data_VL2
#

_chem_comp.id                                   VL2
_chem_comp.name                                 "4-[2-(9-chloranyl-2',3',4',5',6'-pentamethyl-4-nitro-7-oxidanylidene-spiro[1$l^{4},8-diaza-9$l^{8}-iridabicyclo[4.3.0]nona-1,3,5-triene-9,1'-1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane]-8-yl)ethyl]benzenesulfonamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H28 Cl Ir N4 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2021-05-26
_chem_comp.pdbx_modified_date                   2021-11-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       712.238
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VL2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ONP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VL2  O1   O1   O    0  1  N  N  N  15.685   0.181  18.181  15.685   0.181  18.181  O1   VL2   1  
VL2  C13  C1   C    0  1  N  N  N  19.993   7.261  12.329  19.993   7.261  12.329  C13  VL2   2  
VL2  C14  C2   C    0  1  N  N  N  20.469   7.695  10.976  20.469   7.695  10.976  C14  VL2   3  
VL2  C21  C3   C    0  1  N  N  N  21.502   6.996  10.073  21.502   6.996  10.073  C21  VL2   4  
VL2  C15  C4   C    0  1  N  N  N  19.812   8.977  10.675  19.812   8.977  10.675  C15  VL2   5  
VL2  C20  C5   C    0  1  N  N  N  20.036   9.770   9.359  20.036   9.770   9.359  C20  VL2   6  
VL2  C16  C6   C    0  1  N  N  N  18.926   9.362  11.812  18.926   9.362  11.812  C16  VL2   7  
VL2  C19  C7   C    0  1  N  N  N  18.032  10.588  11.829  18.032  10.588  11.829  C19  VL2   8  
VL2  C22  C8   C    0  1  N  N  N  20.511   6.006  12.973  20.511   6.006  12.973  C22  VL2   9  
VL2  C17  C9   C    0  1  N  N  N  19.002   8.254  12.830  19.002   8.254  12.830  C17  VL2  10  
VL2  C18  C10  C    0  1  N  N  N  18.315   8.249  14.202  18.315   8.249  14.202  C18  VL2  11  
VL2  IR1  IR1  IR   0  0  N  N  N  18.348   7.478  11.071  18.348   7.478  11.071  IR1  VL2  12  
VL2  CL1  CL1  CL   0  0  N  N  N  18.497   5.851   9.351  18.497   5.851   9.351  CL1  VL2  13  
VL2  N1   N1   N    1  1  Y  N  N  16.741   8.012  10.075  16.741   8.012  10.075  N1   VL2  14  
VL2  C1   C11  C    0  1  Y  N  N  16.634   8.974   9.178  16.634   8.974   9.178  C1   VL2  15  
VL2  C2   C12  C    0  1  Y  N  N  15.499   9.359   8.507  15.499   9.359   8.507  C2   VL2  16  
VL2  C5   C13  C    0  1  Y  N  N  15.472   7.307  10.265  15.472   7.307  10.265  C5   VL2  17  
VL2  N4   N2   N    1  1  N  N  N  13.058   9.010   8.000  13.058   9.010   8.000  N4   VL2  18  
VL2  O4   O2   O   -1  1  N  N  N  12.894  10.096   7.449  12.894  10.096   7.449  O4   VL2  19  
VL2  O5   O3   O    0  1  N  N  N  12.103   7.900   8.114  12.103   7.900   8.114  O5   VL2  20  
VL2  C3   C14  C    0  1  Y  N  N  14.327   8.703   8.699  14.327   8.703   8.699  C3   VL2  21  
VL2  C4   C15  C    0  1  Y  N  N  14.233   7.674   9.538  14.233   7.674   9.538  C4   VL2  22  
VL2  S1   S1   S    0  1  N  N  N  15.135   0.028  16.833  15.135   0.028  16.833  S1   VL2  23  
VL2  C10  C16  C    0  1  Y  N  N  15.582   1.391  15.989  15.582   1.391  15.989  C10  VL2  24  
VL2  O2   O4   O    0  1  N  N  N  13.727   0.008  16.769  13.727   0.008  16.769  O2   VL2  25  
VL2  C11  C17  C    0  1  Y  N  N  14.715   2.523  15.740  14.715   2.523  15.740  C11  VL2  26  
VL2  C12  C18  C    0  1  Y  N  N  15.156   3.627  15.099  15.156   3.627  15.099  C12  VL2  27  
VL2  C9   C19  C    0  1  Y  N  N  16.967   1.564  15.515  16.967   1.564  15.515  C9   VL2  28  
VL2  C8   C20  C    0  1  Y  N  N  17.322   2.720  14.819  17.322   2.720  14.819  C8   VL2  29  
VL2  C23  C21  C    0  1  N  N  N  16.970   4.845  12.533  16.970   4.845  12.533  C23  VL2  30  
VL2  C24  C22  C    0  1  N  N  N  16.844   4.930  13.908  16.844   4.930  13.908  C24  VL2  31  
VL2  N3   N3   N    0  1  N  N  N  15.724  -1.160  16.109  15.724  -1.160  16.109  N3   VL2  32  
VL2  C7   C23  C    0  1  Y  N  N  16.432   3.745  14.601  16.432   3.745  14.601  C7   VL2  33  
VL2  N2   N4   N    0  1  N  N  N  16.902   6.120  11.737  16.902   6.120  11.737  N2   VL2  34  
VL2  C6   C24  C    0  1  N  N  N  15.629   6.248  11.239  15.629   6.248  11.239  C6   VL2  35  
VL2  O3   O5   O    0  1  N  N  N  14.704   5.533  11.579  14.704   5.533  11.579  O3   VL2  36  
VL2  H1   H1   H    0  1  N  N  N  21.627   7.572   9.144  21.627   7.572   9.144  H1   VL2  37  
VL2  H2   H2   H    0  1  N  N  N  22.466   6.934  10.599  22.466   6.934  10.599  H2   VL2  38  
VL2  H3   H3   H    0  1  N  N  N  21.151   5.982   9.831  21.151   5.982   9.831  H3   VL2  39  
VL2  H4   H4   H    0  1  N  N  N  19.433  10.690   9.378  19.434  10.690   9.378  H4   VL2  40  
VL2  H5   H5   H    0  1  N  N  N  21.100  10.031   9.265  21.101  10.031   9.265  H5   VL2  41  
VL2  H6   H6   H    0  1  N  N  N  19.733   9.151   8.502  19.733   9.151   8.502  H6   VL2  42  
VL2  H7   H7   H    0  1  N  N  N  17.489  10.633  12.784  17.489  10.633  12.784  H7   VL2  43  
VL2  H8   H8   H    0  1  N  N  N  18.648  11.492  11.715  18.648  11.492  11.715  H8   VL2  44  
VL2  H9   H9   H    0  1  N  N  N  17.312  10.528  11.000  17.312  10.528  11.000  H9   VL2  45  
VL2  H10  H10  H    0  1  N  N  N  20.035   5.874  13.956  20.035   5.874  13.956  H10  VL2  46  
VL2  H11  H11  H    0  1  N  N  N  20.277   5.142  12.333  20.277   5.142  12.333  H11  VL2  47  
VL2  H12  H12  H    0  1  N  N  N  21.601   6.083  13.101  21.601   6.083  13.101  H12  VL2  48  
VL2  H13  H13  H    0  1  N  N  N  17.636   9.111  14.276  17.636   9.111  14.276  H13  VL2  49  
VL2  H14  H14  H    0  1  N  N  N  17.740   7.319  14.321  17.740   7.319  14.321  H14  VL2  50  
VL2  H15  H15  H    0  1  N  N  N  19.076   8.313  14.993  19.076   8.313  14.993  H15  VL2  51  
VL2  H16  H16  H    0  1  N  N  N  17.538   9.518   8.946  17.538   9.518   8.946  H16  VL2  52  
VL2  H17  H17  H    0  1  N  N  N  15.540  10.192   7.820  15.540  10.191   7.820  H17  VL2  53  
VL2  H18  H18  H    0  1  N  N  N  13.307   7.137   9.681  13.307   7.137   9.681  H18  VL2  54  
VL2  H19  H19  H    0  1  N  N  N  13.689   2.484  16.075  13.689   2.484  16.075  H19  VL2  55  
VL2  H20  H20  H    0  1  N  N  N  14.475   4.455  14.972  14.475   4.455  14.972  H20  VL2  56  
VL2  H21  H21  H    0  1  N  N  N  17.705   0.798  15.706  17.705   0.799  15.706  H21  VL2  57  
VL2  H22  H22  H    0  1  N  N  N  18.329   2.813  14.439  18.329   2.813  14.439  H22  VL2  58  
VL2  H23  H23  H    0  1  N  N  N  17.944   4.379  12.322  17.944   4.379  12.322  H23  VL2  59  
VL2  H24  H24  H    0  1  N  N  N  16.164   4.190  12.171  16.164   4.190  12.171  H24  VL2  60  
VL2  H25  H25  H    0  1  N  N  N  17.823   5.227  14.313  17.823   5.227  14.313  H25  VL2  61  
VL2  H26  H26  H    0  1  N  N  N  16.104   5.715  14.125  16.104   5.715  14.125  H26  VL2  62  
VL2  H27  H27  H    0  1  N  N  N  15.322  -1.227  15.196  15.322  -1.227  15.196  H27  VL2  63  
VL2  H28  H28  H    0  1  N  N  N  16.714  -1.045  16.030  16.714  -1.044  16.030  H28  VL2  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VL2  O1   S1   DOUB  N  N   1  
VL2  C13  C14  SING  N  N   2  
VL2  C13  C22  SING  N  N   3  
VL2  C13  C17  SING  N  N   4  
VL2  C13  IR1  SING  N  N   5  
VL2  C14  C21  SING  N  N   6  
VL2  C14  C15  SING  N  N   7  
VL2  C14  IR1  SING  N  N   8  
VL2  C15  C20  SING  N  N   9  
VL2  C15  C16  SING  N  N  10  
VL2  C15  IR1  SING  N  N  11  
VL2  C16  C19  SING  N  N  12  
VL2  C16  C17  SING  N  N  13  
VL2  C16  IR1  SING  N  N  14  
VL2  C17  C18  SING  N  N  15  
VL2  C17  IR1  SING  N  N  16  
VL2  IR1  CL1  SING  N  N  17  
VL2  IR1  N1   SING  N  N  18  
VL2  IR1  N2   SING  N  N  19  
VL2  N1   C1   DOUB  Y  N  20  
VL2  N1   C5   SING  Y  N  21  
VL2  C1   C2   SING  Y  N  22  
VL2  C2   C3   DOUB  Y  N  23  
VL2  C5   C4   DOUB  Y  N  24  
VL2  C5   C6   SING  N  N  25  
VL2  N4   O4   SING  N  N  26  
VL2  N4   O5   DOUB  N  N  27  
VL2  N4   C3   SING  N  N  28  
VL2  C3   C4   SING  Y  N  29  
VL2  S1   C10  SING  N  N  30  
VL2  S1   O2   DOUB  N  N  31  
VL2  S1   N3   SING  N  N  32  
VL2  C10  C11  DOUB  Y  N  33  
VL2  C10  C9   SING  Y  N  34  
VL2  C11  C12  SING  Y  N  35  
VL2  C12  C7   DOUB  Y  N  36  
VL2  C9   C8   DOUB  Y  N  37  
VL2  C8   C7   SING  Y  N  38  
VL2  C23  C24  SING  N  N  39  
VL2  C23  N2   SING  N  N  40  
VL2  C24  C7   SING  N  N  41  
VL2  N2   C6   SING  N  N  42  
VL2  C6   O3   DOUB  N  N  43  
VL2  C21  H1   SING  N  N  44  
VL2  C21  H2   SING  N  N  45  
VL2  C21  H3   SING  N  N  46  
VL2  C20  H4   SING  N  N  47  
VL2  C20  H5   SING  N  N  48  
VL2  C20  H6   SING  N  N  49  
VL2  C19  H7   SING  N  N  50  
VL2  C19  H8   SING  N  N  51  
VL2  C19  H9   SING  N  N  52  
VL2  C22  H10  SING  N  N  53  
VL2  C22  H11  SING  N  N  54  
VL2  C22  H12  SING  N  N  55  
VL2  C18  H13  SING  N  N  56  
VL2  C18  H14  SING  N  N  57  
VL2  C18  H15  SING  N  N  58  
VL2  C1   H16  SING  N  N  59  
VL2  C2   H17  SING  N  N  60  
VL2  C4   H18  SING  N  N  61  
VL2  C11  H19  SING  N  N  62  
VL2  C12  H20  SING  N  N  63  
VL2  C9   H21  SING  N  N  64  
VL2  C8   H22  SING  N  N  65  
VL2  C23  H23  SING  N  N  66  
VL2  C23  H24  SING  N  N  67  
VL2  C24  H25  SING  N  N  68  
VL2  C24  H26  SING  N  N  69  
VL2  N3   H27  SING  N  N  70  
VL2  N3   H28  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VL2  InChI             InChI                 1.03   "InChI=1S/C14H14N4O5S.C10H15.ClH.Ir/c15-24(22,23)12-3-1-10(2-4-12)5-7-17-14(19)13-9-11(18(20)21)6-8-16-13;1-6-7(2)9(4)10(5)8(6)3;;/h1-4,6,8-9H,5,7H2,(H3,15,17,19,22,23);1-5H3;1H;/q;;;+3/p-2"  
VL2  InChIKey          InChI                 1.03   WUOZRCRVUWNRSO-UHFFFAOYSA-L  
VL2  SMILES_CANONICAL  CACTVS                3.385  "CC1C(C)C(C)C(C)C1C.N[S](=O)(=O)c2ccc(CCN3[Ir](Cl)[n+]4ccc(cc4C3=O)[N](=O)=O)cc2"  
VL2  SMILES            CACTVS                3.385  "CC1C(C)C(C)C(C)C1C.N[S](=O)(=O)c2ccc(CCN3[Ir](Cl)[n+]4ccc(cc4C3=O)[N](=O)=O)cc2"  
VL2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC12C3([Ir]1456(C2(C4(C53C)C)C)([n+]7ccc(cc7C(=O)N6CCc8ccc(cc8)S(=O)(=O)N)N(=O)=O)Cl)C"  
VL2  SMILES            "OpenEye OEToolkits"  2.0.7  "CC12C3([Ir]1456(C2(C4(C53C)C)C)([n+]7ccc(cc7C(=O)N6CCc8ccc(cc8)S(=O)(=O)N)N(=O)=O)Cl)C"  
#
_pdbx_chem_comp_identifier.comp_id          VL2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[2-(1-chloranyl-2,3,4,5,6-pentamethyl-4'-nitro-7'-oxidanylidene-spiro[1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane-1,9'-8-aza-1-azonia-9$l^{8}-iridabicyclo[4.3.0]nona-1,3,5-triene]-8'-yl)ethyl]benzenesulfonamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VL2  "Create component"  2021-05-26  PDBE  
VL2  "Initial release"   2021-12-01  RCSB  
##
