data_N82
# 
_chem_comp.id                                    N82 
_chem_comp.name                                  "~{N}-[5-[4-[[4-[[1,3-bis(oxidanylidene)isoindol-2-yl]methyl]phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]-2-[2-(dimethylamino)ethoxy]phenyl]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H33 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-11-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        603.670 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N82 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6TG1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N82 C4  C1  C 0 1 Y N N N N N -43.621 12.156 -2.294 -2.194 -4.762 1.331  C4  N82 1  
N82 C5  C2  C 0 1 Y N N N N N -44.853 11.554 -2.252 -1.843 -3.469 0.907  C5  N82 2  
N82 C6  C3  C 0 1 Y N N N N N -44.889 10.182 -2.223 -0.578 -3.267 0.338  C6  N82 3  
N82 N1  N1  N 0 1 Y N N N N N -43.759 9.456  -2.194 0.237  -4.312 0.224  N1  N82 4  
N82 N3  N2  N 0 1 Y N N N N N -42.473 11.444 -2.255 -1.309 -5.746 1.174  N3  N82 5  
N82 C2  C4  C 0 1 Y N N N N N -42.509 10.072 -2.218 -0.133 -5.511 0.635  C2  N82 6  
N82 CAL C5  C 0 1 Y N N N N N -45.083 13.740 -2.328 -3.937 -3.413 1.766  CAL N82 7  
N82 CAM C6  C 0 1 Y N N N N N -45.758 12.591 -2.305 -2.998 -2.613 1.204  CAM N82 8  
N82 CAN C7  C 0 1 Y N N N N N -47.139 12.648 -2.255 -3.117 -1.159 0.935  CAN N82 9  
N82 CAO C8  C 0 1 Y N N N N N -46.177 8.162  -2.086 1.114  -1.807 -0.563 CAO N82 10 
N82 CAP C9  C 0 1 Y N N N N N -47.050 7.425  -2.898 1.360  -0.855 -1.544 CAP N82 11 
N82 CAQ C10 C 0 1 Y N N N N N -47.196 6.038  -2.758 2.647  -0.652 -2.000 CAQ N82 12 
N82 CAR C11 C 0 1 Y N N N N N -46.473 5.330  -1.789 3.691  -1.395 -1.481 CAR N82 13 
N82 CAS C12 C 0 1 Y N N N N N -45.616 6.054  -0.949 3.450  -2.344 -0.504 CAS N82 14 
N82 CAT C13 C 0 1 Y N N N N N -45.476 7.448  -1.099 2.165  -2.552 -0.043 CAT N82 15 
N82 CAU C14 C 0 1 Y N N N N N -47.907 13.420 -3.142 -4.238 -0.661 0.273  CAU N82 16 
N82 CAV C15 C 0 1 Y N N N N N -49.322 13.481 -3.028 -4.345 0.697  0.025  CAV N82 17 
N82 CAW C16 C 0 1 Y N N N N N -49.968 12.761 -2.007 -3.332 1.562  0.438  CAW N82 18 
N82 CAX C17 C 0 1 Y N N N N N -49.221 12.012 -1.103 -2.219 1.064  1.095  CAX N82 19 
N82 CAY C18 C 0 1 Y N N N N N -47.820 11.967 -1.235 -2.111 -0.288 1.350  CAY N82 20 
N82 CAZ C19 C 0 1 N N N N N N -46.641 3.916  -1.641 5.095  -1.171 -1.980 CAZ N82 21 
N82 CBA C20 C 0 1 N N N N N N -46.032 2.706  -3.808 6.455  -0.389 -0.050 CBA N82 22 
N82 CBB C21 C 0 1 Y N N N N N -44.985 2.036  -4.321 6.950  0.895  0.489  CBB N82 23 
N82 CBC C22 C 0 1 Y N N N N N -44.027 2.020  -3.375 6.477  1.890  -0.391 CBC N82 24 
N82 CBD C23 C 0 1 N N N N N N -44.535 2.688  -2.310 5.711  1.176  -1.434 CBD N82 25 
N82 CBE C24 C 0 1 Y N N N N N -44.810 1.443  -5.504 7.714  1.253  1.588  CBE N82 26 
N82 CBF C25 C 0 1 Y N N N N N -43.606 0.794  -5.809 8.009  2.589  1.814  CBF N82 27 
N82 CBG C26 C 0 1 Y N N N N N -42.604 0.787  -4.830 7.546  3.564  0.951  CBG N82 28 
N82 CBH C27 C 0 1 Y N N N N N -42.848 1.416  -3.615 6.780  3.221  -0.152 CBH N82 29 
N82 CBI C28 C 0 1 N N N N N N -51.870 11.531 -1.565 -2.364 3.724  0.644  CBI N82 30 
N82 CBJ C29 C 0 1 N N N N N N -53.410 11.519 -1.449 -2.658 5.181  0.283  CBJ N82 31 
N82 CBK C30 C 0 1 N N N N N N -53.833 13.487 -2.788 -3.480 5.918  2.438  CBK N82 32 
N82 CBL C31 C 0 1 N N N N N N -55.535 11.841 -2.560 -4.428 6.829  0.405  CBL N82 33 
N82 CBM C32 C 0 1 N N N N N N -50.331 13.650 -5.093 -6.148 0.420  -1.505 CBM N82 34 
N82 CBN C33 C 0 1 N N N N N N -51.223 14.436 -6.103 -7.294 0.993  -2.299 CBN N82 35 
N82 CBO C34 C 0 1 N N N N N N -50.817 14.028 -7.542 -7.887 -0.095 -3.196 CBO N82 36 
N82 NAC N3  N 0 1 Y N N N N N -43.762 13.480 -2.330 -3.460 -4.693 1.849  NAC N82 37 
N82 NAD N4  N 0 1 N N N N N N -46.088 9.523  -2.217 -0.187 -2.011 -0.095 NAD N82 38 
N82 NAE N5  N 0 1 N N N N N N -50.110 14.199 -3.876 -5.470 1.202  -0.641 NAE N82 39 
N82 NAF N6  N 0 1 N N N N N N -45.762 3.125  -2.564 5.745  -0.141 -1.166 NAF N82 40 
N82 NAG N7  N 0 1 N N N N N N -54.066 12.039 -2.658 -3.829 5.646  1.038  NAG N82 41 
N82 OBP O1  O 0 1 N N N N N N -51.362 12.836 -1.916 -3.437 2.896  0.194  OBP N82 42 
N82 OBQ O2  O 0 1 N N N N N N -47.098 2.904  -4.410 6.658  -1.485 0.432  OBQ N82 43 
N82 OBR O3  O 0 1 N N N N N N -43.949 2.893  -1.234 5.146  1.693  -2.377 OBR N82 44 
N82 OBS O4  O 0 1 N N N N N N -49.902 12.542 -5.409 -5.837 -0.744 -1.643 OBS N82 45 
N82 H1  H1  H 0 1 N N N N N N -41.599 9.490  -2.208 0.559  -6.333 0.523  H1  N82 46 
N82 H2  H2  H 0 1 N N N N N N -45.526 14.725 -2.343 -4.912 -3.089 2.099  H2  N82 47 
N82 H3  H3  H 0 1 N N N N N N -47.626 7.940  -3.652 0.544  -0.275 -1.950 H3  N82 48 
N82 H4  H4  H 0 1 N N N N N N -47.876 5.507  -3.407 2.839  0.088  -2.763 H4  N82 49 
N82 H5  H5  H 0 1 N N N N N N -45.058 5.539  -0.181 4.268  -2.923 -0.101 H5  N82 50 
N82 H6  H6  H 0 1 N N N N N N -44.811 7.983  -0.437 1.978  -3.293 0.720  H6  N82 51 
N82 H7  H7  H 0 1 N N N N N N -47.413 13.977 -3.925 -5.021 -1.333 -0.047 H7  N82 52 
N82 H8  H8  H 0 1 N N N N N N -49.711 11.470 -0.308 -1.436 1.737  1.414  H8  N82 53 
N82 H9  H9  H 0 1 N N N N N N -47.249 11.387 -0.525 -1.244 -0.673 1.867  H9  N82 54 
N82 H10 H10 H 0 1 N N N N N N -47.690 3.663  -1.853 5.660  -2.101 -1.909 H10 N82 55 
N82 H11 H11 H 0 1 N N N N N N -46.399 3.640  -0.604 5.063  -0.844 -3.020 H11 N82 56 
N82 H12 H12 H 0 1 N N N N N N -45.605 1.464  -6.234 8.078  0.495  2.265  H12 N82 57 
N82 H13 H13 H 0 1 N N N N N N -43.456 0.316  -6.766 8.605  2.869  2.670  H13 N82 58 
N82 H14 H14 H 0 1 N N N N N N -41.658 0.301  -5.016 7.782  4.601  1.138  H14 N82 59 
N82 H15 H15 H 0 1 N N N N N N -42.082 1.420  -2.854 6.421  3.987  -0.823 H15 N82 60 
N82 H16 H16 H 0 1 N N N N N N -51.567 10.812 -2.341 -1.437 3.411  0.164  H16 N82 61 
N82 H17 H17 H 0 1 N N N N N N -51.439 11.231 -0.598 -2.262 3.631  1.725  H17 N82 62 
N82 H18 H18 H 0 1 N N N N N N -53.705 12.142 -0.591 -1.796 5.799  0.535  H18 N82 63 
N82 H19 H19 H 0 1 N N N N N N -53.744 10.484 -1.283 -2.860 5.258  -0.785 H19 N82 64 
N82 H20 H20 H 0 1 N N N N N N -52.753 13.680 -2.864 -4.365 6.260  2.974  H20 N82 65 
N82 H21 H21 H 0 1 N N N N N N -54.336 13.859 -3.692 -3.105 5.006  2.903  H21 N82 66 
N82 H22 H22 H 0 1 N N N N N N -54.236 14.004 -1.905 -2.711 6.689  2.478  H22 N82 67 
N82 H23 H23 H 0 1 N N N N N N -55.755 10.768 -2.461 -3.687 7.628  0.355  H23 N82 68 
N82 H24 H24 H 0 1 N N N N N N -55.919 12.377 -1.679 -4.757 6.575  -0.602 H24 N82 69 
N82 H25 H25 H 0 1 N N N N N N -56.019 12.232 -3.467 -5.282 7.163  0.994  H25 N82 70 
N82 H26 H26 H 0 1 N N N N N N -51.072 15.517 -5.968 -8.061 1.360  -1.617 H26 N82 71 
N82 H27 H27 H 0 1 N N N N N N -52.281 14.190 -5.933 -6.932 1.816  -2.916 H27 N82 72 
N82 H28 H28 H 0 1 N N N N N N -51.438 14.574 -8.267 -7.120 -0.462 -3.878 H28 N82 73 
N82 H29 H29 H 0 1 N N N N N N -49.758 14.274 -7.708 -8.248 -0.918 -2.579 H29 N82 74 
N82 H30 H30 H 0 1 N N N N N N -50.967 12.946 -7.672 -8.716 0.319  -3.770 H30 N82 75 
N82 H31 H31 H 0 1 N N N N N N -43.024 14.155 -2.354 -3.951 -5.445 2.215  H31 N82 76 
N82 H32 H32 H 0 1 N N N N N N -46.930 10.054 -2.312 -0.817 -1.273 -0.074 H32 N82 77 
N82 H33 H33 H 0 1 N N N N N N -50.502 15.081 -3.614 -5.760 2.113  -0.481 H33 N82 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N82 CBO CBN SING N N 1  
N82 CBN CBM SING N N 2  
N82 CBF CBE DOUB Y N 3  
N82 CBF CBG SING Y N 4  
N82 CBE CBB SING Y N 5  
N82 OBS CBM DOUB N N 6  
N82 CBM NAE SING N N 7  
N82 CBG CBH DOUB Y N 8  
N82 OBQ CBA DOUB N N 9  
N82 CBB CBA SING N N 10 
N82 CBB CBC DOUB Y N 11 
N82 NAE CAV SING N N 12 
N82 CBA NAF SING N N 13 
N82 CBH CBC SING Y N 14 
N82 CBC CBD SING N N 15 
N82 CAU CAV DOUB Y N 16 
N82 CAU CAN SING Y N 17 
N82 CAV CAW SING Y N 18 
N82 CAP CAQ DOUB Y N 19 
N82 CAP CAO SING Y N 20 
N82 CBK NAG SING N N 21 
N82 CAQ CAR SING Y N 22 
N82 NAG CBL SING N N 23 
N82 NAG CBJ SING N N 24 
N82 NAF CBD SING N N 25 
N82 NAF CAZ SING N N 26 
N82 NAC CAL SING Y N 27 
N82 NAC C4  SING Y N 28 
N82 CAL CAM DOUB Y N 29 
N82 CBD OBR DOUB N N 30 
N82 CAM CAN SING N N 31 
N82 CAM C5  SING Y N 32 
N82 C4  N3  DOUB Y N 33 
N82 C4  C5  SING Y N 34 
N82 N3  C2  SING Y N 35 
N82 CAN CAY DOUB Y N 36 
N82 C5  C6  DOUB Y N 37 
N82 C6  NAD SING N N 38 
N82 C6  N1  SING Y N 39 
N82 C2  N1  DOUB Y N 40 
N82 NAD CAO SING N N 41 
N82 CAO CAT DOUB Y N 42 
N82 CAW OBP SING N N 43 
N82 CAW CAX DOUB Y N 44 
N82 OBP CBI SING N N 45 
N82 CAR CAZ SING N N 46 
N82 CAR CAS DOUB Y N 47 
N82 CBI CBJ SING N N 48 
N82 CAY CAX SING Y N 49 
N82 CAT CAS SING Y N 50 
N82 C2  H1  SING N N 51 
N82 CAL H2  SING N N 52 
N82 CAP H3  SING N N 53 
N82 CAQ H4  SING N N 54 
N82 CAS H5  SING N N 55 
N82 CAT H6  SING N N 56 
N82 CAU H7  SING N N 57 
N82 CAX H8  SING N N 58 
N82 CAY H9  SING N N 59 
N82 CAZ H10 SING N N 60 
N82 CAZ H11 SING N N 61 
N82 CBE H12 SING N N 62 
N82 CBF H13 SING N N 63 
N82 CBG H14 SING N N 64 
N82 CBH H15 SING N N 65 
N82 CBI H16 SING N N 66 
N82 CBI H17 SING N N 67 
N82 CBJ H18 SING N N 68 
N82 CBJ H19 SING N N 69 
N82 CBK H20 SING N N 70 
N82 CBK H21 SING N N 71 
N82 CBK H22 SING N N 72 
N82 CBL H23 SING N N 73 
N82 CBL H24 SING N N 74 
N82 CBL H25 SING N N 75 
N82 CBN H26 SING N N 76 
N82 CBN H27 SING N N 77 
N82 CBO H28 SING N N 78 
N82 CBO H29 SING N N 79 
N82 CBO H30 SING N N 80 
N82 NAC H31 SING N N 81 
N82 NAD H32 SING N N 82 
N82 NAE H33 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N82 InChI            InChI                1.03  "InChI=1S/C34H33N7O4/c1-4-29(42)39-27-17-22(11-14-28(27)45-16-15-40(2)3)26-18-35-31-30(26)32(37-20-36-31)38-23-12-9-21(10-13-23)19-41-33(43)24-7-5-6-8-25(24)34(41)44/h5-14,17-18,20H,4,15-16,19H2,1-3H3,(H,39,42)(H2,35,36,37,38)" 
N82 InChIKey         InChI                1.03  AAWACOFFDRTXNP-UHFFFAOYSA-N                                                                                                                                                                                                         
N82 SMILES_CANONICAL CACTVS               3.385 "CCC(=O)Nc1cc(ccc1OCCN(C)C)c2c[nH]c3ncnc(Nc4ccc(CN5C(=O)c6ccccc6C5=O)cc4)c23"                                                                                                                                                       
N82 SMILES           CACTVS               3.385 "CCC(=O)Nc1cc(ccc1OCCN(C)C)c2c[nH]c3ncnc(Nc4ccc(CN5C(=O)c6ccccc6C5=O)cc4)c23"                                                                                                                                                       
N82 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cc(ccc1OCCN(C)C)c2c[nH]c3c2c(ncn3)Nc4ccc(cc4)CN5C(=O)c6ccccc6C5=O"                                                                                                                                                       
N82 SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cc(ccc1OCCN(C)C)c2c[nH]c3c2c(ncn3)Nc4ccc(cc4)CN5C(=O)c6ccccc6C5=O"                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           N82 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[5-[4-[[4-[[1,3-bis(oxidanylidene)isoindol-2-yl]methyl]phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]-2-[2-(dimethylamino)ethoxy]phenyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N82 "Create component" 2019-11-14 PDBE 
N82 "Initial release"  2020-09-30 RCSB 
N82 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            N82 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CBO 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
