data_KS3
# 
_chem_comp.id                                    KS3 
_chem_comp.name                                  "(2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(3-naphthalen-2-yl-1~{H}-1,2,4-triazol-5-yl)oxane-3,4,5-triol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H19 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-08-19 
_chem_comp.pdbx_modified_date                    2017-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        357.361 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KS3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LRF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KS3 "O6'" O1  O 0 1 N N N 33.305 18.778 27.298 4.326  3.479  0.024  "O6'" KS3 1  
KS3 "C6'" C1  C 0 1 N N N 32.247 19.500 27.921 4.569  2.362  -0.834 "C6'" KS3 2  
KS3 "C5'" C2  C 0 1 N N R 32.359 20.986 27.586 4.239  1.067  -0.090 "C5'" KS3 3  
KS3 "C4'" C3  C 0 1 N N S 32.367 21.271 26.077 4.615  -0.133 -0.963 "C4'" KS3 4  
KS3 "O4'" O2  O 0 1 N N N 31.356 20.636 25.302 6.024  -0.125 -1.205 "O4'" KS3 5  
KS3 "O5'" O3  O 0 1 N N N 33.496 21.558 28.208 2.839  1.025  0.197  "O5'" KS3 6  
KS3 "C1'" C4  C 0 1 N N S 33.586 22.967 27.950 2.426  -0.138 0.916  "C1'" KS3 7  
KS3 "C2'" C5  C 0 1 N N R 33.903 23.194 26.468 2.729  -1.387 0.084  "C2'" KS3 8  
KS3 "O2'" O4  O 0 1 N N N 34.005 24.595 26.169 2.369  -2.554 0.824  "O2'" KS3 9  
KS3 "C3'" C6  C 0 1 N N R 32.769 22.651 25.607 4.227  -1.425 -0.238 "C3'" KS3 10 
KS3 "O3'" O5  O 0 1 N N N 33.025 22.687 24.205 4.507  -2.547 -1.076 "O3'" KS3 11 
KS3 C1    C7  C 0 1 Y N N 34.684 23.471 28.801 0.945  -0.062 1.186  C1    KS3 12 
KS3 N2    N1  N 0 1 Y N N 35.983 23.385 28.490 0.370  0.041  2.398  N2    KS3 13 
KS3 N3    N2  N 0 1 Y N N 36.755 23.916 29.506 -1.017 0.082  2.179  N3    KS3 14 
KS3 C4    C8  C 0 1 Y N N 35.871 24.343 30.413 -1.197 0.003  0.879  C4    KS3 15 
KS3 N5    N3  N 0 1 Y N N 34.590 24.060 30.008 0.001  -0.079 0.284  N5    KS3 16 
KS3 C6    C9  C 0 1 Y N N 36.273 24.952 31.689 -2.509 0.008  0.185  C6    KS3 17 
KS3 C7    C10 C 0 1 Y N N 37.597 25.343 31.848 -3.673 0.103  0.923  C7    KS3 18 
KS3 C8    C11 C 0 1 Y N N 37.963 25.904 33.053 -4.911 0.108  0.262  C8    KS3 19 
KS3 C12   C12 C 0 1 Y N N 39.265 26.310 33.247 -6.117 0.204  0.978  C12   KS3 20 
KS3 C13   C13 C 0 1 Y N N 39.640 26.821 34.481 -7.301 0.207  0.305  C13   KS3 21 
KS3 C14   C14 C 0 1 Y N N 38.722 26.937 35.516 -7.336 0.116  -1.084 C14   KS3 22 
KS3 C15   C15 C 0 1 Y N N 37.387 26.549 35.366 -6.188 0.022  -1.811 C15   KS3 23 
KS3 C9    C16 C 0 1 Y N N 36.985 26.026 34.141 -4.947 0.016  -1.153 C9    KS3 24 
KS3 C10   C17 C 0 1 Y N N 35.679 25.596 33.956 -3.743 -0.079 -1.874 C10   KS3 25 
KS3 C11   C18 C 0 1 Y N N 35.340 25.040 32.733 -2.556 -0.077 -1.216 C11   KS3 26 
KS3 H1    H1  H 0 1 N N N 33.228 17.855 27.511 4.514  4.336  -0.383 H1    KS3 27 
KS3 H2    H2  H 0 1 N N N 31.282 19.117 27.558 3.941  2.442  -1.721 H2    KS3 28 
KS3 H3    H3  H 0 1 N N N 32.308 19.367 29.011 5.618  2.354  -1.131 H3    KS3 29 
KS3 H4    H4  H 0 1 N N N 31.462 21.473 27.996 4.802  1.029  0.842  H4    KS3 30 
KS3 H5    H5  H 0 1 N N N 33.254 20.695 25.776 4.082  -0.074 -1.913 H5    KS3 31 
KS3 H6    H6  H 0 1 N N N 31.168 19.779 25.667 6.333  -0.859 -1.753 H6    KS3 32 
KS3 H7    H7  H 0 1 N N N 32.643 23.473 28.205 2.966  -0.192 1.862  H7    KS3 33 
KS3 H8    H8  H 0 1 N N N 34.838 22.674 26.212 2.159  -1.353 -0.844 H8    KS3 34 
KS3 H9    H9  H 0 1 N N N 34.704 24.979 26.685 2.534  -3.384 0.356  H9    KS3 35 
KS3 H10   H10 H 0 1 N N N 31.904 23.303 25.796 4.796  -1.508 0.688  H10   KS3 36 
KS3 H11   H11 H 0 1 N N N 33.274 23.568 23.951 4.285  -3.401 -0.679 H11   KS3 37 
KS3 H12   H12 H 0 1 N N N 36.343 22.993 27.644 0.823  0.080  3.254  H12   KS3 38 
KS3 H13   H13 H 0 1 N N N 38.316 25.212 31.053 -3.631 0.173  2.000  H13   KS3 39 
KS3 H14   H14 H 0 1 N N N 39.986 26.231 32.447 -6.105 0.275  2.055  H14   KS3 40 
KS3 H15   H15 H 0 1 N N N 40.662 27.133 34.639 -8.226 0.281  0.857  H15   KS3 41 
KS3 H16   H16 H 0 1 N N N 39.048 27.338 36.464 -8.289 0.119  -1.594 H16   KS3 42 
KS3 H17   H17 H 0 1 N N N 36.686 26.653 36.181 -6.232 -0.049 -2.887 H17   KS3 43 
KS3 H18   H18 H 0 1 N N N 34.947 25.692 34.744 -3.764 -0.150 -2.951 H18   KS3 44 
KS3 H19   H19 H 0 1 N N N 34.338 24.667 32.580 -1.635 -0.147 -1.776 H19   KS3 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KS3 "O3'" "C3'" SING N N 1  
KS3 "O4'" "C4'" SING N N 2  
KS3 "C3'" "C4'" SING N N 3  
KS3 "C3'" "C2'" SING N N 4  
KS3 "C4'" "C5'" SING N N 5  
KS3 "O2'" "C2'" SING N N 6  
KS3 "C2'" "C1'" SING N N 7  
KS3 "O6'" "C6'" SING N N 8  
KS3 "C5'" "C6'" SING N N 9  
KS3 "C5'" "O5'" SING N N 10 
KS3 "C1'" "O5'" SING N N 11 
KS3 "C1'" C1    SING N N 12 
KS3 N2    C1    SING Y N 13 
KS3 N2    N3    SING Y N 14 
KS3 C1    N5    DOUB Y N 15 
KS3 N3    C4    DOUB Y N 16 
KS3 N5    C4    SING Y N 17 
KS3 C4    C6    SING N N 18 
KS3 C6    C7    DOUB Y N 19 
KS3 C6    C11   SING Y N 20 
KS3 C7    C8    SING Y N 21 
KS3 C11   C10   DOUB Y N 22 
KS3 C8    C12   DOUB Y N 23 
KS3 C8    C9    SING Y N 24 
KS3 C12   C13   SING Y N 25 
KS3 C10   C9    SING Y N 26 
KS3 C9    C15   DOUB Y N 27 
KS3 C13   C14   DOUB Y N 28 
KS3 C15   C14   SING Y N 29 
KS3 "O6'" H1    SING N N 30 
KS3 "C6'" H2    SING N N 31 
KS3 "C6'" H3    SING N N 32 
KS3 "C5'" H4    SING N N 33 
KS3 "C4'" H5    SING N N 34 
KS3 "O4'" H6    SING N N 35 
KS3 "C1'" H7    SING N N 36 
KS3 "C2'" H8    SING N N 37 
KS3 "O2'" H9    SING N N 38 
KS3 "C3'" H10   SING N N 39 
KS3 "O3'" H11   SING N N 40 
KS3 N2    H12   SING N N 41 
KS3 C7    H13   SING N N 42 
KS3 C12   H14   SING N N 43 
KS3 C13   H15   SING N N 44 
KS3 C14   H16   SING N N 45 
KS3 C15   H17   SING N N 46 
KS3 C10   H18   SING N N 47 
KS3 C11   H19   SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KS3 InChI            InChI                1.03  "InChI=1S/C18H19N3O5/c22-8-12-13(23)14(24)15(25)16(26-12)18-19-17(20-21-18)11-6-5-9-3-1-2-4-10(9)7-11/h1-7,12-16,22-25H,8H2,(H,19,20,21)/t12-,13-,14+,15-,16-/m1/s1" 
KS3 InChIKey         InChI                1.03  FJYFMJBUCUOYNH-IBEHDNSVSA-N                                                                                                                                          
KS3 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2[nH]nc(n2)c3ccc4ccccc4c3"                                                                                                
KS3 SMILES           CACTVS               3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2[nH]nc(n2)c3ccc4ccccc4c3"                                                                                                       
KS3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1ccc2cc(ccc2c1)c3nc([nH]n3)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O"                                                                                            
KS3 SMILES           "OpenEye OEToolkits" 2.0.5 "c1ccc2cc(ccc2c1)c3nc([nH]n3)C4C(C(C(C(O4)CO)O)O)O"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KS3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "(2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(3-naphthalen-2-yl-1~{H}-1,2,4-triazol-5-yl)oxane-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KS3 "Create component" 2016-08-19 EBI  
KS3 "Initial release"  2017-05-31 RCSB 
# 
