data_YQ2
# 
_chem_comp.id                                    YQ2 
_chem_comp.name                                  "2-[[(1~{R})-1-(7-methyl-4-oxidanylidene-2-piperidin-1-yl-3~{H}-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H27 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2023-12-08 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        407.485 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YQ2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V8V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YQ2 C13 C1  C 0 1 N N N N N N 10.876 -19.244 -17.119 3.536  3.430  -0.637 C13 YQ2 1  
YQ2 C15 C2  C 0 1 N N N N N N 11.576 -17.079 -16.176 5.742  2.253  -0.618 C15 YQ2 2  
YQ2 C17 C3  C 0 1 Y N N N N N 7.336  -15.966 -23.185 -3.111 1.118  0.083  C17 YQ2 3  
YQ2 C20 C4  C 0 1 Y N N N N N 9.034  -14.022 -24.261 -4.623 3.325  0.832  C20 YQ2 4  
YQ2 C22 C5  C 0 1 Y N N N N N 7.591  -14.781 -22.510 -2.494 2.340  0.320  C22 YQ2 5  
YQ2 C11 C6  C 0 1 N N N N N N 6.178  -18.831 -21.130 -0.711 0.618  -2.000 C11 YQ2 6  
YQ2 C12 C7  C 0 1 N N N N N N 9.407  -18.786 -17.070 2.991  2.456  0.413  C12 YQ2 7  
YQ2 C18 C8  C 0 1 Y N N N N N 7.938  -16.177 -24.441 -4.504 1.005  0.218  C18 YQ2 8  
YQ2 C19 C9  C 0 1 Y N N N N N 8.785  -15.188 -24.950 -5.253 2.123  0.596  C19 YQ2 9  
YQ2 C23 C10 C 0 1 N N N N N N 7.762  -17.376 -25.245 -5.172 -0.283 -0.037 C23 YQ2 10 
YQ2 C1  C11 C 0 1 Y N N N N N 4.258  -14.826 -19.630 -0.259 -3.541 -0.244 C1  YQ2 11 
YQ2 C10 C12 C 0 1 N N R N N N 6.587  -17.362 -21.236 -0.921 0.166  -0.553 C10 YQ2 12 
YQ2 C14 C13 C 0 1 N N N N N N 11.766 -18.586 -16.062 5.044  3.602  -0.434 C14 YQ2 13 
YQ2 C16 C14 C 0 1 N N N N N N 10.117 -16.737 -15.962 5.222  1.266  0.433  C16 YQ2 14 
YQ2 C2  C15 C 0 1 Y N N N N N 4.813  -15.709 -20.551 -0.929 -2.338 -0.455 C2  YQ2 15 
YQ2 C21 C16 C 0 1 Y N N N N N 8.429  -13.828 -23.036 -3.249 3.434  0.693  C21 YQ2 16 
YQ2 C3  C17 C 0 1 Y N N N N N 5.949  -16.411 -20.229 -0.229 -1.155 -0.334 C3  YQ2 17 
YQ2 C4  C18 C 0 1 Y N N N N N 6.537  -16.197 -18.962 1.130  -1.194 -0.004 C4  YQ2 18 
YQ2 C5  C19 C 0 1 Y N N N N N 4.832  -14.643 -18.415 1.064  -3.525 0.087  C5  YQ2 19 
YQ2 C6  C20 C 0 1 N N N N N N 8.205  -16.632 -17.332 3.121  0.009  0.188  C6  YQ2 20 
YQ2 C7  C21 C 0 1 N N N N N N 7.660  -15.779 -16.452 3.923  -1.269 0.115  C7  YQ2 21 
YQ2 C8  C22 C 0 1 N N N N N N 6.520  -15.096 -16.817 3.038  -2.398 0.598  C8  YQ2 22 
YQ2 C9  C23 C 0 1 N N N N N N 3.007  -14.080 -20.002 -0.993 -4.850 -0.374 C9  YQ2 23 
YQ2 N1  N1  N 1 1 Y N N N N N 5.970  -15.327 -18.087 1.727  -2.377 0.218  N1  YQ2 24 
YQ2 N2  N2  N 0 1 N N N N N N 7.654  -16.830 -18.549 1.822  -0.030 0.107  N2  YQ2 25 
YQ2 N3  N3  N 0 1 N N N N N N 9.320  -17.323 -17.049 3.757  1.204  0.339  N3  YQ2 26 
YQ2 N4  N4  N 0 1 N N N N N N 6.475  -16.922 -22.615 -2.354 0.016  -0.292 N4  YQ2 27 
YQ2 O1  O1  O 0 1 N N N N N N 5.918  -14.296 -16.110 3.477  -3.288 1.296  O1  YQ2 28 
YQ2 O2  O2  O 0 1 N N N N N N 7.164  -18.394 -24.831 -6.517 -0.360 -0.021 O2  YQ2 29 
YQ2 O3  O3  O 0 1 N N N N N N 8.242  -17.429 -26.403 -4.509 -1.277 -0.261 O3  YQ2 30 
YQ2 H1  H1  H 0 1 N N N N N N 10.905 -20.333 -16.967 3.347  3.033  -1.634 H1  YQ2 31 
YQ2 H2  H2  H 0 1 N N N N N N 11.281 -19.002 -18.113 3.042  4.395  -0.529 H2  YQ2 32 
YQ2 H3  H3  H 0 1 N N N N N N 12.187 -16.574 -15.413 5.532  1.867  -1.615 H3  YQ2 33 
YQ2 H4  H4  H 0 1 N N N N N N 11.888 -16.745 -17.176 6.818  2.380  -0.496 H4  YQ2 34 
YQ2 H5  H5  H 0 1 N N N N N N 9.692  -13.271 -24.673 -5.204 4.187  1.124  H5  YQ2 35 
YQ2 H6  H6  H 0 1 N N N N N N 7.122  -14.605 -21.553 -1.424 2.434  0.213  H6  YQ2 36 
YQ2 H7  H7  H 0 1 N N N N N N 6.264  -19.162 -20.084 0.356  0.729  -2.194 H7  YQ2 37 
YQ2 H8  H8  H 0 1 N N N N N N 5.137  -18.947 -21.467 -1.128 -0.128 -2.677 H8  YQ2 38 
YQ2 H9  H9  H 0 1 N N N N N N 6.838  -19.442 -21.763 -1.211 1.573  -2.159 H9  YQ2 39 
YQ2 H10 H10 H 0 1 N N N N N N 8.881  -19.166 -17.958 3.099  2.893  1.406  H10 YQ2 40 
YQ2 H11 H11 H 0 1 N N N N N N 8.933  -19.189 -16.163 1.940  2.254  0.212  H11 YQ2 41 
YQ2 H12 H12 H 0 1 N N N N N N 9.257  -15.343 -25.909 -6.325 2.044  0.702  H12 YQ2 42 
YQ2 H13 H13 H 0 1 N N N N N N 7.662  -17.347 -21.002 -0.504 0.911  0.124  H13 YQ2 43 
YQ2 H14 H14 H 0 1 N N N N N N 11.472 -18.927 -15.058 5.430  4.313  -1.164 H14 YQ2 44 
YQ2 H15 H15 H 0 1 N N N N N N 12.819 -18.846 -16.243 5.234  3.975  0.572  H15 YQ2 45 
YQ2 H16 H16 H 0 1 N N N N N N 9.991  -15.644 -15.961 5.642  0.278  0.245  H16 YQ2 46 
YQ2 H17 H17 H 0 1 N N N N N N 9.781  -17.145 -14.998 5.513  1.604  1.427  H17 YQ2 47 
YQ2 H18 H18 H 0 1 N N N N N N 4.351  -15.842 -21.518 -1.979 -2.331 -0.711 H18 YQ2 48 
YQ2 H19 H19 H 0 1 N N N N N N 8.616  -12.918 -22.485 -2.764 4.381  0.880  H19 YQ2 49 
YQ2 H20 H20 H 0 1 N N N N N N 4.391  -13.957 -17.707 1.583  -4.459 0.246  H20 YQ2 50 
YQ2 H21 H21 H 0 1 N N N N N N 7.417  -16.357 -15.548 4.228  -1.454 -0.915 H21 YQ2 51 
YQ2 H22 H22 H 0 1 N N N N N N 8.426  -15.027 -16.212 4.803  -1.189 0.752  H22 YQ2 52 
YQ2 H23 H23 H 0 1 N N N N N N 2.126  -14.668 -19.703 -1.420 -5.125 0.590  H23 YQ2 53 
YQ2 H24 H24 H 0 1 N N N N N N 2.992  -13.109 -19.485 -1.792 -4.748 -1.109 H24 YQ2 54 
YQ2 H25 H25 H 0 1 N N N N N N 2.987  -13.917 -21.090 -0.299 -5.625 -0.698 H25 YQ2 55 
YQ2 H26 H26 H 0 1 N N N N N N 5.550  -16.554 -22.713 -2.775 -0.854 -0.380 H26 YQ2 56 
YQ2 H27 H27 H 0 1 N N N N N N 7.179  -19.066 -25.503 -6.909 -1.226 -0.194 H27 YQ2 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YQ2 O3  C23 DOUB N N 1  
YQ2 C23 O2  SING N N 2  
YQ2 C23 C18 SING N N 3  
YQ2 C19 C18 DOUB Y N 4  
YQ2 C19 C20 SING Y N 5  
YQ2 C18 C17 SING Y N 6  
YQ2 C20 C21 DOUB Y N 7  
YQ2 C17 N4  SING N N 8  
YQ2 C17 C22 DOUB Y N 9  
YQ2 C21 C22 SING Y N 10 
YQ2 N4  C10 SING N N 11 
YQ2 C10 C11 SING N N 12 
YQ2 C10 C3  SING N N 13 
YQ2 C2  C3  DOUB Y N 14 
YQ2 C2  C1  SING Y N 15 
YQ2 C3  C4  SING Y N 16 
YQ2 C9  C1  SING N N 17 
YQ2 C1  C5  DOUB Y N 18 
YQ2 C4  N2  SING N N 19 
YQ2 C4  N1  DOUB Y N 20 
YQ2 N2  C6  DOUB N N 21 
YQ2 C5  N1  SING Y N 22 
YQ2 N1  C8  SING N N 23 
YQ2 C6  N3  SING N N 24 
YQ2 C6  C7  SING N N 25 
YQ2 C13 C12 SING N N 26 
YQ2 C13 C14 SING N N 27 
YQ2 C12 N3  SING N N 28 
YQ2 N3  C16 SING N N 29 
YQ2 C8  C7  SING N N 30 
YQ2 C8  O1  DOUB N N 31 
YQ2 C15 C14 SING N N 32 
YQ2 C15 C16 SING N N 33 
YQ2 C13 H1  SING N N 34 
YQ2 C13 H2  SING N N 35 
YQ2 C15 H3  SING N N 36 
YQ2 C15 H4  SING N N 37 
YQ2 C20 H5  SING N N 38 
YQ2 C22 H6  SING N N 39 
YQ2 C11 H7  SING N N 40 
YQ2 C11 H8  SING N N 41 
YQ2 C11 H9  SING N N 42 
YQ2 C12 H10 SING N N 43 
YQ2 C12 H11 SING N N 44 
YQ2 C19 H12 SING N N 45 
YQ2 C10 H13 SING N N 46 
YQ2 C14 H14 SING N N 47 
YQ2 C14 H15 SING N N 48 
YQ2 C16 H16 SING N N 49 
YQ2 C16 H17 SING N N 50 
YQ2 C2  H18 SING N N 51 
YQ2 C21 H19 SING N N 52 
YQ2 C5  H20 SING N N 53 
YQ2 C7  H21 SING N N 54 
YQ2 C7  H22 SING N N 55 
YQ2 C9  H23 SING N N 56 
YQ2 C9  H24 SING N N 57 
YQ2 C9  H25 SING N N 58 
YQ2 N4  H26 SING N N 59 
YQ2 O2  H27 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YQ2 SMILES           ACDLabs              12.01 "O=C(O)c1ccccc1NC(C)c1cc(C)c[n+]2c1N=C(CC2=O)N1CCCCC1"                                                                                                                          
YQ2 InChI            InChI                1.06  "InChI=1S/C23H26N4O3/c1-15-12-18(16(2)24-19-9-5-4-8-17(19)23(29)30)22-25-20(13-21(28)27(22)14-15)26-10-6-3-7-11-26/h4-5,8-9,12,14,16,24H,3,6-7,10-11,13H2,1-2H3/p+1/t16-/m1/s1" 
YQ2 InChIKey         InChI                1.06  QCAAPBLGXMBOBO-MRXNPFEDSA-O                                                                                                                                                     
YQ2 SMILES_CANONICAL CACTVS               3.385 "C[C@@H](Nc1ccccc1C(O)=O)c2cc(C)c[n+]3C(=O)CC(=Nc23)N4CCCCC4"                                                                                                                   
YQ2 SMILES           CACTVS               3.385 "C[CH](Nc1ccccc1C(O)=O)c2cc(C)c[n+]3C(=O)CC(=Nc23)N4CCCCC4"                                                                                                                     
YQ2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c2[n+](c1)C(=O)CC(=N2)N3CCCCC3)[C@@H](C)Nc4ccccc4C(=O)O"                                                                                                                 
YQ2 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(c2[n+](c1)C(=O)CC(=N2)N3CCCCC3)C(C)Nc4ccccc4C(=O)O"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YQ2 "SYSTEMATIC NAME" ACDLabs              12.01 "9-[(1R)-1-(2-carboxyanilino)ethyl]-7-methyl-4-oxo-2-(piperidin-1-yl)-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium"              
YQ2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(1~{R})-1-(7-methyl-4-oxidanylidene-2-piperidin-1-yl-3~{H}-pyrido[1,2-a]pyrimidin-5-ium-9-yl)ethyl]amino]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YQ2 "Create component" 2023-12-08 RCSB 
YQ2 "Initial release"  2024-03-20 RCSB 
# 
