data_K53
#

_chem_comp.id                                   K53
_chem_comp.name                                 
;(5S)-N-{(1S,2R)-3-[(1,3-benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-1-benzyl-2-hydroxypropyl}-3-(2-hydroxyphenyl)-2
-oxo-1,3-oxazolidine-5-carboxamide
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C31 H35 N3 O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(5S)-N-[(1S,2R)-3-[(1,3-Benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-2-hydroxy-1-(phenylmethyl)propyl]-3-(2-hydroxyp
henyl)-2-oxooxazolidine-5-carboxamide
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-05-12
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       625.689
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K53
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3MXD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K53  C2    C2    C  0  1  Y  N  N  15.594  34.628  17.578   1.415   4.342  -0.603  C2    K53   1  
K53  C3    C3    C  0  1  Y  N  N  16.583  35.270  16.893   0.920   3.421   0.316  C3    K53   2  
K53  C4    C4    C  0  1  Y  N  N  17.385  34.592  15.982   1.760   2.451   0.840  C4    K53   3  
K53  C5    C5    C  0  1  Y  N  N  17.188  33.220  15.769   3.085   2.399   0.449  C5    K53   4  
K53  C6    C6    C  0  1  Y  N  N  16.167  32.570  16.485   3.576   3.314  -0.463  C6    K53   5  
K53  C7    C7    C  0  1  Y  N  N  15.359  33.275  17.400   2.744   4.284  -0.990  C7    K53   6  
K53  S8    S8    S  0  1  N  N  N  18.132  32.395  14.733   4.150   1.164   1.116  S8    K53   7  
K53  O9    O9    O  0  1  N  N  N  17.407  31.306  14.144   5.473   1.668   0.996  O9    K53   8  
K53  O10   O10   O  0  1  N  N  N  18.661  33.266  13.725   3.579   0.768   2.355  O10   K53   9  
K53  N11   N11   N  0  1  N  N  N  19.417  31.728  15.468   4.060  -0.153   0.117  N11   K53  10  
K53  C12   C12   C  0  1  N  N  N  20.159  32.699  16.317   4.981  -0.279  -1.015  C12   K53  11  
K53  C13   C13   C  0  1  N  N  N  21.666  32.411  16.299   6.183  -1.132  -0.603  C13   K53  12  
K53  C14   C14   C  0  1  N  N  N  22.249  32.390  14.883   7.082  -1.367  -1.818  C14   K53  13  
K53  C15   C15   C  0  1  N  N  N  22.409  33.418  17.183   6.975  -0.404   0.486  C15   K53  14  
K53  C16   C16   C  0  1  N  N  N  19.104  30.462  16.177   3.058  -1.193   0.365  C16   K53  15  
K53  C17   C17   C  0  1  N  N  R  20.024  29.367  15.618   1.817  -0.919  -0.487  C17   K53  16  
K53  C18   C18   C  0  1  N  N  N  15.629  36.802  18.274  -0.812   4.512  -0.575  C18   K53  17  
K53  O18   O18   O  0  1  N  N  N  19.974  28.215  16.476   2.153  -1.040  -1.871  O18   K53  18  
K53  C19   C19   C  0  1  N  N  S  19.690  28.993  14.171   0.725  -1.932  -0.137  C19   K53  19  
K53  O19   O19   O  0  1  N  N  N  14.979  35.516  18.407   0.402   5.181  -0.968  O19   K53  20  
K53  N20   N20   N  0  1  N  N  N  20.797  28.228  13.603  -0.502  -1.597  -0.864  N20   K53  21  
K53  C21   C21   C  0  1  N  N  N  21.554  28.634  12.573  -1.699  -1.986  -0.381  C21   K53  22  
K53  O22   O22   O  0  1  N  N  N  21.453  29.731  12.045  -1.760  -2.612   0.656  O22   K53  23  
K53  N24   N24   N  0  1  N  N  N  22.540  26.159  10.240  -4.454   0.070  -0.450  N24   K53  24  
K53  C25   C25   C  0  1  N  N  N  22.621  27.595  10.519  -3.176  -0.116  -1.153  C25   K53  25  
K53  C26   C26   C  0  1  N  N  N  22.300  25.465  11.338  -4.920  -1.129  -0.073  C26   K53  26  
K53  O27   O27   O  0  1  N  N  N  22.206  24.253  11.427  -5.964  -1.275   0.530  O27   K53  27  
K53  O28   O28   O  0  1  N  N  N  22.220  26.324  12.474  -4.129  -2.150  -0.421  O28   K53  28  
K53  C29   C29   C  0  1  N  N  S  22.572  27.653  12.049  -2.961  -1.641  -1.129  C29   K53  29  
K53  O29   O29   O  0  1  N  N  N  16.605  36.594  17.246  -0.402   3.685   0.531  O29   K53  30  
K53  C32   C32   C  0  1  N  N  N  18.364  28.229  14.037   1.185  -3.336  -0.533  C32   K53  31  
K53  C33   C33   C  0  1  Y  N  N  18.527  26.604  12.123  -0.877  -4.703  -0.915  C33   K53  32  
K53  C34   C34   C  0  1  Y  N  N  18.385  26.274  10.787  -1.814  -5.629  -0.497  C34   K53  33  
K53  C35   C35   C  0  1  Y  N  N  17.868  27.209   9.900  -1.710  -6.200   0.758  C35   K53  34  
K53  C36   C36   C  0  1  Y  N  N  17.512  28.475  10.352  -0.669  -5.844   1.595  C36   K53  35  
K53  C37   C37   C  0  1  Y  N  N  17.654  28.802  11.692   0.268  -4.917   1.178  C37   K53  36  
K53  C38   C38   C  0  1  Y  N  N  18.163  27.869  12.583   0.164  -4.346  -0.077  C38   K53  37  
K53  C40   C40   C  0  1  Y  N  N  23.292  24.437   6.516  -6.318   3.732   0.269  C40   K53  38  
K53  C41   C41   C  0  1  Y  N  N  24.298  24.514   7.480  -5.424   3.224   1.193  C41   K53  39  
K53  C42   C42   C  0  1  Y  N  N  24.032  25.100   8.718  -4.802   2.008   0.959  C42   K53  40  
K53  C43   C43   C  0  1  Y  N  N  22.768  25.582   8.987  -5.080   1.300  -0.208  C43   K53  41  
K53  C44   C44   C  0  1  Y  N  N  21.759  25.510   8.027  -5.978   1.817  -1.131  C44   K53  42  
K53  C45   C45   C  0  1  Y  N  N  22.015  24.931   6.795  -6.594   3.031  -0.890  C45   K53  43  
K53  O46   O46   O  0  1  N  N  N  25.007  25.183   9.675  -3.923   1.506   1.867  O46   K53  44  
K53  H4    H4    H  0  1  N  N  N  18.156  35.120  15.441   1.379   1.735   1.553  H4    K53  45  
K53  H6    H6    H  0  1  N  N  N  15.999  31.514  16.331   4.612   3.271  -0.766  H6    K53  46  
K53  H7    H7    H  0  1  N  N  N  14.576  32.772  17.949   3.130   4.997  -1.703  H7    K53  47  
K53  H12   H12   H  0  1  N  N  N  19.985  33.715  15.932   4.468  -0.755  -1.851  H12   K53  48  
K53  H12A  H12A  H  0  0  N  N  N  19.793  32.621  17.351   5.325   0.711  -1.316  H12A  K53  49  
K53  H13   H13   H  0  1  N  N  N  21.808  31.400  16.708   5.833  -2.090  -0.218  H13   K53  50  
K53  H14   H14   H  0  1  N  N  N  23.328  32.180  14.933   7.432  -0.409  -2.202  H14   K53  51  
K53  H14A  H14A  H  0  0  N  N  N  21.750  31.607  14.293   7.938  -1.975  -1.524  H14A  K53  52  
K53  H14B  H14B  H  0  0  N  N  N  22.088  33.368  14.406   6.518  -1.885  -2.593  H14B  K53  53  
K53  H15   H15   H  0  1  N  N  N  23.487  33.200  17.161   7.325   0.554   0.101  H15   K53  54  
K53  H15A  H15A  H  0  0  N  N  N  22.233  34.436  16.806   6.334  -0.237   1.351  H15A  K53  55  
K53  H15B  H15B  H  0  0  N  N  N  22.040  33.340  18.216   7.831  -1.012   0.779  H15B  K53  56  
K53  H16   H16   H  0  1  N  N  N  19.277  30.583  17.257   3.472  -2.167   0.101  H16   K53  57  
K53  H16A  H16A  H  0  0  N  N  N  18.051  30.189  16.012   2.783  -1.189   1.419  H16A  K53  58  
K53  H17   H17   H  0  1  N  N  N  21.049  29.767  15.599   1.455   0.089  -0.288  H17   K53  59  
K53  H18   H18   H  0  1  N  N  N  14.911  37.586  17.991  -1.561   5.235  -0.254  H18   K53  60  
K53  H18A  H18A  H  0  0  N  N  N  16.102  37.111  19.218  -1.194   3.901  -1.393  H18A  K53  61  
K53  HO18  HO18  H  0  0  N  N  N  20.543  27.537  16.130   2.483  -1.914  -2.121  HO18  K53  62  
K53  H19   H19   H  0  1  N  N  N  19.554  29.928  13.607   0.531  -1.901   0.935  H19   K53  63  
K53  HN20  HN20  H  0  0  N  N  N  21.005  27.339  14.011  -0.454  -1.096  -1.693  HN20  K53  64  
K53  H25   H25   H  0  1  N  N  N  23.550  28.034  10.125  -3.248   0.244  -2.180  H25   K53  65  
K53  H25A  H25A  H  0  0  N  N  N  21.784  28.145  10.065  -2.370   0.393  -0.624  H25A  K53  66  
K53  H29   H29   H  0  1  N  N  N  23.543  27.993  12.438  -2.924  -2.038  -2.143  H29   K53  67  
K53  H32   H32   H  0  1  N  N  N  18.398  27.314  14.646   1.293  -3.391  -1.616  H32   K53  68  
K53  H32A  H32A  H  0  0  N  N  N  17.533  28.861  14.383   2.144  -3.550  -0.061  H32A  K53  69  
K53  H33   H33   H  0  1  N  N  N  18.923  25.876  12.815  -0.955  -4.261  -1.897  H33   K53  70  
K53  H34   H34   H  0  1  N  N  N  18.675  25.295  10.436  -2.627  -5.907  -1.151  H34   K53  71  
K53  H35   H35   H  0  1  N  N  N  17.742  26.953   8.858  -2.443  -6.923   1.085  H35   K53  72  
K53  H36   H36   H  0  1  N  N  N  17.124  29.205   9.658  -0.589  -6.288   2.576  H36   K53  73  
K53  H37   H37   H  0  1  N  N  N  17.368  29.783  12.042   1.081  -4.638   1.832  H37   K53  74  
K53  H40   H40   H  0  1  N  N  N  23.501  23.995   5.553  -6.804   4.678   0.455  H40   K53  75  
K53  H41   H41   H  0  1  N  N  N  25.281  24.121   7.268  -5.210   3.774   2.097  H41   K53  76  
K53  H44   H44   H  0  1  N  N  N  20.778  25.906   8.244  -6.195   1.271  -2.037  H44   K53  77  
K53  H45   H45   H  0  1  N  N  N  21.232  24.862   6.054  -7.293   3.432  -1.609  H45   K53  78  
K53  HO46  HO46  H  0  0  N  N  N  24.656  25.607  10.449  -4.330   0.944   2.540  HO46  K53  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K53  C2   C3    DOUB  Y  N   1  
K53  C2   C7    SING  Y  N   2  
K53  C2   O19   SING  N  N   3  
K53  C3   C4    SING  Y  N   4  
K53  C3   O29   SING  N  N   5  
K53  C4   C5    DOUB  Y  N   6  
K53  C5   C6    SING  Y  N   7  
K53  C5   S8    SING  N  N   8  
K53  C6   C7    DOUB  Y  N   9  
K53  S8   O9    DOUB  N  N  10  
K53  S8   O10   DOUB  N  N  11  
K53  S8   N11   SING  N  N  12  
K53  N11  C12   SING  N  N  13  
K53  N11  C16   SING  N  N  14  
K53  C12  C13   SING  N  N  15  
K53  C13  C14   SING  N  N  16  
K53  C13  C15   SING  N  N  17  
K53  C16  C17   SING  N  N  18  
K53  C17  O18   SING  N  N  19  
K53  C17  C19   SING  N  N  20  
K53  C18  O19   SING  N  N  21  
K53  C18  O29   SING  N  N  22  
K53  C19  N20   SING  N  N  23  
K53  C19  C32   SING  N  N  24  
K53  N20  C21   SING  N  N  25  
K53  C21  O22   DOUB  N  N  26  
K53  C21  C29   SING  N  N  27  
K53  N24  C25   SING  N  N  28  
K53  N24  C26   SING  N  N  29  
K53  N24  C43   SING  N  N  30  
K53  C25  C29   SING  N  N  31  
K53  C26  O27   DOUB  N  N  32  
K53  C26  O28   SING  N  N  33  
K53  O28  C29   SING  N  N  34  
K53  C32  C38   SING  N  N  35  
K53  C33  C34   DOUB  Y  N  36  
K53  C33  C38   SING  Y  N  37  
K53  C34  C35   SING  Y  N  38  
K53  C35  C36   DOUB  Y  N  39  
K53  C36  C37   SING  Y  N  40  
K53  C37  C38   DOUB  Y  N  41  
K53  C40  C41   DOUB  Y  N  42  
K53  C40  C45   SING  Y  N  43  
K53  C41  C42   SING  Y  N  44  
K53  C42  C43   DOUB  Y  N  45  
K53  C42  O46   SING  N  N  46  
K53  C43  C44   SING  Y  N  47  
K53  C44  C45   DOUB  Y  N  48  
K53  C4   H4    SING  N  N  49  
K53  C6   H6    SING  N  N  50  
K53  C7   H7    SING  N  N  51  
K53  C12  H12   SING  N  N  52  
K53  C12  H12A  SING  N  N  53  
K53  C13  H13   SING  N  N  54  
K53  C14  H14   SING  N  N  55  
K53  C14  H14A  SING  N  N  56  
K53  C14  H14B  SING  N  N  57  
K53  C15  H15   SING  N  N  58  
K53  C15  H15A  SING  N  N  59  
K53  C15  H15B  SING  N  N  60  
K53  C16  H16   SING  N  N  61  
K53  C16  H16A  SING  N  N  62  
K53  C17  H17   SING  N  N  63  
K53  C18  H18   SING  N  N  64  
K53  C18  H18A  SING  N  N  65  
K53  O18  HO18  SING  N  N  66  
K53  C19  H19   SING  N  N  67  
K53  N20  HN20  SING  N  N  68  
K53  C25  H25   SING  N  N  69  
K53  C25  H25A  SING  N  N  70  
K53  C29  H29   SING  N  N  71  
K53  C32  H32   SING  N  N  72  
K53  C32  H32A  SING  N  N  73  
K53  C33  H33   SING  N  N  74  
K53  C34  H34   SING  N  N  75  
K53  C35  H35   SING  N  N  76  
K53  C36  H36   SING  N  N  77  
K53  C37  H37   SING  N  N  78  
K53  C40  H40   SING  N  N  79  
K53  C41  H41   SING  N  N  80  
K53  C44  H44   SING  N  N  81  
K53  C45  H45   SING  N  N  82  
K53  O46  HO46  SING  N  N  83  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K53  SMILES            ACDLabs               12.01  "O=C(NC(Cc1ccccc1)C(O)CN(CC(C)C)S(=O)(=O)c3cc2OCOc2cc3)C5OC(=O)N(c4c(O)cccc4)C5"  
K53  SMILES_CANONICAL  CACTVS                3.370  "CC(C)CN(C[C@@H](O)[C@H](Cc1ccccc1)NC(=O)[C@@H]2CN(C(=O)O2)c3ccccc3O)[S](=O)(=O)c4ccc5OCOc5c4"  
K53  SMILES            CACTVS                3.370  "CC(C)CN(C[CH](O)[CH](Cc1ccccc1)NC(=O)[CH]2CN(C(=O)O2)c3ccccc3O)[S](=O)(=O)c4ccc5OCOc5c4"  
K53  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CC(C)C[N@@](C[C@H]([C@H](Cc1ccccc1)NC(=O)[C@@H]2CN(C(=O)O2)c3ccccc3O)O)S(=O)(=O)c4ccc5c(c4)OCO5"  
K53  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(C)CN(CC(C(Cc1ccccc1)NC(=O)C2CN(C(=O)O2)c3ccccc3O)O)S(=O)(=O)c4ccc5c(c4)OCO5"  
K53  InChI             InChI                 1.03   "InChI=1S/C31H35N3O9S/c1-20(2)16-33(44(39,40)22-12-13-27-28(15-22)42-19-41-27)17-26(36)23(14-21-8-4-3-5-9-21)32-30(37)29-18-34(31(38)43-29)24-10-6-7-11-25(24)35/h3-13,15,20,23,26,29,35-36H,14,16-19H2,1-2H3,(H,32,37)/t23-,26+,29-/m0/s1"  
K53  InChIKey          InChI                 1.03   ACRHTKSQCOUKAC-LBGGBARHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
K53  "SYSTEMATIC NAME"  ACDLabs               12.01  "(5S)-N-{(2S,3R)-4-[(1,3-benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}-3-(2-hydroxyphenyl)-2-oxo-1,3-oxazolidine-5-carboxamide"  
K53  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(5S)-N-[(2S,3R)-4-[1,3-benzodioxol-5-ylsulfonyl(2-methylpropyl)amino]-3-hydroxy-1-phenyl-butan-2-yl]-3-(2-hydroxyphenyl)-2-oxo-1,3-oxazolidine-5-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K53  "Create component"      2010-05-12  RCSB  
K53  "Modify aromatic_flag"  2011-06-04  RCSB  
K53  "Modify descriptor"     2011-06-04  RCSB  
K53  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     K53
_pdbx_chem_comp_synonyms.name        "(5S)-N-[(1S,2R)-3-[(1,3-Benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-2-hydroxy-1-(phenylmethyl)propyl]-3-(2-hydroxyphenyl)-2-oxooxazolidine-5-carboxamide"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
