data_6V3
# 
_chem_comp.id                                    6V3 
_chem_comp.name                                  "1-(4-((1H-pyrrolo[2,3-b]pyridin-4-yl)oxy)phenyl)-3-(5-(4-methylpiperazin-1-yl)naphthalen-2-yl)urea" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H28 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-01 
_chem_comp.pdbx_modified_date                    2016-11-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        492.572 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5GJD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6V3 C1  C1  C 0 1 Y N N 0.395   -48.903 -17.777 5.579   0.861  -0.124 C1  6V3 1  
6V3 C2  C2  C 0 1 Y N N 0.459   -47.622 -18.313 5.448   2.227  -0.251 C2  6V3 2  
6V3 C3  C3  C 0 1 Y N N -0.543  -46.697 -18.068 4.210   2.800  -0.530 C3  6V3 3  
6V3 C4  C4  C 0 1 Y N N -1.625  -47.023 -17.309 3.098   2.030  -0.685 C4  6V3 4  
6V3 C5  C5  C 0 1 Y N N -0.729  -49.285 -16.976 4.444   0.037  -0.280 C5  6V3 5  
6V3 C6  C6  C 0 1 Y N N -1.750  -48.315 -16.741 3.189   0.632  -0.564 C6  6V3 6  
6V3 C7  C7  C 0 1 Y N N -2.865  -48.666 -15.953 2.058   -0.185 -0.718 C7  6V3 7  
6V3 C8  C8  C 0 1 Y N N -2.973  -49.925 -15.402 2.185   -1.551 -0.592 C8  6V3 8  
6V3 C9  C9  C 0 1 Y N N -1.984  -50.871 -15.638 3.428   -2.129 -0.312 C9  6V3 9  
6V3 C10 C10 C 0 1 Y N N -0.893  -50.573 -16.394 4.538   -1.358 -0.158 C10 6V3 10 
6V3 C12 C11 C 0 1 N N N 1.051   -50.801 -19.125 7.794   0.628  -0.904 C12 6V3 11 
6V3 C13 C12 C 0 1 N N N 2.224   -51.588 -19.641 9.123   -0.073 -0.608 C13 6V3 12 
6V3 C15 C13 C 0 1 N N N 3.828   -50.399 -18.361 8.644   0.021  1.763  C15 6V3 13 
6V3 N11 N1  N 0 1 N N N 1.397   -49.881 -18.033 6.824   0.298  0.149  N11 6V3 14 
6V3 N14 N2  N 0 1 N N N 3.257   -51.714 -18.626 9.615   0.352  0.710  N14 6V3 15 
6V3 C16 C14 C 0 1 N N N 2.784   -49.445 -17.807 7.316   0.722  1.467  C16 6V3 16 
6V3 C17 C15 C 0 1 N N N 4.297   -52.645 -19.069 9.930   1.786  0.718  C17 6V3 17 
6V3 N18 N3  N 0 1 N N N -4.117  -50.267 -14.644 1.060   -2.368 -0.746 N18 6V3 18 
6V3 C19 C16 C 0 1 N N N -5.404  -50.017 -15.040 -0.145  -1.944 -0.316 C19 6V3 19 
6V3 N20 N4  N 0 1 N N N -6.329  -50.896 -14.547 -1.190  -2.794 -0.292 N20 6V3 20 
6V3 O21 O1  O 0 1 N N N -5.700  -49.097 -15.794 -0.289  -0.793 0.050  O21 6V3 21 
6V3 C22 C17 C 0 1 Y N N -7.732  -50.764 -14.703 -2.478  -2.314 -0.022 C22 6V3 22 
6V3 C23 C18 C 0 1 Y N N -8.589  -50.970 -13.630 -2.651  -1.230 0.827  C23 6V3 23 
6V3 C24 C19 C 0 1 Y N N -9.954  -50.819 -13.787 -3.921  -0.757 1.092  C24 6V3 24 
6V3 C25 C20 C 0 1 Y N N -10.471 -50.466 -15.023 -5.024  -1.365 0.510  C25 6V3 25 
6V3 C26 C21 C 0 1 Y N N -9.626  -50.247 -16.094 -4.852  -2.448 -0.339 C26 6V3 26 
6V3 C27 C22 C 0 1 Y N N -8.261  -50.397 -15.935 -3.582  -2.919 -0.609 C27 6V3 27 
6V3 O28 O2  O 0 1 N N N -11.844 -50.298 -15.197 -6.274  -0.899 0.772  O28 6V3 28 
6V3 C29 C23 C 0 1 Y N N -12.383 -49.019 -15.094 -6.685  0.220  0.125  C29 6V3 29 
6V3 C30 C24 C 0 1 Y N N -11.721 -47.966 -14.471 -5.915  0.790  -0.880 C30 6V3 30 
6V3 C31 C25 C 0 1 Y N N -12.356 -46.737 -14.438 -6.369  1.933  -1.517 C31 6V3 31 
6V3 N32 N5  N 0 1 Y N N -13.571 -46.497 -14.960 -7.515  2.495  -1.193 N32 6V3 32 
6V3 C33 C26 C 0 1 Y N N -13.656 -48.813 -15.654 -7.904  0.835  0.447  C33 6V3 33 
6V3 C34 C27 C 0 1 Y N N -14.193 -47.532 -15.554 -8.295  1.997  -0.241 C34 6V3 34 
6V3 N35 N6  N 0 1 Y N N -15.418 -47.540 -16.155 -9.511  2.377  0.272  N35 6V3 35 
6V3 C36 C28 C 0 1 Y N N -15.663 -48.807 -16.633 -9.901  1.504  1.252  C36 6V3 36 
6V3 C37 C29 C 0 1 Y N N -14.614 -49.619 -16.350 -8.966  0.555  1.415  C37 6V3 37 
6V3 H1  H1  H 0 1 N N N 1.301   -47.344 -18.929 6.314   2.861  -0.132 H1  6V3 38 
6V3 H2  H2  H 0 1 N N N -0.465  -45.704 -18.485 4.130   3.873  -0.624 H2  6V3 39 
6V3 H3  H3  H 0 1 N N N -2.397  -46.288 -17.138 2.146   2.493  -0.900 H3  6V3 40 
6V3 H4  H4  H 0 1 N N N -3.645  -47.939 -15.779 1.095   0.254  -0.934 H4  6V3 41 
6V3 H5  H5  H 0 1 N N N -2.083  -51.860 -15.214 3.507   -3.202 -0.216 H5  6V3 42 
6V3 H6  H6  H 0 1 N N N -0.138  -51.328 -16.555 5.490   -1.819 0.058  H6  6V3 43 
6V3 H7  H7  H 0 1 N N N 0.633   -50.214 -19.956 7.950   1.707  -0.929 H7  6V3 44 
6V3 H8  H8  H 0 1 N N N 0.292   -51.508 -18.758 7.413   0.294  -1.868 H8  6V3 45 
6V3 H9  H9  H 0 1 N N N 1.883   -52.592 -19.933 8.972   -1.152 -0.610 H9  6V3 46 
6V3 H10 H10 H 0 1 N N N 2.643   -51.074 -20.519 9.853   0.195  -1.372 H10 6V3 47 
6V3 H11 H11 H 0 1 N N N 4.643   -50.503 -17.629 8.488   -1.058 1.788  H11 6V3 48 
6V3 H12 H12 H 0 1 N N N 4.228   -49.987 -19.299 9.025   0.356  2.728  H12 6V3 49 
6V3 H14 H14 H 0 1 N N N 2.944   -49.348 -16.723 6.586   0.454  2.231  H14 6V3 50 
6V3 H15 H15 H 0 1 N N N 2.921   -48.465 -18.287 7.466   1.801  1.469  H15 6V3 51 
6V3 H16 H16 H 0 1 N N N 5.070   -52.729 -18.291 9.033   2.357  0.479  H16 6V3 52 
6V3 H17 H17 H 0 1 N N N 3.851   -53.634 -19.251 10.292  2.073  1.705  H17 6V3 53 
6V3 H18 H18 H 0 1 N N N 4.752   -52.272 -19.998 10.700  1.992  -0.026 H18 6V3 54 
6V3 H19 H19 H 0 1 N N N -3.977  -50.720 -13.763 1.147   -3.240 -1.162 H19 6V3 55 
6V3 H20 H20 H 0 1 N N N -5.991  -51.689 -14.040 -1.050  -3.739 -0.461 H20 6V3 56 
6V3 H21 H21 H 0 1 N N N -8.187  -51.250 -12.668 -1.793  -0.757 1.281  H21 6V3 57 
6V3 H22 H22 H 0 1 N N N -10.616 -50.976 -12.948 -4.056  0.087  1.753  H22 6V3 58 
6V3 H23 H23 H 0 1 N N N -10.031 -49.959 -17.053 -5.710  -2.919 -0.796 H23 6V3 59 
6V3 H24 H24 H 0 1 N N N -7.601  -50.228 -16.773 -3.447  -3.762 -1.271 H24 6V3 60 
6V3 H25 H25 H 0 1 N N N -10.745 -48.103 -14.028 -4.971  0.347  -1.162 H25 6V3 61 
6V3 H26 H26 H 0 1 N N N -11.841 -45.916 -13.961 -5.768  2.374  -2.298 H26 6V3 62 
6V3 H27 H27 H 0 1 N N N -16.034 -46.757 -16.235 -10.019 3.151  -0.018 H27 6V3 63 
6V3 H28 H28 H 0 1 N N N -16.558 -49.110 -17.156 -10.817 1.577  1.820  H28 6V3 64 
6V3 H29 H29 H 0 1 N N N -14.520 -50.665 -16.600 -8.998  -0.267 2.115  H29 6V3 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6V3 C13 C12 SING N N 1  
6V3 C13 N14 SING N N 2  
6V3 C12 N11 SING N N 3  
6V3 C17 N14 SING N N 4  
6V3 N14 C15 SING N N 5  
6V3 C15 C16 SING N N 6  
6V3 C2  C3  SING Y N 7  
6V3 C2  C1  DOUB Y N 8  
6V3 C3  C4  DOUB Y N 9  
6V3 N11 C16 SING N N 10 
6V3 N11 C1  SING N N 11 
6V3 C1  C5  SING Y N 12 
6V3 C4  C6  SING Y N 13 
6V3 C5  C6  SING Y N 14 
6V3 C5  C10 DOUB Y N 15 
6V3 C6  C7  DOUB Y N 16 
6V3 C36 C37 DOUB Y N 17 
6V3 C36 N35 SING Y N 18 
6V3 C10 C9  SING Y N 19 
6V3 C37 C33 SING Y N 20 
6V3 N35 C34 SING Y N 21 
6V3 C26 C27 DOUB Y N 22 
6V3 C26 C25 SING Y N 23 
6V3 C7  C8  SING Y N 24 
6V3 C27 C22 SING Y N 25 
6V3 O21 C19 DOUB N N 26 
6V3 C33 C34 DOUB Y N 27 
6V3 C33 C29 SING Y N 28 
6V3 C9  C8  DOUB Y N 29 
6V3 C34 N32 SING Y N 30 
6V3 C8  N18 SING N N 31 
6V3 O28 C29 SING N N 32 
6V3 O28 C25 SING N N 33 
6V3 C29 C30 DOUB Y N 34 
6V3 C19 N18 SING N N 35 
6V3 C19 N20 SING N N 36 
6V3 C25 C24 DOUB Y N 37 
6V3 N32 C31 DOUB Y N 38 
6V3 C22 N20 SING N N 39 
6V3 C22 C23 DOUB Y N 40 
6V3 C30 C31 SING Y N 41 
6V3 C24 C23 SING Y N 42 
6V3 C2  H1  SING N N 43 
6V3 C3  H2  SING N N 44 
6V3 C4  H3  SING N N 45 
6V3 C7  H4  SING N N 46 
6V3 C9  H5  SING N N 47 
6V3 C10 H6  SING N N 48 
6V3 C12 H7  SING N N 49 
6V3 C12 H8  SING N N 50 
6V3 C13 H9  SING N N 51 
6V3 C13 H10 SING N N 52 
6V3 C15 H11 SING N N 53 
6V3 C15 H12 SING N N 54 
6V3 C16 H14 SING N N 55 
6V3 C16 H15 SING N N 56 
6V3 C17 H16 SING N N 57 
6V3 C17 H17 SING N N 58 
6V3 C17 H18 SING N N 59 
6V3 N18 H19 SING N N 60 
6V3 N20 H20 SING N N 61 
6V3 C23 H21 SING N N 62 
6V3 C24 H22 SING N N 63 
6V3 C26 H23 SING N N 64 
6V3 C27 H24 SING N N 65 
6V3 C30 H25 SING N N 66 
6V3 C31 H26 SING N N 67 
6V3 N35 H27 SING N N 68 
6V3 C36 H28 SING N N 69 
6V3 C37 H29 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6V3 InChI            InChI                1.03  "InChI=1S/C29H28N6O2/c1-34-15-17-35(18-16-34)26-4-2-3-20-19-22(7-10-24(20)26)33-29(36)32-21-5-8-23(9-6-21)37-27-12-14-31-28-25(27)11-13-30-28/h2-14,19H,15-18H2,1H3,(H,30,31)(H2,32,33,36)" 
6V3 InChIKey         InChI                1.03  WQRGBJPKMNUGRL-UHFFFAOYSA-N                                                                                                                                                                 
6V3 SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)c2cccc3cc(NC(=O)Nc4ccc(Oc5ccnc6[nH]ccc56)cc4)ccc23"                                                                                                                             
6V3 SMILES           CACTVS               3.385 "CN1CCN(CC1)c2cccc3cc(NC(=O)Nc4ccc(Oc5ccnc6[nH]ccc56)cc4)ccc23"                                                                                                                             
6V3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CN1CCN(CC1)c2cccc3c2ccc(c3)NC(=O)Nc4ccc(cc4)Oc5ccnc6c5cc[nH]6"                                                                                                                             
6V3 SMILES           "OpenEye OEToolkits" 2.0.5 "CN1CCN(CC1)c2cccc3c2ccc(c3)NC(=O)Nc4ccc(cc4)Oc5ccnc6c5cc[nH]6"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6V3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "1-[5-(4-methylpiperazin-1-yl)naphthalen-2-yl]-3-[4-(1~{H}-pyrrolo[2,3-b]pyridin-4-yloxy)phenyl]urea" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6V3 "Create component" 2016-07-01 PDBJ 
6V3 "Modify name"      2016-07-05 PDBJ 
6V3 "Initial release"  2016-11-16 RCSB 
# 
