data_7R3
#

_chem_comp.id                                   7R3
_chem_comp.name                                 "(2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[[4-[(3S)-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H27 Cl O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Empagliflozin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-10-14
_chem_comp.pdbx_modified_date                   2021-10-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       450.909
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7R3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7FEN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7R3  C10  C1   C   0  1  N  N  R  37.651  47.348  43.225  -4.407   0.397   0.910  C10  7R3   1  
7R3  C13  C2   C   0  1  N  N  R  40.496  47.623  42.829  -4.460  -2.111  -0.517  C13  7R3   2  
7R3  C15  C3   C   0  1  N  N  N  41.264  48.815  43.359  -4.753  -2.893  -1.799  C15  7R3   3  
7R3  C17  C4   C   0  1  Y  N  N  39.126  46.618  46.761  -2.298   1.423  -1.270  C17  7R3   4  
7R3  C20  C5   C   0  1  N  N  N  35.636  49.519  47.531   1.000   2.327   1.292  C20  7R3   5  
7R3  C21  C6   C   0  1  Y  N  N  38.829  47.095  48.196  -1.376   2.382  -1.645  C21  7R3   6  
7R3  C22  C7   C   0  1  Y  N  N  37.668  48.060  48.441  -0.307   2.674  -0.816  C22  7R3   7  
7R3  C24  C8   C   0  1  N  N  N  40.013  55.510  50.131   6.444  -1.753   1.295  C24  7R3   8  
7R3  C26  C9   C   0  1  Y  N  N  36.160  50.911  48.024   2.231   1.607   0.805  C26  7R3   9  
7R3  C28  C10  C   0  1  Y  N  N  37.060  51.742  47.117   2.514   0.335   1.268  C28  7R3  10  
7R3  C09  C11  C   0  1  N  N  R  38.226  47.260  41.896  -5.447  -0.670   1.265  C09  7R3  11  
7R3  C11  C12  C   0  1  N  N  S  39.411  48.142  41.884  -5.758  -1.500   0.017  C11  7R3  12  
7R3  C12  C13  C   0  1  N  N  S  38.576  46.629  44.202  -3.160  -0.287   0.342  C12  7R3  13  
7R3  C14  C14  C   0  1  Y  N  N  38.268  47.106  45.599  -2.155   0.759  -0.066  C14  7R3  14  
7R3  C16  C15  C   0  1  Y  N  N  37.128  48.057  45.836  -1.090   1.055   0.765  C16  7R3  15  
7R3  C18  C16  C   0  1  Y  N  N  36.822  48.540  47.275  -0.161   2.006   0.386  C18  7R3  16  
7R3  C19  C17  C   0  1  N  N  S  39.043  55.091  48.937   5.776  -1.716  -0.093  C19  7R3  17  
7R3  C23  C18  C   0  1  N  N  N  39.075  56.039  48.110   6.774  -2.456  -1.015  C23  7R3  18  
7R3  C25  C19  C   0  1  N  N  N  39.865  57.304  48.824   7.601  -3.286   0.001  C25  7R3  19  
7R3  C27  C20  C   0  1  Y  N  N  37.170  53.658  49.028   4.490   0.284  -0.088  C27  7R3  20  
7R3  C29  C21  C   0  1  Y  N  N  35.745  51.443  49.444   3.072   2.217  -0.107  C29  7R3  21  
7R3  C30  C22  C   0  1  Y  N  N  37.580  53.137  47.616   3.642  -0.327   0.823  C30  7R3  22  
7R3  C31  C23  C   0  1  Y  N  N  36.261  52.828  49.943   4.200   1.558  -0.555  C31  7R3  23  
7R3  O2   O1   O   0  1  N  N  N  40.040  46.813  43.962  -3.525  -1.067  -0.799  O2   7R3  24  
7R3  O3   O2   O   0  1  N  N  N  37.253  47.677  40.848  -6.641  -0.037   1.730  O3   7R3  25  
7R3  O4   O3   O   0  1  N  N  N  36.335  46.714  43.254  -4.055   1.131   2.084  O4   7R3  26  
7R3  O5   O4   O   0  1  N  N  N  39.957  48.189  40.565  -6.674  -2.545   0.353  O5   7R3  27  
7R3  O6   O5   O   0  1  N  N  N  42.301  48.350  44.229  -3.565  -3.557  -2.234  O6   7R3  28  
7R3  O7   O6   O   0  1  N  N  N  39.943  57.019  50.103   7.715  -2.408   1.143  O7   7R3  29  
7R3  O8   O7   O   0  1  N  N  N  37.659  54.937  49.464   5.600  -0.366  -0.527  O8   7R3  30  
7R3  CL1  CL1  CL  0  0  N  N  N  37.304  48.621  50.088   0.852   3.878  -1.286  CL1  7R3  31  
7R3  H1   H1   H   0  1  N  N  N  37.563  48.402  43.527  -4.821   1.077   0.165  H1   7R3  32  
7R3  H2   H2   H   0  1  N  N  N  41.192  47.017  42.231  -4.040  -2.783   0.231  H2   7R3  33  
7R3  H3   H3   H   0  1  N  N  N  41.708  49.371  42.520  -5.531  -3.631  -1.605  H3   7R3  34  
7R3  H4   H4   H   0  1  N  N  N  40.583  49.475  43.916  -5.090  -2.205  -2.575  H4   7R3  35  
7R3  H5   H5   H   0  1  N  N  N  39.944  45.937  46.578  -3.132   1.195  -1.917  H5   7R3  36  
7R3  H6   H6   H   0  1  N  N  N  35.073  49.656  46.596   0.768   2.006   2.307  H6   7R3  37  
7R3  H7   H7   H   0  1  N  N  N  34.974  49.091  48.298   1.180   3.402   1.283  H7   7R3  38  
7R3  H8   H8   H   0  1  N  N  N  39.435  46.751  49.021  -1.490   2.903  -2.584  H8   7R3  39  
7R3  H9   H9   H   0  1  N  N  N  39.653  55.114  51.092   6.592  -0.738   1.663  H9   7R3  40  
7R3  H10  H10  H   0  1  N  N  N  41.039  55.157  49.951   5.820  -2.312   1.992  H10  7R3  41  
7R3  H11  H11  H   0  1  N  N  N  37.338  51.375  46.140   1.853  -0.141   1.977  H11  7R3  42  
7R3  H12  H12  H   0  1  N  N  N  38.543  46.225  41.700  -5.051  -1.319   2.046  H12  7R3  43  
7R3  H13  H13  H   0  1  N  N  N  39.117  49.152  42.206  -6.200  -0.859  -0.746  H13  7R3  44  
7R3  H14  H14  H   0  1  N  N  N  38.351  45.553  44.151  -2.723  -0.935   1.101  H14  7R3  45  
7R3  H15  H15  H   0  1  N  N  N  36.526  48.401  45.008  -0.980   0.536   1.706  H15  7R3  46  
7R3  H16  H16  H   0  1  N  N  N  39.393  54.134  48.524   4.818  -2.236  -0.069  H16  7R3  47  
7R3  H17  H17  H   0  1  N  N  N  38.051  56.339  47.845   6.251  -3.107  -1.714  H17  7R3  48  
7R3  H18  H18  H   0  1  N  N  N  39.612  55.726  47.202   7.410  -1.748  -1.546  H18  7R3  49  
7R3  H19  H19  H   0  1  N  N  N  40.873  57.413  48.397   7.070  -4.199   0.272  H19  7R3  50  
7R3  H20  H20  H   0  1  N  N  N  39.301  58.237  48.676   8.585  -3.519  -0.405  H20  7R3  51  
7R3  H21  H21  H   0  1  N  N  N  35.101  50.848  50.075   2.846   3.208  -0.470  H21  7R3  52  
7R3  H22  H22  H   0  1  N  N  N  38.220  53.734  46.983   3.863  -1.321   1.186  H22  7R3  53  
7R3  H23  H23  H   0  1  N  N  N  35.982  53.197  50.919   4.860   2.036  -1.265  H23  7R3  54  
7R3  H24  H24  H   0  1  N  N  N  36.498  47.101  40.869  -7.344  -0.654   1.974  H24  7R3  55  
7R3  H25  H25  H   0  1  N  N  N  35.971  46.779  44.129  -4.798   1.591   2.498  H25  7R3  56  
7R3  H26  H26  H   0  1  N  N  N  40.719  48.756  40.557  -7.518  -2.230   0.704  H26  7R3  57  
7R3  H27  H27  H   0  1  N  N  N  42.788  49.092  44.566  -3.677  -4.074  -3.044  H27  7R3  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7R3  O5   C11  SING  N  N   1  
7R3  O3   C09  SING  N  N   2  
7R3  C11  C09  SING  N  N   3  
7R3  C11  C13  SING  N  N   4  
7R3  C09  C10  SING  N  N   5  
7R3  C13  C15  SING  N  N   6  
7R3  C13  O2   SING  N  N   7  
7R3  C10  O4   SING  N  N   8  
7R3  C10  C12  SING  N  N   9  
7R3  C15  O6   SING  N  N  10  
7R3  O2   C12  SING  N  N  11  
7R3  C12  C14  SING  N  N  12  
7R3  C14  C16  DOUB  Y  N  13  
7R3  C14  C17  SING  Y  N  14  
7R3  C16  C18  SING  Y  N  15  
7R3  C17  C21  DOUB  Y  N  16  
7R3  C28  C30  DOUB  Y  N  17  
7R3  C28  C26  SING  Y  N  18  
7R3  C18  C20  SING  N  N  19  
7R3  C18  C22  DOUB  Y  N  20  
7R3  C20  C26  SING  N  N  21  
7R3  C30  C27  SING  Y  N  22  
7R3  C26  C29  DOUB  Y  N  23  
7R3  C23  C25  SING  N  N  24  
7R3  C23  C19  SING  N  N  25  
7R3  C21  C22  SING  Y  N  26  
7R3  C22  CL1  SING  N  N  27  
7R3  C25  O7   SING  N  N  28  
7R3  C19  O8   SING  N  N  29  
7R3  C19  C24  SING  N  N  30  
7R3  C27  O8   SING  N  N  31  
7R3  C27  C31  DOUB  Y  N  32  
7R3  C29  C31  SING  Y  N  33  
7R3  O7   C24  SING  N  N  34  
7R3  C10  H1   SING  N  N  35  
7R3  C13  H2   SING  N  N  36  
7R3  C15  H3   SING  N  N  37  
7R3  C15  H4   SING  N  N  38  
7R3  C17  H5   SING  N  N  39  
7R3  C20  H6   SING  N  N  40  
7R3  C20  H7   SING  N  N  41  
7R3  C21  H8   SING  N  N  42  
7R3  C24  H9   SING  N  N  43  
7R3  C24  H10  SING  N  N  44  
7R3  C28  H11  SING  N  N  45  
7R3  C09  H12  SING  N  N  46  
7R3  C11  H13  SING  N  N  47  
7R3  C12  H14  SING  N  N  48  
7R3  C16  H15  SING  N  N  49  
7R3  C19  H16  SING  N  N  50  
7R3  C23  H17  SING  N  N  51  
7R3  C23  H18  SING  N  N  52  
7R3  C25  H19  SING  N  N  53  
7R3  C25  H20  SING  N  N  54  
7R3  C29  H21  SING  N  N  55  
7R3  C30  H22  SING  N  N  56  
7R3  C31  H23  SING  N  N  57  
7R3  O3   H24  SING  N  N  58  
7R3  O4   H25  SING  N  N  59  
7R3  O5   H26  SING  N  N  60  
7R3  O6   H27  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7R3  InChI             InChI                 1.03   "InChI=1S/C23H27ClO7/c24-18-6-3-14(23-22(28)21(27)20(26)19(11-25)31-23)10-15(18)9-13-1-4-16(5-2-13)30-17-7-8-29-12-17/h1-6,10,17,19-23,25-28H,7-9,11-12H2/t17-,19+,20+,21-,22+,23-/m0/s1"  
7R3  InChIKey          InChI                 1.03   OBWASQILIWPZMG-QZMOQZSNSA-N  
7R3  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2ccc(Cl)c(Cc3ccc(O[C@H]4CCOC4)cc3)c2"  
7R3  SMILES            CACTVS                3.385  "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2ccc(Cl)c(Cc3ccc(O[CH]4CCOC4)cc3)c2"  
7R3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1Cc2cc(ccc2Cl)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O[C@H]4CCOC4"  
7R3  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1Cc2cc(ccc2Cl)C3C(C(C(C(O3)CO)O)O)O)OC4CCOC4"  
#
_pdbx_chem_comp_identifier.comp_id          7R3
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{R},4~{R},5~{S},6~{R})-2-[4-chloranyl-3-[[4-[(3~{S})-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     7R3
_pdbx_chem_comp_synonyms.name        Empagliflozin
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7R3  "Create component"  2021-10-14  PDBJ  
7R3  "Initial release"   2021-10-27  RCSB  
##
