data_Y32
# 
_chem_comp.id                                    Y32 
_chem_comp.name                                  "(2~{S})-5-azanyl-5-oxidanylidene-2-[(3-phenoxyphenyl)carbonylamino]pentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H18 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-16 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        342.346 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y32 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R5B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y32 N1  N1  N 0 1 N N N N N N 5.590  50.450 15.243 1.706  -0.130 0.467  N1  Y32 1  
Y32 C4  C1  C 0 1 N N N N N N 7.259  51.020 16.891 4.062  -0.505 -0.074 C4  Y32 2  
Y32 C5  C2  C 0 1 N N N N N N 7.346  51.995 14.500 2.688  -2.295 0.955  C5  Y32 3  
Y32 C6  C3  C 0 1 N N N N N N 7.836  52.196 17.654 4.073  0.596  -1.137 C6  Y32 4  
Y32 C7  C4  C 0 1 N N N N N N 6.949  52.607 18.795 5.446  1.213  -1.207 C7  Y32 5  
Y32 C8  C5  C 0 1 Y N N N N N 2.619  49.839 13.363 -1.917 0.649  0.285  C8  Y32 6  
Y32 C10 C6  C 0 1 Y N N N N N 2.135  47.504 13.035 -2.380 2.670  1.498  C10 Y32 7  
Y32 C13 C7  C 0 1 Y N N N N N -0.194 50.270 12.984 -4.543 0.370  -0.241 C13 Y32 8  
Y32 C15 C8  C 0 1 Y N N N N N -1.449 52.250 12.629 -4.942 -1.994 -0.246 C15 Y32 9  
Y32 C17 C9  C 0 1 Y N N N N N -1.210 51.364 14.821 -5.399 -0.698 -2.209 C17 Y32 10 
Y32 C1  C10 C 0 1 Y N N N N N 3.866  49.500 13.869 -0.567 0.765  0.618  C1  Y32 11 
Y32 C2  C11 C 0 1 N N N N N N 4.759  50.639 14.242 0.403  -0.245 0.144  C2  Y32 12 
Y32 O1  O1  O 0 1 N N N N N N 4.729  51.703 13.637 0.025  -1.179 -0.536 O1  Y32 13 
Y32 C3  C12 C 0 1 N N S N N N 6.464  51.518 15.683 2.668  -1.131 -0.002 C3  Y32 14 
Y32 O2  O2  O 0 1 N N N N N N 7.474  53.246 14.336 3.501  -3.338 0.725  O2  Y32 15 
Y32 O3  O3  O 0 1 N N N N N N 7.902  51.081 13.789 1.973  -2.289 1.928  O3  Y32 16 
Y32 N2  N2  N 0 1 N N N N N N 6.191  53.693 18.639 5.693  2.210  -2.079 N2  Y32 17 
Y32 O4  O4  O 0 1 N N N N N N 7.055  51.995 19.853 6.329  0.811  -0.479 O4  Y32 18 
Y32 C9  C13 C 0 1 Y N N N N N 1.752  48.834 12.994 -2.819 1.603  0.727  C9  Y32 19 
Y32 C11 C14 C 0 1 Y N N N N N 3.397  47.183 13.479 -1.044 2.780  1.838  C11 Y32 20 
Y32 C12 C15 C 0 1 Y N N N N N 4.258  48.172 13.916 -0.136 1.839  1.398  C12 Y32 21 
Y32 O5  O5  O 0 1 N N N N N N 0.503  49.175 12.491 -4.135 1.493  0.405  O5  Y32 22 
Y32 C14 C16 C 0 1 Y N N N N N -0.692 51.205 12.117 -4.522 -0.854 0.412  C14 Y32 23 
Y32 C16 C17 C 0 1 Y N N N N N -1.742 52.312 13.976 -5.383 -1.915 -1.555 C16 Y32 24 
Y32 C18 C18 C 0 1 Y N N N N N -0.469 50.313 14.328 -4.986 0.446  -1.554 C18 Y32 25 
Y32 H1  H1  H 0 1 N N N N N N 5.619  49.563 15.704 2.009  0.617  1.006  H1  Y32 26 
Y32 H2  H2  H 0 1 N N N N N N 6.594  50.447 17.554 4.791  -1.271 -0.337 H2  Y32 27 
Y32 H3  H3  H 0 1 N N N N N N 8.079  50.373 16.546 4.318  -0.077 0.895  H3  Y32 28 
Y32 H4  H4  H 0 1 N N N N N N 8.822  51.913 18.052 3.817  0.168  -2.106 H4  Y32 29 
Y32 H5  H5  H 0 1 N N N N N N 7.949  53.047 16.966 3.343  1.362  -0.873 H5  Y32 30 
Y32 H6  H6  H 0 1 N N N N N N 2.333  50.875 13.260 -2.257 -0.179 -0.319 H6  Y32 31 
Y32 H7  H7  H 0 1 N N N N N N 1.452  46.728 12.722 -3.086 3.411  1.845  H7  Y32 32 
Y32 H8  H8  H 0 1 N N N N N N -1.812 53.022 11.967 -4.930 -2.946 0.263  H8  Y32 33 
Y32 H9  H9  H 0 1 N N N N N N -1.376 51.446 15.885 -5.744 -0.639 -3.231 H9  Y32 34 
Y32 H10 H10 H 0 1 N N N N N N 5.851  52.371 16.009 2.375  -1.480 -0.993 H10 Y32 35 
Y32 H11 H11 H 0 1 N N N N N N 8.050  53.412 13.599 3.479  -4.061 1.367  H11 Y32 36 
Y32 H12 H12 H 0 1 N N N N N N 5.667  54.052 19.411 4.986  2.531  -2.661 H12 Y32 37 
Y32 H13 H13 H 0 1 N N N N N N 6.146  54.148 17.750 6.577  2.607  -2.124 H13 Y32 38 
Y32 H14 H14 H 0 1 N N N N N N 3.717  46.152 13.486 -0.710 3.606  2.449  H14 Y32 39 
Y32 H15 H15 H 0 1 N N N N N N 5.235  47.910 14.294 0.908  1.933  1.658  H15 Y32 40 
Y32 H16 H16 H 0 1 N N N N N N -0.500 51.131 11.057 -4.177 -0.916 1.433  H16 Y32 41 
Y32 H17 H17 H 0 1 N N N N N N -2.380 53.093 14.362 -5.715 -2.807 -2.066 H17 Y32 42 
Y32 H18 H18 H 0 1 N N N N N N -0.111 49.536 14.987 -5.007 1.398  -2.063 H18 Y32 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y32 C14 C15 DOUB Y N 1  
Y32 C14 C13 SING Y N 2  
Y32 O5  C13 SING N N 3  
Y32 O5  C9  SING N N 4  
Y32 C15 C16 SING Y N 5  
Y32 C13 C18 DOUB Y N 6  
Y32 C9  C10 DOUB Y N 7  
Y32 C9  C8  SING Y N 8  
Y32 C10 C11 SING Y N 9  
Y32 C8  C1  DOUB Y N 10 
Y32 C11 C12 DOUB Y N 11 
Y32 O1  C2  DOUB N N 12 
Y32 O3  C5  DOUB N N 13 
Y32 C1  C12 SING Y N 14 
Y32 C1  C2  SING N N 15 
Y32 C16 C17 DOUB Y N 16 
Y32 C2  N1  SING N N 17 
Y32 C18 C17 SING Y N 18 
Y32 O2  C5  SING N N 19 
Y32 C5  C3  SING N N 20 
Y32 N1  C3  SING N N 21 
Y32 C3  C4  SING N N 22 
Y32 C4  C6  SING N N 23 
Y32 C6  C7  SING N N 24 
Y32 N2  C7  SING N N 25 
Y32 C7  O4  DOUB N N 26 
Y32 N1  H1  SING N N 27 
Y32 C4  H2  SING N N 28 
Y32 C4  H3  SING N N 29 
Y32 C6  H4  SING N N 30 
Y32 C6  H5  SING N N 31 
Y32 C8  H6  SING N N 32 
Y32 C10 H7  SING N N 33 
Y32 C15 H8  SING N N 34 
Y32 C17 H9  SING N N 35 
Y32 C3  H10 SING N N 36 
Y32 O2  H11 SING N N 37 
Y32 N2  H12 SING N N 38 
Y32 N2  H13 SING N N 39 
Y32 C11 H14 SING N N 40 
Y32 C12 H15 SING N N 41 
Y32 C14 H16 SING N N 42 
Y32 C16 H17 SING N N 43 
Y32 C18 H18 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y32 InChI            InChI                1.06  "InChI=1S/C18H18N2O5/c19-16(21)10-9-15(18(23)24)20-17(22)12-5-4-8-14(11-12)25-13-6-2-1-3-7-13/h1-8,11,15H,9-10H2,(H2,19,21)(H,20,22)(H,23,24)/t15-/m0/s1" 
Y32 InChIKey         InChI                1.06  MLMXIRRYCOORCS-HNNXBMFYSA-N                                                                                                                               
Y32 SMILES_CANONICAL CACTVS               3.385 "NC(=O)CC[C@H](NC(=O)c1cccc(Oc2ccccc2)c1)C(O)=O"                                                                                                          
Y32 SMILES           CACTVS               3.385 "NC(=O)CC[CH](NC(=O)c1cccc(Oc2ccccc2)c1)C(O)=O"                                                                                                           
Y32 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2cccc(c2)C(=O)N[C@@H](CCC(=O)N)C(=O)O"                                                                                                       
Y32 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2cccc(c2)C(=O)NC(CCC(=O)N)C(=O)O"                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           Y32 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-5-azanyl-5-oxidanylidene-2-[(3-phenoxyphenyl)carbonylamino]pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y32 "Create component" 2023-11-16 PDBE 
Y32 "Initial release"  2024-01-17 RCSB 
# 
