data_DP2
#

_chem_comp.id                                   DP2
_chem_comp.name                                 "L-LYSYL-N~5~-[(Z)-(2,2-DIHYDROXYHYDRAZINO)(IMINO)METHYL]-L-ORNITHINAMIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H28 N8 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "D-LYSINE-D-NITROARGININE AMIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-12-18
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       348.402
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DP2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1RS6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DP2  N1      N1      N  0  1  N  N  N  14.709   1.535  21.207   1.530   0.219  -6.996  N1      DP2   1  
DP2  O2      O2      O  0  1  N  N  N  14.393   2.115  20.121   2.930   0.641  -7.009  O2      DP2   2  
DP2  O3      O3      O  0  1  N  N  N  15.791   0.830  21.281   1.430  -0.932  -7.893  O3      DP2   3  
DP2  N       N       N  0  1  N  N  N   7.017   2.606  25.532  -0.977  -0.098   1.356  N       DP2   4  
DP2  CA      CA      C  0  1  N  N  R   7.863   1.637  24.782  -2.266  -0.202   0.668  CA      DP2   5  
DP2  C       C       C  0  1  N  N  N   7.158   1.154  23.502  -3.335   0.452   1.504  C       DP2   6  
DP2  N2      N2      N  0  1  N  N  N   6.707   2.023  22.580  -3.021   1.485   2.311  N2      DP2   7  
DP2  O       O       O  0  1  N  N  N   6.970  -0.016  23.274  -4.478   0.050   1.451  O       DP2   8  
DP2  CB      CB      C  0  1  N  N  N   9.198   2.289  24.423  -2.178   0.497  -0.688  CB      DP2   9  
DP2  CG      CG      C  0  1  N  N  N  10.283   1.271  24.061  -1.093  -0.167  -1.536  CG      DP2  10  
DP2  CD      CD      C  0  1  N  N  N  11.644   1.985  23.987  -1.005   0.532  -2.894  CD      DP2  11  
DP2  NE      NE      N  0  1  N  N  N  12.703   0.971  24.079   0.033  -0.104  -3.706  NE      DP2  12  
DP2  CZ      CZ      C  0  1  N  N  N  13.738   0.844  23.281   0.295   0.358  -4.974  CZ      DP2  13  
DP2  NH1     NH1     N  0  1  N  N  N  13.890   1.698  22.266   1.270  -0.240  -5.736  NH1     DP2  14  
DP2  NH2     NH2     N  0  1  N  N  N  14.609  -0.160  23.526  -0.381   1.363  -5.453  NH2     DP2  15  
DP2  "N'"    "N'"    N  0  1  N  N  N   4.400   2.643  28.100   1.265  -2.307   3.175  "N'"    DP2  16  
DP2  "CA'"   "CA'"   C  0  1  N  N  R   5.025   3.289  26.892   0.738  -0.960   2.916  "CA'"   DP2  17  
DP2  "C'"    "C'"    C  0  1  N  N  N   5.819   2.229  26.093  -0.588  -1.067   2.209  "C'"    DP2  18  
DP2  "O'"    "O'"    O  0  1  N  N  N   5.420   1.038  25.982  -1.305  -2.025   2.407  "O'"    DP2  19  
DP2  "CB'"   "CB'"   C  0  1  N  N  N   3.902   3.975  26.070   0.550  -0.222   4.243  "CB'"   DP2  20  
DP2  "CG'"   "CG'"   C  0  1  N  N  N   3.051   5.028  26.841   1.897  -0.113   4.961  "CG'"   DP2  21  
DP2  "CD'"   "CD'"   C  0  1  N  N  N   2.849   6.272  25.953   1.709   0.624   6.288  "CD'"   DP2  22  
DP2  "CE'"   "CE'"   C  0  1  N  N  N   1.753   7.231  26.487   3.056   0.732   7.006  "CE'"   DP2  23  
DP2  "NZ'"   "NZ'"   N  0  1  N  N  N   0.918   7.637  25.332   2.876   1.441   8.280  "NZ'"   DP2  24  
DP2  HO2     HO2     H  0  1  N  N  N  13.598   2.632  20.066   3.116   0.967  -7.901  HO2     DP2  25  
DP2  HO3     HO3     H  0  1  N  N  N  16.027   0.396  22.092   1.613  -0.608  -8.785  HO3     DP2  26  
DP2  HN      HN      H  0  1  N  N  N   7.272   3.583  25.669  -0.403   0.667   1.197  HN      DP2  27  
DP2  HA      HA      H  0  1  N  N  N   8.040   0.750  25.435  -2.515  -1.253   0.519  HA      DP2  28  
DP2  HN21    1HN2    H  0  0  N  N  N   6.865   3.011  22.772  -3.709   1.907   2.849  HN21    DP2  29  
DP2  HN22    2HN2    H  0  0  N  N  N   6.239   1.702  21.731  -2.107   1.807   2.354  HN22    DP2  30  
DP2  HB1     1HB     H  0  1  N  N  N   9.068   3.039  23.608  -3.138   0.420  -1.199  HB1     DP2  31  
DP2  HB2     2HB     H  0  1  N  N  N   9.543   2.965  25.239  -1.930   1.548  -0.539  HB2     DP2  32  
DP2  HG1     1HG     H  0  1  N  N  N  10.298   0.402  24.760  -0.134  -0.090  -1.025  HG1     DP2  33  
DP2  HG2     2HG     H  0  1  N  N  N  10.045   0.715  23.124  -1.342  -1.218  -1.685  HG2     DP2  34  
DP2  HD1     1HD     H  0  1  N  N  N  11.742   2.627  23.081  -1.965   0.455  -3.405  HD1     DP2  35  
DP2  HD2     2HD     H  0  1  N  N  N  11.750   2.787  24.754  -0.757   1.583  -2.745  HD2     DP2  36  
DP2  HNE     HNE     H  0  1  N  N  N  12.231   0.066  24.078   0.537  -0.852  -3.349  HNE     DP2  37  
DP2  HH1     HH1     H  0  1  N  N  N  12.957   1.861  21.885   1.774  -0.988  -5.380  HH1     DP2  38  
DP2  HH2     HH2     H  0  1  N  N  N  14.281  -1.108  23.341  -0.197   1.689  -6.348  HH2     DP2  39  
DP2  "HN'1"  "1HN'"  H  0  0  N  N  N   3.876   3.342  28.626   0.586  -2.777   3.754  "HN'1"  DP2  40  
DP2  "HN'2"  "2HN'"  H  0  0  N  N  N   5.087   2.160  28.678   1.274  -2.789   2.289  "HN'2"  DP2  41  
DP2  "HA'"   "HA'"   H  0  1  N  N  N   5.759   4.077  27.178   1.440  -0.409   2.290  "HA'"   DP2  42  
DP2  "HB'1"  "1HB'"  H  0  0  N  N  N   4.330   4.432  25.147  -0.151  -0.773   4.869  "HB'1"  DP2  43  
DP2  "HB'2"  "2HB'"  H  0  0  N  N  N   3.235   3.203  25.617   0.159   0.776   4.051  "HB'2"  DP2  44  
DP2  "HG'1"  "1HG'"  H  0  0  N  N  N   2.084   4.606  27.202   2.599   0.437   4.335  "HG'1"  DP2  45  
DP2  "HG'2"  "2HG'"  H  0  0  N  N  N   3.493   5.284  27.832   2.288  -1.113   5.153  "HG'2"  DP2  46  
DP2  "HD'1"  "1HD'"  H  0  0  N  N  N   3.812   6.813  25.803   1.007   0.073   6.914  "HD'1"  DP2  47  
DP2  "HD'2"  "2HD'"  H  0  0  N  N  N   2.639   5.977  24.898   1.318   1.623   6.096  "HD'2"  DP2  48  
DP2  "HE'1"  "1HE'"  H  0  0  N  N  N   1.158   6.790  27.320   3.447  -0.266   7.198  "HE'1"  DP2  49  
DP2  "HE'2"  "2HE'"  H  0  0  N  N  N   2.170   8.099  27.049   3.758   1.283   6.380  "HE'2"  DP2  50  
DP2  "HZ'1"  "1HZ'"  H  0  0  N  N  N   0.197   8.267  25.683   3.785   1.489   8.716  "HZ'1"  DP2  51  
DP2  "HZ'2"  "2HZ'"  H  0  0  N  N  N   0.536   6.843  24.817   2.614   2.388   8.051  "HZ'2"  DP2  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DP2  N1     O2      SING  N  N   1  
DP2  N1     O3      SING  N  N   2  
DP2  N1     NH1     SING  N  N   3  
DP2  O2     HO2     SING  N  N   4  
DP2  O3     HO3     SING  N  N   5  
DP2  N      CA      SING  N  N   6  
DP2  N      "C'"    SING  N  N   7  
DP2  N      HN      SING  N  N   8  
DP2  CA     C       SING  N  N   9  
DP2  CA     CB      SING  N  N  10  
DP2  CA     HA      SING  N  N  11  
DP2  C      N2      SING  N  N  12  
DP2  C      O       DOUB  N  N  13  
DP2  N2     HN21    SING  N  N  14  
DP2  N2     HN22    SING  N  N  15  
DP2  CB     CG      SING  N  N  16  
DP2  CB     HB1     SING  N  N  17  
DP2  CB     HB2     SING  N  N  18  
DP2  CG     CD      SING  N  N  19  
DP2  CG     HG1     SING  N  N  20  
DP2  CG     HG2     SING  N  N  21  
DP2  CD     NE      SING  N  N  22  
DP2  CD     HD1     SING  N  N  23  
DP2  CD     HD2     SING  N  N  24  
DP2  NE     CZ      SING  N  N  25  
DP2  NE     HNE     SING  N  N  26  
DP2  CZ     NH1     SING  N  N  27  
DP2  CZ     NH2     DOUB  N  N  28  
DP2  NH1    HH1     SING  N  N  29  
DP2  NH2    HH2     SING  N  N  30  
DP2  "N'"   "CA'"   SING  N  N  31  
DP2  "N'"   "HN'1"  SING  N  N  32  
DP2  "N'"   "HN'2"  SING  N  N  33  
DP2  "CA'"  "C'"    SING  N  N  34  
DP2  "CA'"  "CB'"   SING  N  N  35  
DP2  "CA'"  "HA'"   SING  N  N  36  
DP2  "C'"   "O'"    DOUB  N  N  37  
DP2  "CB'"  "CG'"   SING  N  N  38  
DP2  "CB'"  "HB'1"  SING  N  N  39  
DP2  "CB'"  "HB'2"  SING  N  N  40  
DP2  "CG'"  "CD'"   SING  N  N  41  
DP2  "CG'"  "HG'1"  SING  N  N  42  
DP2  "CG'"  "HG'2"  SING  N  N  43  
DP2  "CD'"  "CE'"   SING  N  N  44  
DP2  "CD'"  "HD'1"  SING  N  N  45  
DP2  "CD'"  "HD'2"  SING  N  N  46  
DP2  "CE'"  "NZ'"   SING  N  N  47  
DP2  "CE'"  "HE'1"  SING  N  N  48  
DP2  "CE'"  "HE'2"  SING  N  N  49  
DP2  "NZ'"  "HZ'1"  SING  N  N  50  
DP2  "NZ'"  "HZ'2"  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DP2  SMILES            ACDLabs               10.04  "O=C(N)C(NC(=O)C(N)CCCCN)CCCNC(=[N@H])NN(O)O"  
DP2  SMILES_CANONICAL  CACTVS                3.341  "NCCCC[C@@H](N)C(=O)N[C@H](CCCNC(=N)NN(O)O)C(N)=O"  
DP2  SMILES            CACTVS                3.341  "NCCCC[CH](N)C(=O)N[CH](CCCNC(=N)NN(O)O)C(N)=O"  
DP2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C(CCN)C[C@H](C(=O)N[C@H](CCCNC(=N)NN(O)O)C(=O)N)N"  
DP2  SMILES            "OpenEye OEToolkits"  1.5.0  "C(CCN)CC(C(=O)NC(CCCNC(=N)NN(O)O)C(=O)N)N"  
DP2  InChI             InChI                 1.03   "InChI=1S/C12H28N8O4/c13-6-2-1-4-8(14)11(22)18-9(10(15)21)5-3-7-17-12(16)19-20(23)24/h8-9,23-24H,1-7,13-14H2,(H2,15,21)(H,18,22)(H3,16,17,19)/t8-,9-/m1/s1"  
DP2  InChIKey          InChI                 1.03   VKBOUZQMRKGFCB-RKDXNWHRSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DP2  "SYSTEMATIC NAME"  ACDLabs               10.04  "D-lysyl-N~5~-[(E)-(2,2-dihydroxyhydrazino)(imino)methyl]-D-ornithinamide"  
DP2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R)-2,6-diamino-N-[(2R)-1-amino-5-[[N-(dihydroxyamino)carbamimidoyl]amino]-1-oxo-pentan-2-yl]hexanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DP2  "Create component"   2003-12-18  RCSB  
DP2  "Modify descriptor"  2011-06-04  RCSB  
DP2  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DP2
_pdbx_chem_comp_synonyms.name        "D-LYSINE-D-NITROARGININE AMIDE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
