data_JY2
#

_chem_comp.id                                   JY2
_chem_comp.name                                 8-methyl-9-pent-4-ynyl-purin-6-amine
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H13 N5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-11
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       215.254
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JY2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RC2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JY2  C2   C1   C  0  1  Y  N  N  21.802  11.485  12.633   2.098   2.265   0.393  C2   JY2   1  
JY2  C4   C2   C  0  1  Y  N  N  19.498  11.602  12.747   0.841   0.341   0.404  C4   JY2   2  
JY2  C5   C3   C  0  1  Y  N  N  19.536  12.893  12.233   1.922  -0.356  -0.160  C5   JY2   3  
JY2  C6   C4   C  0  1  Y  N  N  20.775  13.446  11.933   3.107   0.354  -0.419  C6   JY2   4  
JY2  C8   C5   C  0  1  Y  N  N  17.490  12.365  12.574   0.305  -1.776   0.103  C8   JY2   5  
JY2  N1   N1   N  0  1  Y  N  N  21.880  12.715  12.146   3.143   1.651  -0.133  N1   JY2   6  
JY2  CAA  C6   C  0  1  N  N  N  14.413   8.188  13.634  -5.488   1.035  -1.388  CAA  JY2   7  
JY2  CAB  C7   C  0  1  N  N  N  15.966  12.424  12.655  -0.479  -3.063   0.089  CAB  JY2   8  
JY2  CAD  C8   C  0  1  N  N  N  15.493   8.006  13.219  -4.757   0.728  -0.523  CAD  JY2   9  
JY2  CAF  C9   C  0  1  N  N  N  16.838   7.784  12.673  -3.840   0.342   0.562  CAF  JY2  10  
JY2  CAG  C10  C  0  1  N  N  N  17.472   9.115  12.269  -2.449   0.076  -0.016  CAG  JY2  11  
JY2  CAH  C11  C  0  1  N  N  N  17.650  10.069  13.458  -1.496  -0.325   1.112  CAH  JY2  12  
JY2  N3   N2   N  0  1  Y  N  N  20.640  10.924  12.931   0.973   1.638   0.662  N3   JY2  13  
JY2  N6   N3   N  0  1  N  N  N  20.866  14.681  11.443   4.207  -0.280  -0.970  N6   JY2  14  
JY2  N7   N4   N  0  1  Y  N  N  18.282  13.343  12.139   1.529  -1.643  -0.318  N7   JY2  15  
JY2  N9   N5   N  0  1  Y  N  N  18.216  11.319  12.933  -0.164  -0.580   0.559  N9   JY2  16  
JY2  H1   H1   H  0  1  N  N  N  22.711  10.924  12.791   2.172   3.319   0.615  H1   JY2  17  
JY2  H2   H2   H  0  1  N  N  N  13.436   8.353  14.010  -6.142   1.310  -2.163  H2   JY2  18  
JY2  H3   H3   H  0  1  N  N  N  15.617  13.404  12.297  -1.016  -3.152  -0.855  H3   JY2  19  
JY2  H4   H4   H  0  1  N  N  N  15.535  11.630  12.028   0.204  -3.906   0.199  H4   JY2  20  
JY2  H5   H5   H  0  1  N  N  N  15.649  12.281  13.698  -1.192  -3.064   0.914  H5   JY2  21  
JY2  H6   H6   H  0  1  N  N  N  16.768   7.132  11.790  -3.782   1.149   1.293  H6   JY2  22  
JY2  H7   H7   H  0  1  N  N  N  17.465   7.300  13.437  -4.211  -0.561   1.047  H7   JY2  23  
JY2  H8   H8   H  0  1  N  N  N  18.459   8.915  11.827  -2.507  -0.731  -0.746  H8   JY2  24  
JY2  H9   H9   H  0  1  N  N  N  16.827   9.600  11.522  -2.078   0.979  -0.501  H9   JY2  25  
JY2  H10  H10  H  0  1  N  N  N  16.677  10.266  13.932  -1.438   0.482   1.843  H10  JY2  26  
JY2  H11  H11  H  0  1  N  N  N  18.335   9.627  14.197  -1.867  -1.228   1.597  H11  JY2  27  
JY2  H12  H12  H  0  1  N  N  N  21.827  14.909  11.290   5.016   0.223  -1.151  H12  JY2  28  
JY2  H13  H13  H  0  1  N  N  N  20.369  14.733  10.577   4.168  -1.227  -1.175  H13  JY2  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JY2  N6   C6   SING  N  N   1  
JY2  C6   N1   DOUB  Y  N   2  
JY2  C6   C5   SING  Y  N   3  
JY2  N7   C5   SING  Y  N   4  
JY2  N7   C8   DOUB  Y  N   5  
JY2  N1   C2   SING  Y  N   6  
JY2  C5   C4   DOUB  Y  N   7  
JY2  CAG  CAF  SING  N  N   8  
JY2  CAG  CAH  SING  N  N   9  
JY2  C8   CAB  SING  N  N  10  
JY2  C8   N9   SING  Y  N  11  
JY2  C2   N3   DOUB  Y  N  12  
JY2  CAF  CAD  SING  N  N  13  
JY2  C4   N3   SING  Y  N  14  
JY2  C4   N9   SING  Y  N  15  
JY2  N9   CAH  SING  N  N  16  
JY2  CAD  CAA  TRIP  N  N  17  
JY2  C2   H1   SING  N  N  18  
JY2  CAA  H2   SING  N  N  19  
JY2  CAB  H3   SING  N  N  20  
JY2  CAB  H4   SING  N  N  21  
JY2  CAB  H5   SING  N  N  22  
JY2  CAF  H6   SING  N  N  23  
JY2  CAF  H7   SING  N  N  24  
JY2  CAG  H8   SING  N  N  25  
JY2  CAG  H9   SING  N  N  26  
JY2  CAH  H10  SING  N  N  27  
JY2  CAH  H11  SING  N  N  28  
JY2  N6   H12  SING  N  N  29  
JY2  N6   H13  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JY2  InChI             InChI                 1.03   "InChI=1S/C11H13N5/c1-3-4-5-6-16-8(2)15-9-10(12)13-7-14-11(9)16/h1,7H,4-6H2,2H3,(H2,12,13,14)"  
JY2  InChIKey          InChI                 1.03   XNRGOKLMAXATIA-UHFFFAOYSA-N  
JY2  SMILES_CANONICAL  CACTVS                3.385  "Cc1nc2c(N)ncnc2n1CCCC#C"  
JY2  SMILES            CACTVS                3.385  "Cc1nc2c(N)ncnc2n1CCCC#C"  
JY2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1nc2c(ncnc2n1CCCC#C)N"  
JY2  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1nc2c(ncnc2n1CCCC#C)N"  
#
_pdbx_chem_comp_identifier.comp_id          JY2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       8-methyl-9-pent-4-ynyl-purin-6-amine
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JY2  "Create component"  2019-04-11  RCSB  
JY2  "Initial release"   2020-02-19  RCSB  
##
