data_6K3
#

_chem_comp.id                                   6K3
_chem_comp.name                                 "heptyl 4-deoxy-4-fluoro-alpha-D-mannopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H25 F O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4-Fluoro-Heptylmannoside; heptyl 4-deoxy-4-fluoro-alpha-D-mannoside; heptyl 4-deoxy-4-fluoro-D-mannoside; heptyl
4-deoxy-4-fluoro-mannoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-05-27
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       280.333
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6K3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5L4Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  6K3  4-Fluoro-Heptylmannoside                     PDB  ?  
2  6K3  "heptyl 4-deoxy-4-fluoro-alpha-D-mannoside"  PDB  ?  
3  6K3  "heptyl 4-deoxy-4-fluoro-D-mannoside"        PDB  ?  
4  6K3  "heptyl 4-deoxy-4-fluoro-mannoside"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6K3  C4   C4   C  0  1  N  N  S  -21.239  -6.660  -11.713  -3.298   0.472  -0.672  C4   6K3   1  
6K3  C5   C5   C  0  1  N  N  R  -21.521  -5.372  -12.488  -2.089   1.143  -0.014  C5   6K3   2  
6K3  C6   C6   C  0  1  N  N  N  -22.725  -4.670  -11.878  -2.399   2.621   0.235  C6   6K3   3  
6K3  C3   C3   C  0  1  N  N  R  -19.915  -7.294  -12.145  -3.002  -1.019  -0.863  C3   6K3   4  
6K3  CAR  CAR  C  0  1  N  N  N  -22.609  -4.377  -22.163   8.245   0.350  -0.235  CAR  6K3   5  
6K3  CAQ  CAQ  C  0  1  N  N  N  -22.082  -5.241  -21.031   6.944  -0.157  -0.860  CAQ  6K3   6  
6K3  CAP  CAP  C  0  1  N  N  N  -21.512  -4.346  -19.935   5.792   0.047   0.126  CAP  6K3   7  
6K3  CAO  CAO  C  0  1  N  N  N  -21.263  -5.190  -18.698   4.490  -0.459  -0.499  CAO  6K3   8  
6K3  CAN  CAN  C  0  1  N  N  N  -20.839  -4.297  -17.522   3.338  -0.255   0.487  CAN  6K3   9  
6K3  CAM  CAM  C  0  1  N  N  N  -20.164  -5.188  -16.494   2.036  -0.761  -0.138  CAM  6K3  10  
6K3  CAL  CAL  C  0  1  N  N  N  -19.677  -4.404  -15.271   0.884  -0.558   0.848  CAL  6K3  11  
6K3  O1   O1   O  0  1  N  N  N  -19.221  -5.409  -14.344  -0.331  -1.030   0.265  O1   6K3  12  
6K3  C1   C1   C  0  1  N  N  S  -19.160  -5.049  -12.956  -1.476  -0.885   1.108  C1   6K3  13  
6K3  O5   O5   O  0  1  N  N  N  -20.390  -4.489  -12.442  -1.806   0.500   1.230  O5   6K3  14  
6K3  O6   O6   O  0  1  N  N  N  -22.340  -4.039  -10.631  -1.234   3.274   0.741  O6   6K3  15  
6K3  F4   F4   F  0  1  N  N  N  -22.189  -7.583  -11.996  -3.543   1.064  -1.915  F4   6K3  16  
6K3  O3   O3   O  0  1  N  N  N  -19.639  -8.362  -11.258  -4.152  -1.668  -1.408  O3   6K3  17  
6K3  C2   C2   C  0  1  N  N  S  -18.776  -6.261  -12.135  -2.660  -1.639   0.496  C2   6K3  18  
6K3  O2   O2   O  0  1  N  N  N  -18.506  -5.779  -10.818  -3.790  -1.539   1.365  O2   6K3  19  
6K3  H4   H1   H  0  1  N  N  N  -21.197  -6.433  -10.637  -4.173   0.590  -0.032  H4   6K3  20  
6K3  H5   H2   H  0  1  N  N  N  -21.753  -5.632  -13.531  -1.224   1.060  -0.672  H5   6K3  21  
6K3  H61  H3   H  0  1  N  N  N  -23.095  -3.905  -12.576  -2.702   3.091  -0.701  H61  6K3  22  
6K3  H62  H4   H  0  1  N  N  N  -23.519  -5.406  -11.686  -3.208   2.705   0.961  H62  6K3  23  
6K3  H3   H5   H  0  1  N  N  N  -20.029  -7.675  -13.171  -2.157  -1.139  -1.541  H3   6K3  24  
6K3  H6   H6   H  0  1  N  N  N  -23.021  -5.020  -22.955   8.149   1.410  -0.003  H6   6K3  25  
6K3  H7   H7   H  0  1  N  N  N  -23.400  -3.714  -21.781   8.449  -0.206   0.681  H7   6K3  26  
6K3  H8   H8   H  0  1  N  N  N  -21.789  -3.770  -22.573   9.066   0.204  -0.937  H8   6K3  27  
6K3  H9   H9   H  0  1  N  N  N  -22.902  -5.848  -20.620   6.741   0.398  -1.776  H9   6K3  28  
6K3  H10  H10  H  0  1  N  N  N  -21.291  -5.904  -21.412   7.041  -1.217  -1.091  H10  6K3  29  
6K3  H11  H11  H  0  1  N  N  N  -20.566  -3.900  -20.276   5.995  -0.508   1.042  H11  6K3  30  
6K3  H12  H12  H  0  1  N  N  N  -22.230  -3.547  -19.699   5.695   1.108   0.358  H12  6K3  31  
6K3  H13  H13  H  0  1  N  N  N  -22.186  -5.726  -18.432   4.287   0.096  -1.414  H13  6K3  32  
6K3  H14  H14  H  0  1  N  N  N  -20.464  -5.917  -18.909   4.587  -1.520  -0.730  H14  6K3  33  
6K3  H15  H15  H  0  1  N  N  N  -20.136  -3.526  -17.870   3.541  -0.810   1.403  H15  6K3  34  
6K3  H16  H16  H  0  1  N  N  N  -21.723  -3.815  -17.079   3.241   0.805   0.719  H16  6K3  35  
6K3  H17  H17  H  0  1  N  N  N  -20.883  -5.951  -16.161   1.833  -0.206  -1.054  H17  6K3  36  
6K3  H18  H18  H  0  1  N  N  N  -19.300  -5.679  -16.965   2.133  -1.822  -0.369  H18  6K3  37  
6K3  H19  H19  H  0  1  N  N  N  -18.853  -3.729  -15.547   1.087  -1.112   1.764  H19  6K3  38  
6K3  H20  H20  H  0  1  N  N  N  -20.499  -3.819  -14.834   0.788   0.503   1.080  H20  6K3  39  
6K3  H1   H21  H  0  1  N  N  N  -18.363  -4.301  -12.828  -1.255  -1.294   2.094  H1   6K3  40  
6K3  HO6  H22  H  0  1  N  Y  N  -23.093  -3.601  -10.251  -1.358   4.215   0.923  HO6  6K3  41  
6K3  HO3  H23  H  0  1  N  Y  N  -20.355  -8.986  -11.281  -4.425  -1.326  -2.270  HO3  6K3  42  
6K3  H2   H24  H  0  1  N  N  N  -17.875  -6.720  -12.567  -2.394  -2.687   0.361  H2   6K3  43  
6K3  HO2  H25  H  0  1  N  Y  N  -18.258  -6.506  -10.259  -3.644  -1.913   2.244  HO2  6K3  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6K3  CAR  CAQ  SING  N  N   1  
6K3  CAQ  CAP  SING  N  N   2  
6K3  CAP  CAO  SING  N  N   3  
6K3  CAO  CAN  SING  N  N   4  
6K3  CAN  CAM  SING  N  N   5  
6K3  CAM  CAL  SING  N  N   6  
6K3  CAL  O1   SING  N  N   7  
6K3  O1   C1   SING  N  N   8  
6K3  C1   O5   SING  N  N   9  
6K3  C1   C2   SING  N  N  10  
6K3  C5   O5   SING  N  N  11  
6K3  C5   C6   SING  N  N  12  
6K3  C5   C4   SING  N  N  13  
6K3  C3   C2   SING  N  N  14  
6K3  C3   C4   SING  N  N  15  
6K3  C3   O3   SING  N  N  16  
6K3  C2   O2   SING  N  N  17  
6K3  F4   C4   SING  N  N  18  
6K3  C6   O6   SING  N  N  19  
6K3  C4   H4   SING  N  N  20  
6K3  C5   H5   SING  N  N  21  
6K3  C6   H61  SING  N  N  22  
6K3  C6   H62  SING  N  N  23  
6K3  C3   H3   SING  N  N  24  
6K3  CAR  H6   SING  N  N  25  
6K3  CAR  H7   SING  N  N  26  
6K3  CAR  H8   SING  N  N  27  
6K3  CAQ  H9   SING  N  N  28  
6K3  CAQ  H10  SING  N  N  29  
6K3  CAP  H11  SING  N  N  30  
6K3  CAP  H12  SING  N  N  31  
6K3  CAO  H13  SING  N  N  32  
6K3  CAO  H14  SING  N  N  33  
6K3  CAN  H15  SING  N  N  34  
6K3  CAN  H16  SING  N  N  35  
6K3  CAM  H17  SING  N  N  36  
6K3  CAM  H18  SING  N  N  37  
6K3  CAL  H19  SING  N  N  38  
6K3  CAL  H20  SING  N  N  39  
6K3  C1   H1   SING  N  N  40  
6K3  O6   HO6  SING  N  N  41  
6K3  O3   HO3  SING  N  N  42  
6K3  C2   H2   SING  N  N  43  
6K3  O2   HO2  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6K3  InChI             InChI                 1.03   "InChI=1S/C13H25FO5/c1-2-3-4-5-6-7-18-13-12(17)11(16)10(14)9(8-15)19-13/h9-13,15-17H,2-8H2,1H3/t9-,10-,11+,12+,13+/m1/s1"  
6K3  InChIKey          InChI                 1.03   LFNSXYUDVVAWRK-BNDIWNMDSA-N  
6K3  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCO[C@H]1O[C@H](CO)[C@@H](F)[C@H](O)[C@@H]1O"  
6K3  SMILES            CACTVS                3.385  "CCCCCCCO[CH]1O[CH](CO)[CH](F)[CH](O)[CH]1O"  
6K3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "CCCCCCCO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)F)O)O"  
6K3  SMILES            "OpenEye OEToolkits"  2.0.5  "CCCCCCCOC1C(C(C(C(O1)CO)F)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          6K3
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{S},4~{R},5~{S},6~{R})-5-fluoranyl-2-heptoxy-6-(hydroxymethyl)oxane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
6K3  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
6K3  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
6K3  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
6K3  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6K3  "Create component"          2016-05-27  EBI   
6K3  "Other modification"        2016-06-02  RCSB  
6K3  "Initial release"           2017-06-21  RCSB  
6K3  "Other modification"        2020-07-03  RCSB  
6K3  "Modify name"               2020-07-17  RCSB  
6K3  "Modify synonyms"           2020-07-17  RCSB  
6K3  "Modify internal type"      2020-07-17  RCSB  
6K3  "Modify linking type"       2020-07-17  RCSB  
6K3  "Modify atom id"            2020-07-17  RCSB  
6K3  "Modify component atom id"  2020-07-17  RCSB  
6K3  "Modify leaving atom flag"  2020-07-17  RCSB  
##
