data_Y71
# 
_chem_comp.id                                    Y71 
_chem_comp.name                                  "(1S,2S)-2-((S)-2-(((((1S,2S,4S)-bicyclo[2.2.1]hept-5-en-2-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H35 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-02-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        501.594 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y71 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LKX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y71 C1  C1  C 0 1 N N N N N N 10.610 23.947 26.309 -2.760 -0.433 -0.060 C1  Y71 1  
Y71 C10 C2  C 0 1 N N S N N N 7.193  21.006 26.252 4.095  -2.086 -0.312 C10 Y71 2  
Y71 C11 C3  C 0 1 N N N N N N 6.232  20.878 25.087 5.258  -2.628 -1.113 C11 Y71 3  
Y71 C12 C4  C 0 1 N N N N N N 5.444  22.640 26.391 4.593  -4.352 0.295  C12 Y71 4  
Y71 C13 C5  C 0 1 N N N N N N 6.413  21.847 27.253 3.962  -3.067 0.876  C13 Y71 5  
Y71 C14 C6  C 0 1 N N S N N N 8.959  18.462 28.597 3.577  1.204  1.618  C14 Y71 6  
Y71 C15 C7  C 0 1 N N N N N N 9.042  25.733 26.314 -5.084 -0.975 -0.034 C15 Y71 7  
Y71 C16 C8  C 0 1 N N S N N N 8.871  26.398 24.966 -6.254 -1.043 0.950  C16 Y71 8  
Y71 C17 C9  C 0 1 N N S N N N 10.028 27.374 24.581 -7.539 -1.574 0.238  C17 Y71 9  
Y71 C18 C10 C 0 1 N N N N N N 9.336  28.179 23.479 -8.652 -0.943 1.152  C18 Y71 10 
Y71 C19 C11 C 0 1 N N N N N N 10.107 28.408 25.662 -7.678 -0.678 -0.999 C19 Y71 11 
Y71 C2  C12 C 0 1 N N S N N N 11.663 22.132 27.511 -0.387 0.083  -0.261 C2  Y71 12 
Y71 C20 C13 C 0 1 N N N N N N 9.044  29.184 25.550 -8.019 0.532  -0.600 C20 Y71 13 
Y71 C21 C14 C 0 1 N N S N N N 8.219  28.662 24.413 -8.132 0.524  0.929  C21 Y71 14 
Y71 C22 C15 C 0 1 N N N N N N 7.631  27.305 24.886 -6.653 0.377  1.421  C22 Y71 15 
Y71 C3  C16 C 0 1 N N N N N N 12.801 21.899 28.502 -0.345 1.459  -0.929 C3  Y71 16 
Y71 C4  C17 C 0 1 N N N N N N 14.185 22.328 28.015 -1.490 1.571  -1.937 C4  Y71 17 
Y71 C5  C18 C 0 1 N N N N N N 15.239 22.083 29.089 -1.525 2.988  -2.514 C5  Y71 18 
Y71 C6  C19 C 0 1 N N N N N N 14.561 21.613 26.728 -1.273 0.566  -3.069 C6  Y71 19 
Y71 C7  C20 C 0 1 N N N N N N 10.345 21.591 28.068 0.810  -0.075 0.641  C7  Y71 20 
Y71 C8  C21 C 0 1 N N S N N N 8.652  19.806 27.960 3.218  -0.152 1.005  C8  Y71 21 
Y71 C9  C22 C 0 1 N N N N N N 7.685  19.667 26.786 4.404  -0.674 0.192  C9  Y71 22 
Y71 N1  N1  N 0 1 N N N N N N 11.560 23.540 27.166 -1.614 -0.039 0.530  N1  Y71 23 
Y71 N2  N2  N 0 1 N N N N N N 9.890  20.456 27.532 2.055  0.001  0.128  N2  Y71 24 
Y71 N3  N3  N 0 1 N N N N N N 5.262  21.767 25.238 5.519  -3.896 -0.749 N3  Y71 25 
Y71 O1  O1  O 0 1 N N N N N N 9.965  23.205 25.607 -2.774 -0.693 -1.247 O1  Y71 26 
Y71 O2  O2  O 0 1 N N N N N N 6.349  20.091 24.135 5.867  -2.010 -1.960 O2  Y71 27 
Y71 O3  O3  O 0 1 N N N N N N 7.789  17.877 29.160 4.780  1.079  2.380  O3  Y71 28 
Y71 O4  O4  O 0 1 N N N N N N 9.742  22.205 28.946 0.654  -0.269 1.828  O4  Y71 29 
Y71 O5  O5  O 0 1 N N N N N N 10.409 25.267 26.436 -3.887 -0.545 0.668  O5  Y71 30 
Y71 H1  H1  H 0 1 N N N N N N 8.066  21.587 25.919 3.184  -2.085 -0.910 H1  Y71 31 
Y71 H2  H2  H 0 1 N N N N N N 5.876  23.607 26.094 5.137  -4.889 1.072  H2  Y71 32 
Y71 H3  H3  H 0 1 N N N N N N 4.492  22.810 26.916 3.822  -4.990 -0.135 H3  Y71 33 
Y71 H4  H4  H 0 1 N N N N N N 5.870  21.206 27.963 4.524  -2.712 1.740  H4  Y71 34 
Y71 H5  H5  H 0 1 N N N N N N 7.085  22.520 27.806 2.915  -3.228 1.133  H5  Y71 35 
Y71 H6  H6  H 0 1 N N N N N N 9.674  18.649 29.412 2.767  1.534  2.268  H6  Y71 36 
Y71 S1  S1  S 0 1 N Y N N N N 9.322  17.808 27.832 3.824  2.419  0.294  S1  Y71 37 
Y71 H8  H8  H 0 1 N N N N N N 8.826  26.457 27.113 -4.916 -1.961 -0.468 H8  Y71 38 
Y71 H9  H9  H 0 1 N N N N N N 8.352  24.880 26.395 -5.316 -0.264 -0.826 H9  Y71 39 
Y71 H10 H10 H 0 1 N N N N N N 8.794  25.623 24.189 -6.001 -1.673 1.802  H10 Y71 40 
Y71 H11 H11 H 0 1 N N N N N N 10.974 26.890 24.298 -7.585 -2.649 0.063  H11 Y71 41 
Y71 H12 H12 H 0 1 N N N N N N 8.971  27.557 22.648 -9.655 -1.095 0.753  H12 Y71 42 
Y71 H13 H13 H 0 1 N N N N N N 9.956  28.996 23.081 -8.570 -1.261 2.191  H13 Y71 43 
Y71 H14 H14 H 0 1 N N N N N N 10.891 28.502 26.399 -7.522 -0.985 -2.022 H14 Y71 44 
Y71 H16 H16 H 0 1 N N N N N N 11.896 21.564 26.598 -0.370 -0.693 -1.026 H16 Y71 45 
Y71 H17 H17 H 0 1 N N N N N N 8.811  30.040 26.166 -8.191 1.383  -1.242 H17 Y71 46 
Y71 H19 H19 H 0 1 N N N N N N 7.495  29.363 23.971 -8.714 1.324  1.386  H19 Y71 47 
Y71 H20 H20 H 0 1 N N N N N N 7.150  27.404 25.870 -6.601 0.452  2.507  H20 Y71 48 
Y71 H21 H21 H 0 1 N N N N N N 6.903  26.915 24.160 -6.016 1.128  0.952  H21 Y71 49 
Y71 H22 H22 H 0 1 N N N N N N 12.574 22.461 29.420 -0.452 2.234  -0.170 H22 Y71 50 
Y71 H23 H23 H 0 1 N N N N N N 12.839 20.824 28.730 0.607  1.584  -1.444 H23 Y71 51 
Y71 H24 H24 H 0 1 N N N N N N 14.153 23.408 27.809 -2.436 1.359  -1.439 H24 Y71 52 
Y71 H25 H25 H 0 1 N N N N N N 14.951 22.607 30.012 -0.579 3.201  -3.012 H25 Y71 53 
Y71 H26 H26 H 0 1 N N N N N N 15.315 21.004 29.289 -2.340 3.069  -3.232 H26 Y71 54 
Y71 H27 H27 H 0 1 N N N N N N 16.212 22.461 28.741 -1.679 3.705  -1.707 H27 Y71 55 
Y71 H28 H28 H 0 1 N N N N N N 15.559 21.942 26.403 -0.327 0.778  -3.568 H28 Y71 56 
Y71 H29 H29 H 0 1 N N N N N N 14.571 20.527 26.902 -1.248 -0.444 -2.659 H29 Y71 57 
Y71 H30 H30 H 0 1 N N N N N N 13.824 21.853 25.947 -2.089 0.646  -3.788 H30 Y71 58 
Y71 H31 H31 H 0 1 N N N N N N 8.169  20.438 28.720 2.983  -0.859 1.801  H31 Y71 59 
Y71 H32 H32 H 0 1 N N N N N N 6.815  19.082 27.117 5.293  -0.700 0.822  H32 Y71 60 
Y71 H33 H33 H 0 1 N N N N N N 8.198  19.133 25.972 4.580  -0.015 -0.658 H33 Y71 61 
Y71 H34 H34 H 0 1 N N N N N N 12.194 24.203 27.565 -1.601 0.164  1.479  H34 Y71 62 
Y71 H35 H35 H 0 1 N N N N N N 10.423 20.029 26.801 2.180  0.157  -0.821 H35 Y71 63 
Y71 H36 H36 H 0 1 N N N N N N 4.479  21.833 24.620 6.227  -4.439 -1.128 H36 Y71 64 
Y71 H37 H37 H 0 1 N N N N N N 8.010  17.040 29.550 5.544  0.787  1.864  H37 Y71 65 
Y71 O8  O8  O 0 1 N Y N N N N ?      ?      ?      4.295  3.674  1.014  O8  Y71 66 
Y71 O6  O6  O 0 1 N Y N N N N ?      ?      ?      4.926  2.049  -0.524 O6  Y71 67 
Y71 O7  O7  O 0 1 N Y N N N N ?      ?      ?      2.578  2.791  -0.280 O7  Y71 68 
Y71 H7  H7  H 0 1 N Y N N N N ?      ?      ?      4.470  4.422  0.426  H7  Y71 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y71 C18 C21 SING N N 1  
Y71 C18 C17 SING N N 2  
Y71 O2  C11 DOUB N N 3  
Y71 C21 C22 SING N N 4  
Y71 C21 C20 SING N N 5  
Y71 C17 C16 SING N N 6  
Y71 C17 C19 SING N N 7  
Y71 C22 C16 SING N N 8  
Y71 C16 C15 SING N N 9  
Y71 C11 N3  SING N N 10 
Y71 C11 C10 SING N N 11 
Y71 N3  C12 SING N N 12 
Y71 C20 C19 DOUB N N 13 
Y71 O1  C1  DOUB N N 14 
Y71 C10 C9  SING N N 15 
Y71 C10 C13 SING N N 16 
Y71 C1  O5  SING N N 17 
Y71 C1  N1  SING N N 18 
Y71 C15 O5  SING N N 19 
Y71 C12 C13 SING N N 20 
Y71 C6  C4  SING N N 21 
Y71 C9  C8  SING N N 22 
Y71 N1  C2  SING N N 23 
Y71 C2  C7  SING N N 24 
Y71 C2  C3  SING N N 25 
Y71 N2  C8  SING N N 26 
Y71 N2  C7  SING N N 27 
Y71 C8  C14 SING N N 28 
Y71 C4  C3  SING N N 29 
Y71 C4  C5  SING N N 30 
Y71 C7  O4  DOUB N N 31 
Y71 C14 O3  SING N N 32 
Y71 C10 H1  SING N N 33 
Y71 C12 H2  SING N N 34 
Y71 C12 H3  SING N N 35 
Y71 C13 H4  SING N N 36 
Y71 C13 H5  SING N N 37 
Y71 C14 H6  SING N N 38 
Y71 C14 S1  SING N N 39 
Y71 C15 H8  SING N N 40 
Y71 C15 H9  SING N N 41 
Y71 C16 H10 SING N N 42 
Y71 C17 H11 SING N N 43 
Y71 C18 H12 SING N N 44 
Y71 C18 H13 SING N N 45 
Y71 C19 H14 SING N N 46 
Y71 C2  H16 SING N N 47 
Y71 C20 H17 SING N N 48 
Y71 C21 H19 SING N N 49 
Y71 C22 H20 SING N N 50 
Y71 C22 H21 SING N N 51 
Y71 C3  H22 SING N N 52 
Y71 C3  H23 SING N N 53 
Y71 C4  H24 SING N N 54 
Y71 C5  H25 SING N N 55 
Y71 C5  H26 SING N N 56 
Y71 C5  H27 SING N N 57 
Y71 C6  H28 SING N N 58 
Y71 C6  H29 SING N N 59 
Y71 C6  H30 SING N N 60 
Y71 C8  H31 SING N N 61 
Y71 C9  H32 SING N N 62 
Y71 C9  H33 SING N N 63 
Y71 N1  H34 SING N N 64 
Y71 N2  H35 SING N N 65 
Y71 N3  H36 SING N N 66 
Y71 O3  H37 SING N N 67 
Y71 S1  O8  SING N N 68 
Y71 S1  O6  DOUB N N 69 
Y71 S1  O7  DOUB N N 70 
Y71 O8  H7  SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y71 InChI            InChI                1.03  "InChI=1S/C22H35N3O8S/c1-12(2)7-17(25-22(29)33-11-16-9-13-3-4-14(16)8-13)20(27)24-18(21(28)34(30,31)32)10-15-5-6-23-19(15)26/h3-4,12-18,21,28H,5-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,14+,15-,16+,17-,18-,21-/m0/s1" 
Y71 InChIKey         InChI                1.03  WZJYVJHLXCYWFV-JBKSVKCVSA-N                                                                                                                                                                                                             
Y71 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2C[C@H]1C=C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                      
Y71 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2C[CH]1C=C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                 
Y71 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@@H]3C[C@H]2C=C3"                                                                                                                                            
Y71 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC2C=C3"                                                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           Y71 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[[(2~{S})-2-[[(1~{S},2~{S},4~{S})-2-bicyclo[2.2.1]hept-5-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y71 "Create component" 2021-02-08 RCSB 
Y71 "Modify name"      2021-02-09 RCSB 
Y71 "Initial release"  2021-02-17 RCSB 
Y71 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y71 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
