H13  Y41  36  
Y41  H14  H14  H  0  1  N  N  N  51.032  27.598  -1.367  -2.650  -2.220  -0.241  H14  Y41  37  
Y41  H15  H15  H  0  1  N  N  N  51.252  26.176  -3.375  -4.794  -3.119   0.485  H15  Y41  38  
Y41  H16  H16  H  0  1  N  N  N  53.396  25.914  -4.572  -6.613  -1.625   1.189  H16  Y41  39  
Y41  H17  H17  H  0  1  N  N  N  55.404  27.093  -3.717  -6.319   0.793   1.179  H17  Y41  40  
Y41  H18  H18  H  0  1  N  N  N  56.473  28.467  -2.048  -4.872   2.760   0.742  H18  Y41  41  
Y41  H19  H19  H  0  1  N  N  N  56.432  29.816  -0.027  -2.728   3.659   0.016  H19  Y41  42  
Y41  H20  H20  H  0  1  N  N  N  54.321  30.209   1.176  -0.907   2.165  -0.683  H20  Y41  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y41  C22  C18  DOUB  Y  N   1  
Y41  C22  C20  SING  Y  N   2  
Y41  C18  C11  SING  Y  N   3  
Y41  C20  C14  DOUB  Y  N   4  
Y41  C11  C12  DOUB  Y  N   5  
Y41  C11  C8   SING  Y  N   6  
Y41  C14  C8   SING  Y  N   7  
Y41  C12  C9   SING  Y  N   8  
Y41  C8   C5   DOUB  Y  N   9  
Y41  O7   C1   DOUB  N  N  10  
Y41  C23  C13  SING  N  N  11  
Y41  C9   C4   DOUB  Y  N  12  
Y41  C1   C3   SING  N  N  13  
Y41  C1   N2   SING  N  N  14  
Y41  C13  C3   DOUB  Y  N  15  
Y41  C13  C19  SING  Y  N  16  
Y41  N01  C19  SING  N  N  17  
Y41  C5   C4   SING  Y  N  18  
Y41  C5   C6   SING  N  N  19  
Y41  C3   C10  SING  Y  N  20  
Y41  C19  C21  DOUB  Y  N  21  
Y41  C10  C17  DOUB  Y  N  22  
Y41  C21  C17  SING  Y  N  23  
Y41  C6   N2   SING  N  N  24  
Y41  C6   C01  SING  N  N  25  
Y41  C10  H1   SING  N  N  26  
Y41  C17  H2   SING  N  N  27  
Y41  C21  H3   SING  N  N  28  
Y41  N01  H4   SING  N  N  29  
Y41  N01  H5   SING  N  N  30  
Y41  C23  H6   SING  N  N  31  
Y41  C23  H7   SING  N  N  32  
Y41  C23  H8   SING  N  N  33  
Y41  N2   H9   SING  N  N  34  
Y41  C6   H10  SING  N  N  35  
Y41  C01  H11  SING  N  N  36  
Y41  C01  H12  SING  N  N  37  
Y41  C01  H13  SING  N  N  38  
Y41  C14  H14  SING  N  N  39  
Y41  C20  H15  SING  N  N  40  
Y41  C22  H16  SING  N  N  41  
Y41  C18  H17  SING  N  N  42  
Y41  C12  H18  SING  N  N  43  
Y41  C9   H19  SING  N  N  44  
Y41  C4   H20  SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y41  SMILES            ACDLabs               12.01  "O=C(c1cccc(N)c1C)NC(C)c2cccc3c2cccc3"  
Y41  InChI             InChI                 1.03   "InChI=1S/C20H20N2O/c1-13-16(10-6-12-19(13)21)20(23)22-14(2)17-11-5-8-15-7-3-4-9-18(15)17/h3-12,14H,21H2,1-2H3,(H,22,23)/t14-/m1/s1"  
Y41  InChIKey          InChI                 1.03   PZEBTCMUWPLVEX-CQSZACIVSA-N  
Y41  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](NC(=O)c1cccc(N)c1C)c2cccc3ccccc23"  
Y41  SMILES            CACTVS                3.385  "C[CH](NC(=O)c1cccc(N)c1C)c2cccc3ccccc23"  
Y41  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(cccc1N)C(=O)N[C@H](C)c2cccc3c2cccc3"  
Y41  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(cccc1N)C(=O)NC(C)c2cccc3c2cccc3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y41  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-amino-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide"  
Y41  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3-azanyl-2-methyl-~{N}-[(1~{R})-1-naphthalen-1-ylethyl]benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y41  "Create component"  2020-08-04  RCSB  
Y41  "Initial release"   2020-08-12  RCSB  
##
