data_YD2
# 
_chem_comp.id                                    YD2 
_chem_comp.name                                  "3-(4-fluorophenyl)-1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H19 F N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-30 
_chem_comp.pdbx_modified_date                    2024-11-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.406 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YD2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8X68 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YD2 C10 C1  C 0 1 N N N N N N 3.369  -5.461 84.699 5.108  -0.424 -1.062 C10 YD2 1  
YD2 C13 C2  C 0 1 N N N N N N 5.762  -5.677 83.059 4.900  -2.309 1.099  C13 YD2 2  
YD2 C20 C3  C 0 1 N N N N N N -2.328 -2.820 86.348 -2.111 1.116  0.011  C20 YD2 3  
YD2 C21 C4  C 0 1 N N N N N N 0.108  -5.863 83.310 2.167  3.703  0.140  C21 YD2 4  
YD2 C24 C5  C 0 1 N N N N N N 0.718  -0.018 86.105 0.084  -2.503 -0.159 C24 YD2 5  
YD2 C26 C6  C 0 1 Y N N N N N -3.664 -1.673 89.208 -4.822 0.206  1.086  C26 YD2 6  
YD2 C28 C7  C 0 1 Y N N N N N -5.863 -0.709 89.325 -6.868 -0.330 -0.039 C28 YD2 7  
YD2 C01 C8  C 0 1 Y N N N N N 0.881  -2.410 84.733 1.460  -0.025 -0.038 C01 YD2 8  
YD2 C02 C9  C 0 1 Y N N N N N -0.237 -2.161 85.508 0.075  -0.039 -0.041 C02 YD2 9  
YD2 C03 C10 C 0 1 Y N N N N N -1.236 -3.088 85.578 -0.636 1.172  0.015  C03 YD2 10 
YD2 C04 C11 C 0 1 Y N N N N N -1.124 -4.293 84.865 0.047  2.385  0.074  C04 YD2 11 
YD2 C05 C12 C 0 1 Y N N N N N -0.008 -4.540 84.083 1.424  2.393  0.077  C05 YD2 12 
YD2 C06 C13 C 0 1 Y N N N N N 0.993  -3.587 84.029 2.137  1.192  0.020  C06 YD2 13 
YD2 C07 C14 C 0 1 N N N N N N 2.268  -3.740 83.210 3.617  1.212  0.023  C07 YD2 14 
YD2 C08 C15 C 0 1 N N N N N N 3.369  -4.746 83.569 4.369  -0.051 0.038  C08 YD2 15 
YD2 O09 O1  O 0 1 N N N N N N 2.420  -3.000 82.286 4.211  2.273  0.014  O09 YD2 16 
YD2 C11 C16 C 0 1 N N N N N N 4.392  -6.574 84.956 5.886  -1.706 -1.113 C11 YD2 17 
YD2 C12 C17 C 0 1 N N N N N N 5.227  -6.938 83.734 6.201  -2.215 0.292  C12 YD2 18 
YD2 C14 C18 C 0 1 N N N N N N 4.562  -4.851 82.618 4.332  -0.913 1.225  C14 YD2 19 
YD2 O15 O2  O 0 1 N N N N N N 2.703  -4.985 85.835 5.128  0.386  -2.130 O15 YD2 20 
YD2 O16 O3  O 0 1 N N N N N N 4.558  -4.309 81.558 3.871  -0.514 2.274  O16 YD2 21 
YD2 N17 N1  N 0 1 N N N N N N -0.335 -1.016 86.173 -0.637 -1.230 -0.099 N17 YD2 22 
YD2 C18 C19 C 0 1 N N N N N N -1.420 -0.767 86.936 -1.981 -1.225 -0.093 C18 YD2 23 
YD2 N19 N2  N 0 1 N N N N N N -2.420 -1.677 87.028 -2.705 -0.096 -0.041 N19 YD2 24 
YD2 O22 O4  O 0 1 N N N N N N -3.201 -3.614 86.425 -2.774 2.134  0.059  O22 YD2 25 
YD2 O23 O5  O 0 1 N N N N N N -1.484 0.256  87.526 -2.566 -2.290 -0.139 O23 YD2 26 
YD2 C25 C20 C 0 1 Y N N N N N -3.595 -1.362 87.844 -4.104 -0.176 -0.040 C25 YD2 27 
YD2 C27 C21 C 0 1 Y N N N N N -4.797 -1.349 89.956 -6.200 0.126  1.085  C27 YD2 28 
YD2 C29 C22 C 0 1 Y N N N N N -5.786 -0.408 87.984 -6.154 -0.717 -1.161 C29 YD2 29 
YD2 C30 C23 C 0 1 Y N N N N N -4.657 -0.726 87.236 -4.775 -0.638 -1.164 C30 YD2 30 
YD2 F31 F1  F 0 1 N N N N N N -7.009 -0.362 89.993 -8.217 -0.408 -0.038 F31 YD2 31 
YD2 H2  H2  H 0 1 N N N N N N 6.373  -5.949 82.185 4.185  -2.945 0.577  H2  YD2 32 
YD2 H3  H3  H 0 1 N N N N N N 6.374  -5.101 83.769 5.106  -2.719 2.088  H3  YD2 33 
YD2 H4  H4  H 0 1 N N N N N N 0.604  -6.615 83.942 2.444  3.914  1.173  H4  YD2 34 
YD2 H5  H5  H 0 1 N N N N N N -0.897 -6.218 83.038 3.066  3.641  -0.473 H5  YD2 35 
YD2 H6  H6  H 0 1 N N N N N N 0.700  -5.703 82.397 1.526  4.502  -0.235 H6  YD2 36 
YD2 H7  H7  H 0 1 N N N N N N 0.442  0.849  86.723 0.240  -2.880 0.852  H7  YD2 37 
YD2 H8  H8  H 0 1 N N N N N N 1.658  -0.451 86.479 -0.501 -3.225 -0.729 H8  YD2 38 
YD2 H9  H9  H 0 1 N N N N N N 0.852  0.303  85.062 1.048  -2.353 -0.644 H9  YD2 39 
YD2 H10 H10 H 0 1 N N N N N N -2.832 -2.169 89.686 -4.301 0.561  1.963  H10 YD2 40 
YD2 H11 H11 H 0 1 N N N N N N 1.671  -1.676 84.680 2.012  -0.952 -0.082 H11 YD2 41 
YD2 H12 H12 H 0 1 N N N N N N -1.911 -5.030 84.927 -0.501 3.315  0.117  H12 YD2 42 
YD2 H14 H14 H 0 1 N N N N N N 3.851  -7.473 85.286 5.302  -2.458 -1.644 H14 YD2 43 
YD2 H15 H15 H 0 1 N N N N N N 5.072  -6.242 85.754 6.820  -1.535 -1.649 H15 YD2 44 
YD2 H16 H16 H 0 1 N N N N N N 4.601  -7.493 83.020 6.883  -1.519 0.781  H16 YD2 45 
YD2 H17 H17 H 0 1 N N N N N N 6.073  -7.568 84.048 6.665  -3.200 0.233  H17 YD2 46 
YD2 H18 H18 H 0 1 N N N N N N 2.801  -5.609 86.545 4.583  1.184  -2.086 H18 YD2 47 
YD2 H19 H19 H 0 1 N N N N N N -4.847 -1.590 91.007 -6.758 0.418  1.963  H19 YD2 48 
YD2 H20 H20 H 0 1 N N N N N N -6.618 0.085  87.503 -6.676 -1.072 -2.037 H20 YD2 49 
YD2 H21 H21 H 0 1 N N N N N N -4.612 -0.476 86.186 -4.219 -0.935 -2.041 H21 YD2 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YD2 O16 C14 DOUB N N 1  
YD2 O09 C07 DOUB N N 2  
YD2 C14 C13 SING N N 3  
YD2 C14 C08 SING N N 4  
YD2 C13 C12 SING N N 5  
YD2 C07 C08 SING N N 6  
YD2 C07 C06 SING N N 7  
YD2 C21 C05 SING N N 8  
YD2 C08 C10 DOUB N N 9  
YD2 C12 C11 SING N N 10 
YD2 C06 C05 DOUB Y N 11 
YD2 C06 C01 SING Y N 12 
YD2 C05 C04 SING Y N 13 
YD2 C10 C11 SING N N 14 
YD2 C10 O15 SING N N 15 
YD2 C01 C02 DOUB Y N 16 
YD2 C04 C03 DOUB Y N 17 
YD2 C02 C03 SING Y N 18 
YD2 C02 N17 SING N N 19 
YD2 C03 C20 SING N N 20 
YD2 C24 N17 SING N N 21 
YD2 N17 C18 SING N N 22 
YD2 C20 O22 DOUB N N 23 
YD2 C20 N19 SING N N 24 
YD2 C18 N19 SING N N 25 
YD2 C18 O23 DOUB N N 26 
YD2 N19 C25 SING N N 27 
YD2 C30 C25 DOUB Y N 28 
YD2 C30 C29 SING Y N 29 
YD2 C25 C26 SING Y N 30 
YD2 C29 C28 DOUB Y N 31 
YD2 C26 C27 DOUB Y N 32 
YD2 C28 C27 SING Y N 33 
YD2 C28 F31 SING N N 34 
YD2 C13 H2  SING N N 35 
YD2 C13 H3  SING N N 36 
YD2 C21 H4  SING N N 37 
YD2 C21 H5  SING N N 38 
YD2 C21 H6  SING N N 39 
YD2 C24 H7  SING N N 40 
YD2 C24 H8  SING N N 41 
YD2 C24 H9  SING N N 42 
YD2 C26 H10 SING N N 43 
YD2 C01 H11 SING N N 44 
YD2 C04 H12 SING N N 45 
YD2 C11 H14 SING N N 46 
YD2 C11 H15 SING N N 47 
YD2 C12 H16 SING N N 48 
YD2 C12 H17 SING N N 49 
YD2 O15 H18 SING N N 50 
YD2 C27 H19 SING N N 51 
YD2 C29 H20 SING N N 52 
YD2 C30 H21 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YD2 InChI            InChI                1.06  "InChI=1S/C23H19FN2O5/c1-12-10-16-17(11-15(12)21(29)20-18(27)4-3-5-19(20)28)25(2)23(31)26(22(16)30)14-8-6-13(24)7-9-14/h6-11,27H,3-5H2,1-2H3" 
YD2 InChIKey         InChI                1.06  UTZSWCGZCJFBSU-UHFFFAOYSA-N                                                                                                                   
YD2 SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(C(=O)c2cc(C)c(cc12)C(=O)C3=C(O)CCCC3=O)c4ccc(F)cc4"                                                                                
YD2 SMILES           CACTVS               3.385 "CN1C(=O)N(C(=O)c2cc(C)c(cc12)C(=O)C3=C(O)CCCC3=O)c4ccc(F)cc4"                                                                                
YD2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C(=O)C3=C(CCCC3=O)O)N(C(=O)N(C2=O)c4ccc(cc4)F)C"                                                                                  
YD2 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C(=O)C3=C(CCCC3=O)O)N(C(=O)N(C2=O)c4ccc(cc4)F)C"                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           YD2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-(4-fluorophenyl)-1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YD2 "Create component" 2023-11-30 PDBJ 
YD2 "Initial release"  2024-11-20 RCSB 
# 
