data_N52
# 
_chem_comp.id                                    N52 
_chem_comp.name                                  "(2R)-2-(dihydroxymethyl)-2-hydroxy-3-oxobutyl dihydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H11 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-23 
_chem_comp.pdbx_modified_date                    2022-07-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        230.110 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N52 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UF5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N52 C11  C1  C 0 1 N N N -2.782 -5.512 12.460 1.541  1.321  -0.119 C11  N52 1  
N52 C01  C2  C 0 1 N N N -4.692 -6.400 14.545 3.753  -1.162 -0.385 C01  N52 2  
N52 C02  C3  C 0 1 N N N -4.928 -6.414 13.030 2.446  -0.943 0.331  C02  N52 3  
N52 C03  C4  C 0 1 N N R -4.241 -5.428 12.073 1.336  -0.178 -0.343 C03  N52 4  
N52 C04  C5  C 0 1 N N N -5.110 -4.314 12.617 -0.009 -0.604 0.249  C04  N52 5  
N52 O05  O1  O 0 1 N N N -6.380 -4.562 12.133 -1.057 0.158  -0.354 O05  N52 6  
N52 O07  O2  O 0 1 N N N -5.794 -3.240 9.977  -3.098 -1.500 -0.398 O07  N52 7  
N52 O08  O3  O 0 1 N N N -6.969 -5.404 9.788  -2.778 0.142  1.492  O08  N52 8  
N52 O09  O4  O 0 1 N N N -8.162 -3.466 10.745 -3.490 1.077  -0.741 O09  N52 9  
N52 O10  O5  O 0 1 N N N -4.647 -6.368 11.179 1.349  -0.457 -1.745 O10  N52 10 
N52 O12  O6  O 0 1 N N N -2.477 -5.760 11.116 1.469  1.609  1.278  O12  N52 11 
N52 O13  O7  O 0 1 N N N -2.291 -4.357 13.020 2.822  1.707  -0.619 O13  N52 12 
N52 O14  O8  O 0 1 N N N -5.719 -7.206 12.593 2.287  -1.381 1.446  O14  N52 13 
N52 P06  P1  P 0 1 N N N -6.818 -4.141 10.616 -2.609 -0.027 0.032  P06  N52 14 
N52 H012 H1  H 0 0 N N N -5.323 -7.164 15.022 3.710  -0.698 -1.370 H012 N52 15 
N52 H013 H2  H 0 0 N N N -3.634 -6.616 14.753 4.563  -0.714 0.192  H013 N52 16 
N52 H011 H3  H 0 0 N N N -4.950 -5.409 14.947 3.934  -2.231 -0.494 H011 N52 17 
N52 H041 H4  H 0 0 N N N -5.109 -4.329 13.717 -0.173 -1.664 0.055  H041 N52 18 
N52 H042 H5  H 0 0 N N N -4.748 -3.337 12.263 -0.005 -0.427 1.325  H042 N52 19 
N52 H1   H6  H 0 1 N N N -5.457 -3.651 9.190  -3.015 -1.681 -1.344 H1   N52 20 
N52 H2   H7  H 0 1 N N N -8.818 -3.974 10.281 -4.437 1.025  -0.556 H2   N52 21 
N52 H101 H8  H 0 0 N N N -5.235 -6.979 11.607 1.224  -1.391 -1.961 H101 N52 22 
N52 H121 H9  H 0 0 N N N -1.538 -5.870 11.019 2.186  1.220  1.797  H121 N52 23 
N52 H131 H10 H 0 0 N N N -2.564 -4.304 13.928 3.020  2.647  -0.511 H131 N52 24 
N52 H111 H11 H 0 0 N N N -2.605 -6.394 13.093 0.763  1.876  -0.645 H111 N52 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N52 O08 P06  DOUB N N 1  
N52 O07 P06  SING N N 2  
N52 P06 O09  SING N N 3  
N52 P06 O05  SING N N 4  
N52 O12 C11  SING N N 5  
N52 O10 C03  SING N N 6  
N52 C03 C11  SING N N 7  
N52 C03 C04  SING N N 8  
N52 C03 C02  SING N N 9  
N52 O05 C04  SING N N 10 
N52 C11 O13  SING N N 11 
N52 O14 C02  DOUB N N 12 
N52 C02 C01  SING N N 13 
N52 C01 H012 SING N N 14 
N52 C01 H013 SING N N 15 
N52 C01 H011 SING N N 16 
N52 C04 H041 SING N N 17 
N52 C04 H042 SING N N 18 
N52 O07 H1   SING N N 19 
N52 O09 H2   SING N N 20 
N52 O10 H101 SING N N 21 
N52 O12 H121 SING N N 22 
N52 O13 H131 SING N N 23 
N52 C11 H111 SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N52 SMILES           ACDLabs              12.01 "O=P(O)(O)OCC(O)(C(O)O)C(C)=O"                                                                
N52 InChI            InChI                1.03  "InChI=1S/C5H11O8P/c1-3(6)5(9,4(7)8)2-13-14(10,11)12/h4,7-9H,2H2,1H3,(H2,10,11,12)/t5-/m0/s1" 
N52 InChIKey         InChI                1.03  IYNPDRWOJYWTNN-YFKPBYRVSA-N                                                                   
N52 SMILES_CANONICAL CACTVS               3.385 "CC(=O)[C@@](O)(CO[P](O)(O)=O)C(O)O"                                                          
N52 SMILES           CACTVS               3.385 "CC(=O)[C](O)(CO[P](O)(O)=O)C(O)O"                                                            
N52 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)C(COP(=O)(O)O)(C(O)O)O"                                                                
N52 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)C(COP(=O)(O)O)(C(O)O)O"                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N52 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-(dihydroxymethyl)-2-hydroxy-3-oxobutyl dihydrogen phosphate"              
N52 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-[bis(oxidanyl)methyl]-2-oxidanyl-3-oxidanylidene-butyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N52 "Create component" 2022-03-23 RCSB 
N52 "Initial release"  2022-07-20 RCSB 
# 
