data_542
# 
_chem_comp.id                                    542 
_chem_comp.name                                  "N-[(E)-3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-methylaminopurin-9-yl)oxolan-2-yl]prop-2-enyl]-5-(4-fluorophenyl)-2,3-dihydroxy-benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H25 F N6 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-06-22 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        536.512 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     542 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3HVH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
542 F30  F30  F 0 1 N N N 0.420   7.192  17.897 1.988  -5.996 1.181  F30  542 1  
542 C29  C29  C 0 1 Y N N 0.437   8.395  17.225 2.626  -4.834 0.923  C29  542 2  
542 C26  C26  C 0 1 Y N N -0.432  9.353  17.626 4.011  -4.796 0.899  C26  542 3  
542 C25  C25  C 0 1 Y N N -0.421  10.562 16.954 4.667  -3.611 0.635  C25  542 4  
542 C28  C28  C 0 1 Y N N 1.368   8.556  16.246 1.894  -3.684 0.677  C28  542 5  
542 C27  C27  C 0 1 Y N N 1.373   9.815  15.594 2.541  -2.494 0.412  C27  542 6  
542 C24  C24  C 0 1 Y N N 0.504   10.836 15.969 3.934  -2.451 0.393  C24  542 7  
542 C22  C22  C 0 1 Y N N 0.508   12.147 15.306 4.634  -1.174 0.109  C22  542 8  
542 C21  C21  C 0 1 Y N N -0.700  12.817 15.007 3.901  -0.019 -0.132 C21  542 9  
542 C23  C23  C 0 1 Y N N 1.741   12.670 14.802 6.030  -1.134 0.090  C23  542 10 
542 C33  C33  C 0 1 Y N N 1.747   13.903 14.144 6.688  0.053  -0.173 C33  542 11 
542 O34  O34  O 0 1 N N N 2.933   14.437 13.673 8.047  0.086  -0.190 O34  542 12 
542 C31  C31  C 0 1 Y N N 0.542   14.584 13.896 5.962  1.215  -0.421 C31  542 13 
542 O32  O32  O 0 1 N N N 0.652   15.728 13.147 6.609  2.379  -0.680 O32  542 14 
542 C20  C20  C 0 1 Y N N -0.700  14.076 14.356 4.562  1.181  -0.399 C20  542 15 
542 C18  C18  C 0 1 N N N -1.975  14.704 14.160 3.788  2.411  -0.656 C18  542 16 
542 O19  O19  O 0 1 N N N -3.045  14.143 14.368 4.365  3.455  -0.887 O19  542 17 
542 N17  N17  N 0 1 N N N -1.944  16.030 13.833 2.441  2.376  -0.633 N17  542 18 
542 C16  C16  C 0 1 N N N -3.165  16.791 13.732 1.672  3.597  -0.887 C16  542 19 
542 C15  C15  C 0 1 N N N -2.812  18.232 13.843 0.199  3.290  -0.804 C15  542 20 
542 C14  C14  C 0 1 N N N -3.603  19.131 14.394 -0.568 3.975  0.007  C14  542 21 
542 C6   C6   C 0 1 N N R -3.256  20.567 14.508 -2.041 3.668  0.090  C6   542 22 
542 C4   C4   C 0 1 N N S -3.883  21.151 15.770 -2.447 3.372  1.551  C4   542 23 
542 O5   O5   O 0 1 N N N -3.128  22.295 16.223 -3.024 4.531  2.155  O5   542 24 
542 C2   C2   C 0 1 N N R -5.243  21.567 15.212 -3.498 2.246  1.428  C2   542 25 
542 O3   O3   O 0 1 N N N -5.956  22.537 15.999 -4.756 2.676  1.952  O3   542 26 
542 O13  O13  O 0 1 N N N -3.773  21.360 13.400 -2.343 2.453  -0.630 O13  542 27 
542 C1   C1   C 0 1 N N R -4.924  22.133 13.866 -3.603 1.995  -0.093 C1   542 28 
542 N10  N10  N 0 1 Y N N -5.953  21.947 12.843 -3.783 0.567  -0.363 N10  542 29 
542 C9   C9   C 0 1 Y N N -6.573  20.757 12.498 -2.799 -0.329 -0.659 C9   542 30 
542 C11  C11  C 0 1 Y N N -6.358  22.876 11.914 -4.973 -0.117 -0.358 C11  542 31 
542 N40  N40  N 0 1 Y N N -6.004  24.175 11.844 -6.242 0.210  -0.138 N40  542 32 
542 C39  C39  C 0 1 Y N N -6.553  24.807 10.815 -7.192 -0.699 -0.208 C39  542 33 
542 N38  N38  N 0 1 Y N N -7.413  24.276 9.926  -6.942 -1.963 -0.495 N38  542 34 
542 C35  C35  C 0 1 Y N N -7.760  23.015 10.050 -5.703 -2.384 -0.732 C35  542 35 
542 C12  C12  C 0 1 Y N N -7.225  22.219 11.071 -4.656 -1.450 -0.669 C12  542 36 
542 N8   N8   N 0 1 Y N N -7.326  20.886 11.440 -3.313 -1.511 -0.840 N8   542 37 
542 N7   N7   N 0 1 N N N -8.653  22.558 9.092  -5.451 -3.711 -1.032 N7   542 38 
542 C36  C36  C 0 1 N N N -9.137  21.181 9.091  -6.557 -4.671 -1.092 C36  542 39 
542 H26  H26  H 0 1 N N N -1.113  9.178  18.446 4.578  -5.696 1.087  H26  542 40 
542 H25  H25  H 0 1 N N N -1.156  11.311 17.208 5.746  -3.582 0.617  H25  542 41 
542 H28  H28  H 0 1 N N N 2.062   7.772  15.981 0.814  -3.718 0.692  H28  542 42 
542 H27  H27  H 0 1 N N N 2.069   9.986  14.786 1.969  -1.599 0.219  H27  542 43 
542 H21  H21  H 0 1 N N N -1.640  12.361 15.280 2.822  -0.050 -0.114 H21  542 44 
542 H23  H23  H 0 1 N N N 2.660   12.116 14.929 6.597  -2.033 0.282  H23  542 45 
542 HO34 HO34 H 0 0 N N N 2.874   14.559 12.733 8.435  -0.093 -1.058 HO34 542 46 
542 HO32 HO32 H 0 0 N N N 0.677   16.483 13.723 6.791  2.528  -1.618 HO32 542 47 
542 HN17 HN17 H 0 0 N N N -1.066  16.477 13.662 1.980  1.543  -0.448 HN17 542 48 
542 H16  H16  H 0 1 N N N -3.652  16.596 12.765 1.929  4.350  -0.142 H16  542 49 
542 H16A H16A H 0 0 N N N -3.863  16.504 14.532 1.909  3.975  -1.882 H16A 542 50 
542 H15  H15  H 0 1 N N N -1.859  18.558 13.452 -0.224 2.506  -1.414 H15  542 51 
542 H14  H14  H 0 1 N N N -4.556  18.803 14.783 -0.145 4.759  0.617  H14  542 52 
542 H6   H6   H 0 1 N N N -2.157  20.613 14.519 -2.624 4.500  -0.304 H6   542 53 
542 H4   H4   H 0 1 N N N -3.926  20.477 16.638 -1.586 3.031  2.125  H4   542 54 
542 HO5  HO5  H 0 1 N N N -2.962  22.217 17.155 -2.425 5.289  2.203  HO5  542 55 
542 H2   H2   H 0 1 N N N -5.919  20.699 15.199 -3.158 1.347  1.943  H2   542 56 
542 HO3  HO3  H 0 1 N N N -6.113  22.187 16.868 -4.733 2.905  2.891  HO3  542 57 
542 H1   H1   H 0 1 N N N -4.788  23.218 13.989 -4.427 2.569  -0.516 H1   542 58 
542 H9   H9   H 0 1 N N N -6.448  19.832 13.041 -1.748 -0.093 -0.732 H9   542 59 
542 H39  H39  H 0 1 N N N -6.285  25.844 10.678 -8.213 -0.400 -0.023 H39  542 60 
542 HN7  HN7  H 0 1 N N N -9.468  23.129 9.190  -4.543 -4.006 -1.202 HN7  542 61 
542 H36  H36  H 0 1 N N N -9.259  20.835 8.054  -6.167 -5.659 -1.340 H36  542 62 
542 H36A H36A H 0 0 N N N -8.411  20.537 9.609  -7.057 -4.710 -0.125 H36A 542 63 
542 H36B H36B H 0 0 N N N -10.106 21.133 9.609  -7.268 -4.359 -1.857 H36B 542 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
542 F30 C29  SING N N 1  
542 C29 C26  DOUB Y N 2  
542 C29 C28  SING Y N 3  
542 C26 C25  SING Y N 4  
542 C25 C24  DOUB Y N 5  
542 C28 C27  DOUB Y N 6  
542 C27 C24  SING Y N 7  
542 C24 C22  SING Y N 8  
542 C22 C21  DOUB Y N 9  
542 C22 C23  SING Y N 10 
542 C21 C20  SING Y N 11 
542 C23 C33  DOUB Y N 12 
542 C33 O34  SING N N 13 
542 C33 C31  SING Y N 14 
542 C31 O32  SING N N 15 
542 C31 C20  DOUB Y N 16 
542 C20 C18  SING N N 17 
542 C18 O19  DOUB N N 18 
542 C18 N17  SING N N 19 
542 N17 C16  SING N N 20 
542 C16 C15  SING N N 21 
542 C15 C14  DOUB N N 22 
542 C14 C6   SING N N 23 
542 C6  C4   SING N N 24 
542 C6  O13  SING N N 25 
542 C4  O5   SING N N 26 
542 C4  C2   SING N N 27 
542 C2  O3   SING N N 28 
542 C2  C1   SING N N 29 
542 O13 C1   SING N N 30 
542 C1  N10  SING N N 31 
542 N10 C9   SING Y N 32 
542 N10 C11  SING Y E 33 
542 C9  N8   DOUB Y N 34 
542 C11 N40  DOUB Y N 35 
542 C11 C12  SING Y N 36 
542 N40 C39  SING Y N 37 
542 C39 N38  DOUB Y N 38 
542 N38 C35  SING Y N 39 
542 C35 C12  DOUB Y N 40 
542 C35 N7   SING N N 41 
542 C12 N8   SING Y N 42 
542 N7  C36  SING N N 43 
542 C26 H26  SING N N 44 
542 C25 H25  SING N N 45 
542 C28 H28  SING N N 46 
542 C27 H27  SING N N 47 
542 C21 H21  SING N N 48 
542 C23 H23  SING N N 49 
542 O34 HO34 SING N N 50 
542 O32 HO32 SING N N 51 
542 N17 HN17 SING N N 52 
542 C16 H16  SING N N 53 
542 C16 H16A SING N N 54 
542 C15 H15  SING N N 55 
542 C14 H14  SING N N 56 
542 C6  H6   SING N N 57 
542 C4  H4   SING N N 58 
542 O5  HO5  SING N N 59 
542 C2  H2   SING N N 60 
542 O3  HO3  SING N N 61 
542 C1  H1   SING N N 62 
542 C9  H9   SING N N 63 
542 C39 H39  SING N N 64 
542 N7  HN7  SING N N 65 
542 C36 H36  SING N N 66 
542 C36 H36A SING N N 67 
542 C36 H36B SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
542 SMILES           ACDLabs              10.04 "Fc1ccc(cc1)c2cc(c(O)c(O)c2)C(=O)NC/C=C/C5OC(n4cnc3c(ncnc34)NC)C(O)C5O" 
542 SMILES_CANONICAL CACTVS               3.341 "CNc1ncnc2n(cnc12)[C@@H]3O[C@H](/C=C/CNC(=O)c4cc(cc(O)c4O)c5ccc(F)cc5)[C@@H](O)[C@H]3O" 
542 SMILES           CACTVS               3.341 "CNc1ncnc2n(cnc12)[CH]3O[CH](C=CCNC(=O)c4cc(cc(O)c4O)c5ccc(F)cc5)[CH](O)[CH]3O" 
542 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)\C=C\CNC(=O)c4cc(cc(c4O)O)c5ccc(cc5)F)O)O" 
542 SMILES           "OpenEye OEToolkits" 1.5.0 "CNc1c2c(ncn1)n(cn2)C3C(C(C(O3)C=CCNC(=O)c4cc(cc(c4O)O)c5ccc(cc5)F)O)O" 
542 InChI            InChI                1.03  
"InChI=1S/C26H25FN6O6/c1-28-23-19-24(31-11-30-23)33(12-32-19)26-22(37)21(36)18(39-26)3-2-8-29-25(38)16-9-14(10-17(34)20(16)35)13-4-6-15(27)7-5-13/h2-7,9-12,18,21-22,26,34-37H,8H2,1H3,(H,29,38)(H,28,30,31)/b3-2+/t18-,21-,22-,26-/m1/s1" 
542 InChIKey         InChI                1.03  NSQDVYXOGVOLPV-WKWRZTKWSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
542 "SYSTEMATIC NAME" ACDLabs              10.04 "N-methyl-9-[(5E)-5,6,7-trideoxy-7-{[(4'-fluoro-4,5-dihydroxybiphenyl-3-yl)carbonyl]amino}-beta-D-ribo-hept-5-enofuranosyl]-9H-purin-6-amine" 
542 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(E)-3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-methylaminopurin-9-yl)oxolan-2-yl]prop-2-enyl]-5-(4-fluorophenyl)-2,3-dihydroxy-benzamide"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
542 "Create component"     2009-06-22 PDBJ 
542 "Modify aromatic_flag" 2011-06-04 RCSB 
542 "Modify descriptor"    2011-06-04 RCSB 
# 
