data_3I3
#

_chem_comp.id                                   3I3
_chem_comp.name                                 "4-[7-(methanesulfonyl)-1H-indol-3-yl]-N-[(3S)-piperidin-3-yl]-5-(trifluoromethyl)pyrimidin-2-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 F3 N5 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-05
_chem_comp.pdbx_modified_date                   2021-10-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       439.455
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3I3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RA5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3I3  C1   C1   C  0  1  N  N  N  38.440  31.190  -41.941   5.579   1.543   1.932  C1   3I3   1  
3I3  C5   C2   C  0  1  Y  N  N  38.343  28.485  -42.611   3.981   1.230  -0.379  C5   3I3   2  
3I3  C6   C3   C  0  1  Y  N  N  38.773  27.469  -41.757   3.667   2.171  -1.335  C6   3I3   3  
3I3  C7   C4   C  0  1  Y  N  N  39.577  26.430  -42.232   2.362   2.314  -1.785  C7   3I3   4  
3I3  C8   C5   C  0  1  Y  N  N  39.930  26.373  -43.564   1.366   1.520  -1.287  C8   3I3   5  
3I3  C11  C6   C  0  1  Y  N  N  39.018  28.775  -46.136   1.718  -1.080   1.247  C11  3I3   6  
3I3  C15  C7   C  0  1  Y  N  N  40.440  26.718  -46.752  -0.591  -0.667   0.284  C15  3I3   7  
3I3  C17  C8   C  0  1  Y  N  N  42.271  25.295  -46.925  -2.762   0.110   0.370  C17  3I3   8  
3I3  C19  C9   C  0  1  Y  N  N  40.956  25.523  -48.760  -2.441  -2.105  -0.187  C19  3I3   9  
3I3  C21  C10  C  0  1  N  N  N  38.938  26.989  -48.839  -0.128  -3.079  -0.311  C21  3I3  10  
3I3  C30  C11  C  0  1  N  N  N  45.934  25.381  -43.079  -7.684   1.917  -0.357  C30  3I3  11  
3I3  C32  C12  C  0  1  N  N  N  44.440  26.330  -44.845  -5.495   1.102  -1.001  C32  3I3  12  
3I3  S2   S1   S  0  1  N  N  N  37.301  29.802  -42.040   5.642   1.062   0.184  S2   3I3  13  
3I3  O3   O1   O  0  1  N  N  N  36.362  29.953  -43.102   6.367   2.023  -0.572  O3   3I3  14  
3I3  O4   O2   O  0  1  N  N  N  36.813  29.398  -40.768   5.916  -0.327   0.058  O4   3I3  15  
3I3  C9   C13  C  0  1  Y  N  N  39.496  27.375  -44.437   1.663   0.562  -0.320  C9   3I3  16  
3I3  C10  C14  C  0  1  Y  N  N  39.675  27.623  -45.868   0.862  -0.429   0.418  C10  3I3  17  
3I3  N12  N1   N  0  1  Y  N  N  38.438  29.249  -45.016   2.978  -0.593   1.083  N12  3I3  18  
3I3  C14  C15  C  0  1  Y  N  N  38.703  28.436  -43.961   2.981   0.416   0.144  C14  3I3  19  
3I3  N16  N2   N  0  1  Y  N  N  41.486  26.107  -46.223  -1.461   0.322   0.490  N16  3I3  20  
3I3  N18  N3   N  0  1  Y  N  N  42.002  25.011  -48.185  -3.247  -1.080   0.044  N18  3I3  21  
3I3  C20  C16  C  0  1  Y  N  N  40.122  26.422  -48.101  -1.075  -1.932  -0.068  C20  3I3  22  
3I3  F22  F1   F  0  1  N  N  N  38.831  26.370  -50.046   0.522  -3.408   0.883  F22  3I3  23  
3I3  F23  F2   F  0  1  N  N  N  37.759  26.813  -48.136  -0.847  -4.188  -0.771  F23  3I3  24  
3I3  F24  F3   F  0  1  N  N  N  39.072  28.354  -49.114   0.819  -2.707  -1.271  F24  3I3  25  
3I3  N25  N4   N  0  1  N  N  N  43.351  24.702  -46.340  -3.639   1.157   0.592  N25  3I3  26  
3I3  C26  C17  C  0  1  N  N  S  43.706  24.968  -44.945  -5.083   0.944   0.464  C26  3I3  27  
3I3  C28  C18  C  0  1  N  N  N  44.665  23.842  -44.536  -5.830   1.975   1.314  C28  3I3  28  
3I3  C29  C19  C  0  1  N  N  N  45.126  24.078  -43.110  -7.337   1.783   1.127  C29  3I3  29  
3I3  N31  N5   N  0  1  N  N  N  45.090  26.502  -43.514  -6.945   0.908  -1.127  N31  3I3  30  
3I3  H1   H1   H  0  1  N  N  N  39.143  31.030  -41.110   4.899   0.880   2.467  H1   3I3  31  
3I3  H2   H2   H  0  1  N  N  N  39.000  31.273  -42.884   6.576   1.468   2.365  H2   3I3  32  
3I3  H3   H3   H  0  1  N  N  N  37.874  32.117  -41.768   5.224   2.570   2.013  H3   3I3  33  
3I3  H4   H4   H  0  1  N  N  N  38.481  27.486  -40.717   4.444   2.805  -1.737  H4   3I3  34  
3I3  H5   H5   H  0  1  N  N  N  39.924  25.666  -41.552   2.132   3.057  -2.534  H5   3I3  35  
3I3  H6   H6   H  0  1  N  N  N  40.538  25.559  -43.930   0.353   1.636  -1.642  H6   3I3  36  
3I3  H7   H7   H  0  1  N  N  N  38.966  29.246  -47.106   1.441  -1.871   1.929  H7   3I3  37  
3I3  H8   H8   H  0  1  N  N  N  40.727  25.244  -49.778  -2.847  -3.070  -0.452  H8   3I3  38  
3I3  H9   H9   H  0  1  N  N  N  46.798  25.291  -43.754  -8.755   1.767  -0.495  H9   3I3  39  
3I3  H10  H10  H  0  1  N  N  N  46.288  25.567  -42.054  -7.410   2.913  -0.706  H10  3I3  40  
3I3  H11  H11  H  0  1  N  N  N  45.210  26.380  -45.629  -5.231   2.101  -1.347  H11  3I3  41  
3I3  H12  H12  H  0  1  N  N  N  43.712  27.141  -44.995  -4.976   0.359  -1.607  H12  3I3  42  
3I3  H13  H13  H  0  1  N  N  N  37.889  30.083  -44.968   3.760  -0.903   1.567  H13  3I3  43  
3I3  H14  H14  H  0  1  N  N  N  43.204  23.715  -46.411  -3.298   2.033   0.831  H14  3I3  44  
3I3  H15  H15  H  0  1  N  N  N  42.817  24.968  -44.297  -5.334  -0.060   0.806  H15  3I3  45  
3I3  H16  H16  H  0  1  N  N  N  44.146  22.874  -44.600  -5.572   1.838   2.364  H16  3I3  46  
3I3  H17  H17  H  0  1  N  N  N  45.535  23.837  -45.209  -5.549   2.980   0.997  H17  3I3  47  
3I3  H18  H18  H  0  1  N  N  N  44.253  24.165  -42.446  -7.874   2.542   1.696  H18  3I3  48  
3I3  H19  H19  H  0  1  N  N  N  45.757  23.240  -42.779  -7.624   0.793   1.480  H19  3I3  49  
3I3  H20  H20  H  0  1  N  N  N  45.661  27.322  -43.553  -7.228   0.913  -2.095  H20  3I3  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3I3  F22  C21  SING  N  N   1  
3I3  F24  C21  SING  N  N   2  
3I3  C21  F23  SING  N  N   3  
3I3  C21  C20  SING  N  N   4  
3I3  C19  N18  DOUB  Y  N   5  
3I3  C19  C20  SING  Y  N   6  
3I3  N18  C17  SING  Y  N   7  
3I3  C20  C15  DOUB  Y  N   8  
3I3  C17  N25  SING  N  N   9  
3I3  C17  N16  DOUB  Y  N  10  
3I3  C15  N16  SING  Y  N  11  
3I3  C15  C10  SING  N  N  12  
3I3  N25  C26  SING  N  N  13  
3I3  C11  C10  DOUB  Y  N  14  
3I3  C11  N12  SING  Y  N  15  
3I3  C10  C9   SING  Y  N  16  
3I3  N12  C14  SING  Y  N  17  
3I3  C26  C32  SING  N  N  18  
3I3  C26  C28  SING  N  N  19  
3I3  C32  N31  SING  N  N  20  
3I3  C28  C29  SING  N  N  21  
3I3  C9   C14  DOUB  Y  N  22  
3I3  C9   C8   SING  Y  N  23  
3I3  C14  C5   SING  Y  N  24  
3I3  C8   C7   DOUB  Y  N  25  
3I3  N31  C30  SING  N  N  26  
3I3  C29  C30  SING  N  N  27  
3I3  O3   S2   DOUB  N  N  28  
3I3  C5   S2   SING  N  N  29  
3I3  C5   C6   DOUB  Y  N  30  
3I3  C7   C6   SING  Y  N  31  
3I3  S2   C1   SING  N  N  32  
3I3  S2   O4   DOUB  N  N  33  
3I3  C1   H1   SING  N  N  34  
3I3  C1   H2   SING  N  N  35  
3I3  C1   H3   SING  N  N  36  
3I3  C6   H4   SING  N  N  37  
3I3  C7   H5   SING  N  N  38  
3I3  C8   H6   SING  N  N  39  
3I3  C11  H7   SING  N  N  40  
3I3  C19  H8   SING  N  N  41  
3I3  C30  H9   SING  N  N  42  
3I3  C30  H10  SING  N  N  43  
3I3  C32  H11  SING  N  N  44  
3I3  C32  H12  SING  N  N  45  
3I3  N12  H13  SING  N  N  46  
3I3  N25  H14  SING  N  N  47  
3I3  C26  H15  SING  N  N  48  
3I3  C28  H16  SING  N  N  49  
3I3  C28  H17  SING  N  N  50  
3I3  C29  H18  SING  N  N  51  
3I3  C29  H19  SING  N  N  52  
3I3  N31  H20  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3I3  SMILES            ACDLabs               12.01  "CS(=O)(=O)c1cccc2c1[NH]cc2c1nc(ncc1C(F)(F)F)NC1CCCNC1"  
3I3  InChI             InChI                 1.03   "InChI=1S/C19H20F3N5O2S/c1-30(28,29)15-6-2-5-12-13(9-24-17(12)15)16-14(19(20,21)22)10-25-18(27-16)26-11-4-3-7-23-8-11/h2,5-6,9-11,23-24H,3-4,7-8H2,1H3,(H,25,26,27)/t11-/m0/s1"  
3I3  InChIKey          InChI                 1.03   NUMHIIKAGFNIFT-NSHDSACASA-N  
3I3  SMILES_CANONICAL  CACTVS                3.385  "C[S](=O)(=O)c1cccc2c1[nH]cc2c3nc(N[C@H]4CCCNC4)ncc3C(F)(F)F"  
3I3  SMILES            CACTVS                3.385  "C[S](=O)(=O)c1cccc2c1[nH]cc2c3nc(N[CH]4CCCNC4)ncc3C(F)(F)F"  
3I3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CS(=O)(=O)c1cccc2c1[nH]cc2c3c(cnc(n3)N[C@H]4CCCNC4)C(F)(F)F"  
3I3  SMILES            "OpenEye OEToolkits"  2.0.7  "CS(=O)(=O)c1cccc2c1[nH]cc2c3c(cnc(n3)NC4CCCNC4)C(F)(F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3I3  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-[7-(methanesulfonyl)-1H-indol-3-yl]-N-[(3S)-piperidin-3-yl]-5-(trifluoromethyl)pyrimidin-2-amine"  
3I3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-(7-methylsulfonyl-1~{H}-indol-3-yl)-~{N}-[(3~{S})-piperidin-3-yl]-5-(trifluoromethyl)pyrimidin-2-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3I3  "Create component"  2021-07-05  RCSB  
3I3  "Initial release"   2021-11-03  RCSB  
##
