data_1S3
#

_chem_comp.id                                   1S3
_chem_comp.name                                 "(2R,3aR,5R,6S,7S,7aR)-5-(hydroxymethyl)tetrahydro-3aH-[1,3,2]dioxaphospholo[4,5-b]pyran-2,6,7-triol 2-oxide"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H11 O8 P"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        "Glucose1,2cyclic phosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-05-15
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       242.121
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1S3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4KQ2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     1S3
_pdbx_chem_comp_synonyms.name        "Glucose1,2cyclic phosphate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1S3  C1   C1   C  0  1  N  N  R  72.618  44.551  66.597   0.171   0.948   1.020  C1   1S3   1  
1S3  O1   O1   O  0  1  N  N  N  72.760  44.526  68.026   0.838   1.423  -0.163  O1   1S3   2  
1S3  P    P    P  0  1  N  N  N  73.685  45.795  68.427   2.149   0.465  -0.287  P    1S3   3  
1S3  O2P  O2P  O  0  1  N  N  N  73.022  46.685  69.456   2.148  -0.316  -1.695  O2P  1S3   4  
1S3  O3P  O3P  O  0  1  N  N  N  75.043  45.328  68.888   3.389   1.259  -0.136  O3P  1S3   5  
1S3  O5   O5   O  0  1  N  N  N  71.372  43.994  66.122  -1.234   1.102   0.917  O5   1S3   6  
1S3  C5   C5   C  0  1  N  N  R  70.203  44.823  66.276  -1.859   0.346  -0.121  C5   1S3   7  
1S3  C6   C6   C  0  1  N  N  N  68.972  44.084  65.754  -3.364   0.618  -0.118  C6   1S3   8  
1S3  O6   O6   O  0  1  N  N  N  69.174  43.675  64.398  -3.602   1.987  -0.454  O6   1S3   9  
1S3  C4   C4   C  0  1  N  N  S  70.391  46.203  65.620  -1.602  -1.143   0.131  C4   1S3  10  
1S3  O4   O4   O  0  1  N  N  N  69.253  47.058  65.814  -2.210  -1.917  -0.906  O4   1S3  11  
1S3  C3   C3   C  0  1  N  N  S  71.610  46.885  66.231  -0.092  -1.388   0.135  C3   1S3  12  
1S3  O3   O3   O  0  1  N  N  N  71.891  48.129  65.587   0.166  -2.766   0.407  O3   1S3  13  
1S3  C2   C2   C  0  1  N  N  R  72.854  46.004  66.153   0.551  -0.531   1.202  C2   1S3  14  
1S3  O2   O2   O  0  1  N  N  N  73.817  46.586  67.030   1.984  -0.581   0.954  O2   1S3  15  
1S3  H1   H1   H  0  1  N  N  N  73.436  43.954  66.167   0.529   1.515   1.880  H1   1S3  16  
1S3  H2A  H2   H  0  1  N  N  N  73.595  46.782  70.208   2.158   0.265  -2.467  H2A  1S3  17  
1S3  H5   H3   H  0  1  N  N  N  70.045  44.997  67.351  -1.438   0.632  -1.086  H5   1S3  18  
1S3  H61  H4   H  0  1  N  N  N  68.099  44.752  65.805  -3.851  -0.025  -0.851  H61  1S3  19  
1S3  H62  H5   H  0  1  N  N  N  68.791  43.196  66.377  -3.769   0.411   0.872  H62  1S3  20  
1S3  HO6  H6   H  0  1  N  Y  N  68.402  43.217  64.086  -4.538   2.231  -0.471  HO6  1S3  21  
1S3  H4   H7   H  0  1  N  N  N  70.571  46.057  64.545  -2.021  -1.430   1.095  H4   1S3  22  
1S3  HO4  H8   H  0  1  N  Y  N  68.482  46.649  65.439  -3.169  -1.810  -0.965  HO4  1S3  23  
1S3  H3   H9   H  0  1  N  N  N  71.395  47.071  67.294   0.320  -1.127  -0.840  H3   1S3  24  
1S3  HO3  H10  H  0  1  N  Y  N  72.654  48.529  65.989  -0.220  -3.374  -0.240  HO3  1S3  25  
1S3  H2   H11  H  0  1  N  N  N  73.228  46.003  65.119   0.290  -0.881   2.201  H2   1S3  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1S3  O6   C6   SING  N  N   1  
1S3  O3   C3   SING  N  N   2  
1S3  C4   O4   SING  N  N   3  
1S3  C4   C3   SING  N  N   4  
1S3  C4   C5   SING  N  N   5  
1S3  C6   C5   SING  N  N   6  
1S3  O5   C5   SING  N  N   7  
1S3  O5   C1   SING  N  N   8  
1S3  C2   C3   SING  N  N   9  
1S3  C2   C1   SING  N  N  10  
1S3  C2   O2   SING  N  N  11  
1S3  C1   O1   SING  N  N  12  
1S3  O2   P    SING  N  N  13  
1S3  O1   P    SING  N  N  14  
1S3  P    O3P  DOUB  N  N  15  
1S3  P    O2P  SING  N  N  16  
1S3  C1   H1   SING  N  N  17  
1S3  O2P  H2A  SING  N  N  18  
1S3  C5   H5   SING  N  N  19  
1S3  C6   H61  SING  N  N  20  
1S3  C6   H62  SING  N  N  21  
1S3  O6   HO6  SING  N  N  22  
1S3  C4   H4   SING  N  N  23  
1S3  O4   HO4  SING  N  N  24  
1S3  C3   H3   SING  N  N  25  
1S3  O3   HO3  SING  N  N  26  
1S3  C2   H2   SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1S3  SMILES            ACDLabs               12.01  "O=P1(OC2C(O)C(O)C(OC2O1)CO)O"  
1S3  InChI             InChI                 1.03   "InChI=1S/C6H11O8P/c7-1-2-3(8)4(9)5-6(12-2)14-15(10,11)13-5/h2-9H,1H2,(H,10,11)/t2-,3-,4+,5-,6-/m1/s1"  
1S3  InChIKey          InChI                 1.03   PUJJEEQZLDDQPG-VFUOTHLCSA-N  
1S3  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1O[C@@H]2O[P](O)(=O)O[C@@H]2[C@@H](O)[C@@H]1O"  
1S3  SMILES            CACTVS                3.370  "OC[CH]1O[CH]2O[P](O)(=O)O[CH]2[CH](O)[CH]1O"  
1S3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@H]([C@@H]([C@@H]2[C@H](O1)OP(=O)(O2)O)O)O)O"  
1S3  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C2C(O1)OP(=O)(O2)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1S3  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3aR,5R,6S,7S,7aR)-5-(hydroxymethyl)tetrahydro-3aH-[1,3,2]dioxaphospholo[4,5-b]pyran-2,6,7-triol 2-oxide"  
1S3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  
;(3aR,5R,6S,7S,7aR)-5-(hydroxymethyl)-2-oxidanyl-2-oxidanylidene-5,6,7,7a-tetrahydro-3aH-[1,3,2]dioxaphospholo[4,5-b]pyr
an-6,7-diol
;
  
#
_pdbx_chem_comp_related.comp_id            1S3
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  1S3  C1   GLC  C1   "Carbohydrate core"  
 2  1S3  C2   GLC  C2   "Carbohydrate core"  
 3  1S3  C3   GLC  C3   "Carbohydrate core"  
 4  1S3  C4   GLC  C4   "Carbohydrate core"  
 5  1S3  C5   GLC  C5   "Carbohydrate core"  
 6  1S3  C6   GLC  C6   "Carbohydrate core"  
 7  1S3  O1   GLC  O1   "Carbohydrate core"  
 8  1S3  O2   GLC  O2   "Carbohydrate core"  
 9  1S3  O3   GLC  O3   "Carbohydrate core"  
10  1S3  O4   GLC  O4   "Carbohydrate core"  
11  1S3  O5   GLC  O5   "Carbohydrate core"  
12  1S3  O6   GLC  O6   "Carbohydrate core"  
13  1S3  H1   GLC  H1   "Carbohydrate core"  
14  1S3  HO3  GLC  HO3  "Carbohydrate core"  
15  1S3  H2   GLC  H2   "Carbohydrate core"  
16  1S3  H5   GLC  H5   "Carbohydrate core"  
17  1S3  H61  GLC  H61  "Carbohydrate core"  
18  1S3  H62  GLC  H62  "Carbohydrate core"  
19  1S3  HO6  GLC  HO6  "Carbohydrate core"  
20  1S3  H4   GLC  H4   "Carbohydrate core"  
21  1S3  HO4  GLC  HO4  "Carbohydrate core"  
22  1S3  H3   GLC  H3   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
1S3  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
1S3  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
1S3  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
1S3  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1S3  "Create component"          2013-05-15  RCSB  
1S3  "Initial release"           2013-12-11  RCSB  
1S3  "Other modification"        2020-07-03  RCSB  
1S3  "Modify parent residue"     2020-07-17  RCSB  
1S3  "Modify linking type"       2020-07-17  RCSB  
1S3  "Modify atom id"            2020-07-17  RCSB  
1S3  "Modify component atom id"  2020-07-17  RCSB  
1S3  "Modify leaving atom flag"  2020-07-17  RCSB  
##
