data_KH3
# 
_chem_comp.id                                    KH3 
_chem_comp.name                                  "5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H38 N8 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-08-01 
_chem_comp.pdbx_modified_date                    2013-03-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        494.588 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KH3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VV0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KH3 O     O     O 0 1 N N N -38.722 6.128  -22.689 0.421   -4.206 -1.749 O     KH3 1  
KH3 C     C     C 0 1 N N N -38.245 5.480  -21.726 -0.622  -3.782 -1.310 C     KH3 2  
KH3 CA    CA    C 0 1 N N S -38.149 3.980  -21.834 -0.613  -2.731 -0.230 CA    KH3 3  
KH3 N     N     N 0 1 N N N -38.466 3.559  -23.190 0.692   -2.733 0.444  N     KH3 4  
KH3 CB    CB    C 0 1 N N N -36.734 3.532  -21.479 -0.863  -1.357 -0.853 CB    KH3 5  
KH3 CG    CG    C 0 1 N N N -36.690 2.063  -21.086 -0.952  -0.303 0.253  CG    KH3 6  
KH3 ND    ND    N 0 1 N N N -37.450 1.933  -19.840 -1.333  0.989  -0.331 ND    KH3 7  
KH3 CE    CE    C 0 1 N N N -36.481 1.969  -18.748 -2.690  0.935  -0.891 CE    KH3 8  
KH3 C11   C11   C 0 1 N N N -36.150 0.556  -18.300 -3.710  0.868  0.248  C11   KH3 9  
KH3 N12   N12   N 0 1 N N N -34.973 0.449  -17.428 -5.059  0.712  -0.311 N12   KH3 10 
KH3 C13   C13   C 0 1 N N N -35.003 -0.957 -16.965 -6.066  0.644  0.756  C13   KH3 11 
KH3 C14   C14   C 0 1 N N N -33.726 -1.393 -16.263 -7.456  0.482  0.136  C14   KH3 12 
KH3 C15   C15   C 0 1 N N N -33.944 -2.678 -15.470 -8.505  0.411  1.248  C15   KH3 13 
KH3 C16   C16   C 0 1 N N N -34.176 -3.876 -16.379 -9.894  0.249  0.628  C16   KH3 14 
KH3 C17   C17   C 0 1 N N N -34.209 -5.170 -15.571 -10.943 0.178  1.740  C17   KH3 15 
KH3 C18   C18   C 0 1 N N N -32.819 -5.635 -15.198 -12.333 0.016  1.120  C18   KH3 16 
KH3 "C5'" "C5'" C 0 1 N N N -38.230 0.679  -19.798 -0.361  1.415  -1.347 "C5'" KH3 17 
KH3 "C4'" "C4'" C 0 1 N N R -39.673 1.051  -20.081 0.889   1.966  -0.658 "C4'" KH3 18 
KH3 "O4'" "O4'" O 0 1 N N N -39.782 1.275  -21.489 1.649   0.892  -0.062 "O4'" KH3 19 
KH3 "C1'" "C1'" C 0 1 N N R -40.844 0.493  -22.037 2.984   1.417  0.104  "C1'" KH3 20 
KH3 "C2'" "C2'" C 0 1 N N R -41.694 0.093  -20.854 3.253   2.226  -1.185 "C2'" KH3 21 
KH3 "O2'" "O2'" O 0 1 N N N -42.600 1.166  -20.584 4.003   3.405  -0.889 "O2'" KH3 22 
KH3 "C3'" "C3'" C 0 1 N N S -40.686 -0.030 -19.739 1.843   2.595  -1.698 "C3'" KH3 23 
KH3 "O3'" "O3'" O 0 1 N N N -41.311 0.207  -18.474 1.679   4.014  -1.734 "O3'" KH3 24 
KH3 N9    N9    N 0 1 Y N N -40.279 -0.709 -22.691 3.950   0.323  0.230  N9    KH3 25 
KH3 C8    C8    C 0 1 Y N N -39.043 -1.217 -22.525 3.809   -0.939 -0.264 C8    KH3 26 
KH3 N7    N7    N 0 1 Y N N -38.860 -2.311 -23.302 4.857   -1.652 0.031  N7    KH3 27 
KH3 C5    C5    C 0 1 Y N N -39.997 -2.515 -23.987 5.735   -0.895 0.731  C5    KH3 28 
KH3 C6    C6    C 0 1 Y N N -40.481 -3.500 -24.979 7.002   -1.118 1.295  C6    KH3 29 
KH3 N6    N6    N 0 1 N N N -39.686 -4.514 -25.404 7.613   -2.356 1.197  N6    KH3 30 
KH3 C4    C4    C 0 1 Y N N -40.926 -1.449 -23.588 5.166   0.384  0.863  C4    KH3 31 
KH3 N3    N3    N 0 1 Y N N -42.167 -1.416 -24.126 5.838   1.325  1.517  N3    KH3 32 
KH3 C2    C2    C 0 1 Y N N -42.542 -2.340 -25.024 7.020   1.068  2.037  C2    KH3 33 
KH3 N1    N1    N 0 1 Y N N -41.742 -3.340 -25.440 7.601   -0.113 1.925  N1    KH3 34 
KH3 OXT   OXT   O 0 1 N N N -37.853 6.022  -20.666 -1.788  -4.243 -1.789 OXT   KH3 35 
KH3 H1    H1    H 0 1 N N N -38.855 3.522  -21.126 -1.397  -2.949 0.495  H1    KH3 36 
KH3 H2    H2    H 0 1 N N N -38.400 2.563  -23.254 0.883   -3.632 0.861  H2    KH3 37 
KH3 H3    H3    H 0 1 N N N -39.396 3.847  -23.420 1.428   -2.466 -0.192 H3    KH3 38 
KH3 H5    H5    H 0 1 N N N -36.082 3.687  -22.351 -0.043  -1.108 -1.526 H5    KH3 39 
KH3 H6    H6    H 0 1 N N N -36.369 4.137  -20.636 -1.798  -1.376 -1.413 H6    KH3 40 
KH3 H7    H7    H 0 1 N N N -37.147 1.447  -21.874 -1.702  -0.607 0.984  H7    KH3 41 
KH3 H8    H8    H 0 1 N N N -35.649 1.744  -20.929 0.016   -0.209 0.744  H8    KH3 42 
KH3 H10   H10   H 0 1 N N N -35.562 2.466  -19.092 -2.872  1.827  -1.490 H10   KH3 43 
KH3 H11   H11   H 0 1 N N N -36.906 2.529  -17.902 -2.789  0.050  -1.519 H11   KH3 44 
KH3 H12   H12   H 0 1 N N N -37.018 0.157  -17.755 -3.481  0.018  0.890  H12   KH3 45 
KH3 H13   H13   H 0 1 N N N -35.969 -0.054 -19.197 -3.662  1.787  0.832  H13   KH3 46 
KH3 H14   H14   H 0 1 N N N -34.134 0.638  -17.938 -5.270  1.455  -0.960 H14   KH3 47 
KH3 H16   H16   H 0 1 N N N -35.843 -1.075 -16.264 -5.855  -0.208 1.402  H16   KH3 48 
KH3 H17   H17   H 0 1 N N N -35.160 -1.608 -17.838 -6.035  1.562  1.344  H17   KH3 49 
KH3 H18   H18   H 0 1 N N N -32.943 -1.565 -17.016 -7.667  1.334  -0.509 H18   KH3 50 
KH3 H19   H19   H 0 1 N N N -33.405 -0.597 -15.575 -7.486  -0.436 -0.451 H19   KH3 51 
KH3 H20   H20   H 0 1 N N N -34.822 -2.550 -14.820 -8.293  -0.441 1.893  H20   KH3 52 
KH3 H21   H21   H 0 1 N N N -33.055 -2.869 -14.851 -8.474  1.329  1.836  H21   KH3 53 
KH3 H22   H22   H 0 1 N N N -33.362 -3.932 -17.117 -10.106 1.101  -0.018 H22   KH3 54 
KH3 H23   H23   H 0 1 N N N -35.136 -3.752 -16.901 -9.925  -0.669 0.040  H23   KH3 55 
KH3 H24   H24   H 0 1 N N N -34.787 -5.000 -14.650 -10.732 -0.674 2.385  H24   KH3 56 
KH3 H25   H25   H 0 1 N N N -34.697 -5.952 -16.171 -10.912 1.095  2.327  H25   KH3 57 
KH3 H26   H26   H 0 1 N N N -32.887 -6.567 -14.618 -13.080 -0.035 1.911  H26   KH3 58 
KH3 H27   H27   H 0 1 N N N -32.235 -5.814 -16.113 -12.544 0.868  0.474  H27   KH3 59 
KH3 H28   H28   H 0 1 N N N -32.324 -4.862 -14.592 -12.363 -0.902 0.532  H28   KH3 60 
KH3 H29   H29   H 0 1 N N N -38.147 0.214  -18.805 -0.088  0.562  -1.968 H29   KH3 61 
KH3 H30   H30   H 0 1 N N N -37.863 -0.021 -20.563 -0.804  2.191  -1.971 H30   KH3 62 
KH3 H31   H31   H 0 1 N N N -39.924 1.968  -19.527 0.612   2.701  0.097  H31   KH3 63 
KH3 H32   H32   H 0 1 N N N -41.442 1.076  -22.752 3.030   2.068  0.976  H32   KH3 64 
KH3 H33   H33   H 0 1 N N N -42.210 -0.861 -21.036 3.780   1.613  -1.917 H33   KH3 65 
KH3 H34   H34   H 0 1 N N N -43.148 0.939  -19.842 4.200   3.951  -1.663 H34   KH3 66 
KH3 H35   H35   H 0 1 N N N -40.206 -1.019 -19.769 1.670   2.164  -2.684 H35   KH3 67 
KH3 H36   H36   H 0 1 N N N -40.666 0.127  -17.781 2.254   4.460  -2.370 H36   KH3 68 
KH3 H37   H37   H 0 1 N N N -38.297 -0.807 -21.861 2.953   -1.296 -0.818 H37   KH3 69 
KH3 H38   H38   H 0 1 N N N -40.182 -5.070 -26.071 7.166   -3.082 0.734  H38   KH3 70 
KH3 H39   H39   H 0 1 N N N -38.864 -4.137 -25.831 8.488   -2.498 1.591  H39   KH3 71 
KH3 H40   H40   H 0 1 N N N -43.539 -2.278 -25.435 7.540   1.855  2.562  H40   KH3 72 
KH3 H41   H41   H 0 1 N N N -37.978 6.962  -20.725 -1.743  -4.913 -2.484 H41   KH3 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KH3 N1    C2    DOUB Y N 1  
KH3 N1    C6    SING Y N 2  
KH3 N6    C6    SING N N 3  
KH3 C2    N3    SING Y N 4  
KH3 C6    C5    DOUB Y N 5  
KH3 N3    C4    DOUB Y N 6  
KH3 C5    C4    SING Y N 7  
KH3 C5    N7    SING Y N 8  
KH3 C4    N9    SING Y N 9  
KH3 N7    C8    DOUB Y N 10 
KH3 N     CA    SING N N 11 
KH3 N9    C8    SING Y N 12 
KH3 N9    "C1'" SING N N 13 
KH3 O     C     DOUB N N 14 
KH3 "C1'" "O4'" SING N N 15 
KH3 "C1'" "C2'" SING N N 16 
KH3 CA    C     SING N N 17 
KH3 CA    CB    SING N N 18 
KH3 C     OXT   SING N N 19 
KH3 "O4'" "C4'" SING N N 20 
KH3 CB    CG    SING N N 21 
KH3 CG    ND    SING N N 22 
KH3 "C2'" "O2'" SING N N 23 
KH3 "C2'" "C3'" SING N N 24 
KH3 "C4'" "C5'" SING N N 25 
KH3 "C4'" "C3'" SING N N 26 
KH3 ND    "C5'" SING N N 27 
KH3 ND    CE    SING N N 28 
KH3 "C3'" "O3'" SING N N 29 
KH3 CE    C11   SING N N 30 
KH3 C11   N12   SING N N 31 
KH3 N12   C13   SING N N 32 
KH3 C13   C14   SING N N 33 
KH3 C16   C17   SING N N 34 
KH3 C16   C15   SING N N 35 
KH3 C14   C15   SING N N 36 
KH3 C17   C18   SING N N 37 
KH3 CA    H1    SING N N 38 
KH3 N     H2    SING N N 39 
KH3 N     H3    SING N N 40 
KH3 CB    H5    SING N N 41 
KH3 CB    H6    SING N N 42 
KH3 CG    H7    SING N N 43 
KH3 CG    H8    SING N N 44 
KH3 CE    H10   SING N N 45 
KH3 CE    H11   SING N N 46 
KH3 C11   H12   SING N N 47 
KH3 C11   H13   SING N N 48 
KH3 N12   H14   SING N N 49 
KH3 C13   H16   SING N N 50 
KH3 C13   H17   SING N N 51 
KH3 C14   H18   SING N N 52 
KH3 C14   H19   SING N N 53 
KH3 C15   H20   SING N N 54 
KH3 C15   H21   SING N N 55 
KH3 C16   H22   SING N N 56 
KH3 C16   H23   SING N N 57 
KH3 C17   H24   SING N N 58 
KH3 C17   H25   SING N N 59 
KH3 C18   H26   SING N N 60 
KH3 C18   H27   SING N N 61 
KH3 C18   H28   SING N N 62 
KH3 "C5'" H29   SING N N 63 
KH3 "C5'" H30   SING N N 64 
KH3 "C4'" H31   SING N N 65 
KH3 "C1'" H32   SING N N 66 
KH3 "C2'" H33   SING N N 67 
KH3 "O2'" H34   SING N N 68 
KH3 "C3'" H35   SING N N 69 
KH3 "O3'" H36   SING N N 70 
KH3 C8    H37   SING N N 71 
KH3 N6    H38   SING N N 72 
KH3 N6    H39   SING N N 73 
KH3 C2    H40   SING N N 74 
KH3 OXT   H41   SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KH3 SMILES           ACDLabs              12.01 "O=C(O)C(N)CCN(CCNCCCCCC)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O" 
KH3 InChI            InChI                1.03  
"InChI=1S/C22H38N8O5/c1-2-3-4-5-7-25-8-10-29(9-6-14(23)22(33)34)11-15-17(31)18(32)21(35-15)30-13-28-16-19(24)26-12-27-20(16)30/h12-15,17-18,21,25,31-32H,2-11,23H2,1H3,(H,33,34)(H2,24,26,27)/t14-,15+,17+,18+,21+/m0/s1" 
KH3 InChIKey         InChI                1.03  XWQXPIOHEBRBJA-UQEZQTQMSA-N 
KH3 SMILES_CANONICAL CACTVS               3.370 "CCCCCCNCCN(CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 
KH3 SMILES           CACTVS               3.370 "CCCCCCNCCN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 
KH3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCCNCCN(CC[C@@H](C(=O)O)N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 
KH3 SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCCCNCCN(CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KH3 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine"                                                     
KH3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[2-(hexylamino)ethyl]amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KH3 "Create component" 2012-08-01 PDBJ 
KH3 "Initial release"  2013-03-27 RCSB 
# 
