data_T53
# 
_chem_comp.id                                    T53 
_chem_comp.name                                  "N-[2-({3-[({4-[(4-methylpiperazin-1-yl)methyl]benzoyl}amino)methyl]benzyl}oxy)phenyl]-3-nitrobenzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H35 N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        593.672 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T53 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DVC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T53 OAD O1  O 0  1 N N N N N N 17.825 18.697 28.086 9.881   -4.412 0.193  OAD T53 1  
T53 NBR N1  N 1  1 N N N N N N 18.543 18.772 26.930 9.546   -3.336 0.654  NBR T53 2  
T53 OAE O2  O -1 1 N N N N N N 18.167 17.998 25.868 10.076  -2.915 1.667  OAE T53 3  
T53 CBM C1  C 0  1 Y N N N N N 19.616 19.619 26.806 8.498   -2.536 -0.020 CBM T53 4  
T53 CAU C2  C 0  1 Y N N N N N 20.200 19.758 25.582 8.124   -1.314 0.501  CAU T53 5  
T53 CAM C3  C 0  1 Y N N N N N 20.091 20.314 27.873 7.901   -3.012 -1.173 CAM T53 6  
T53 CAI C4  C 0  1 Y N N N N N 21.155 21.163 27.723 6.921   -2.271 -1.809 CAI T53 7  
T53 CAL C5  C 0  1 Y N N N N N 21.760 21.305 26.509 6.534   -1.050 -1.297 CAL T53 8  
T53 CBL C6  C 0  1 Y N N N N N 21.264 20.608 25.410 7.136   -0.561 -0.136 CBL T53 9  
T53 CBG C7  C 0  1 N N N N N N 21.797 20.686 24.022 6.729   0.748  0.417  CBG T53 10 
T53 OAC O3  O 0  1 N N N N N N 22.209 19.705 23.539 7.255   1.171  1.428  OAC T53 11 
T53 NBD N2  N 0  1 N N N N N N 21.766 21.800 23.348 5.775   1.473  -0.201 NBD T53 12 
T53 CBN C8  C 0  1 Y N N N N N 21.991 21.945 22.043 5.323   2.668  0.372  CBN T53 13 
T53 CAP C9  C 0  1 Y N N N N N 21.287 21.265 21.092 6.203   3.480  1.073  CAP T53 14 
T53 CAF C10 C 0  1 Y N N N N N 21.566 21.479 19.763 5.755   4.659  1.637  CAF T53 15 
T53 CAG C11 C 0  1 Y N N N N N 22.515 22.375 19.371 4.431   5.033  1.506  CAG T53 16 
T53 CAS C12 C 0  1 Y N N N N N 23.206 23.059 20.321 3.547   4.229  0.809  CAS T53 17 
T53 CBO C13 C 0  1 Y N N N N N 22.928 22.844 21.642 3.990   3.048  0.235  CBO T53 18 
T53 OBE O4  O 0  1 N N N N N N 23.587 23.508 22.593 3.122   2.257  -0.450 OBE T53 19 
T53 CBA C14 C 0  1 N N N N N N 24.271 24.706 22.387 1.768   2.704  -0.540 CBA T53 20 
T53 CBJ C15 C 0  1 Y N N N N N 24.842 25.047 23.714 0.961   1.707  -1.330 CBJ T53 21 
T53 CAT C16 C 0  1 Y N N N N N 24.576 26.246 24.313 0.330   0.661  -0.683 CAT T53 22 
T53 CAK C17 C 0  1 Y N N N N N 25.626 24.130 24.347 0.848   1.840  -2.702 CAK T53 23 
T53 CAH C18 C 0  1 Y N N N N N 26.160 24.412 25.575 0.107   0.925  -3.427 CAH T53 24 
T53 CAJ C19 C 0  1 Y N N N N N 25.900 25.614 26.175 -0.519  -0.124 -2.780 CAJ T53 25 
T53 CBH C20 C 0  1 Y N N N N N 25.106 26.534 25.544 -0.411  -0.254 -1.408 CBH T53 26 
T53 CAV C21 C 0  1 N N N N N N 24.838 27.834 26.231 -1.099  -1.395 -0.703 CAV T53 27 
T53 NBC N3  N 0  1 N N N N N N 23.998 28.658 25.436 -2.449  -0.983 -0.310 NBC T53 28 
T53 CBF C22 C 0  1 N N N N N N 23.743 29.886 25.771 -3.254  -1.846 0.339  CBF T53 29 
T53 OAB O5  O 0  1 N N N N N N 24.256 30.430 26.700 -2.861  -2.966 0.599  OAB T53 30 
T53 CBK C23 C 0  1 Y N N N N N 22.780 30.647 24.959 -4.617  -1.430 0.736  CBK T53 31 
T53 CAR C24 C 0  1 Y N N N N N 22.624 32.006 25.121 -5.454  -2.322 1.408  CAR T53 32 
T53 CAO C25 C 0  1 Y N N N N N 21.711 32.671 24.338 -6.724  -1.927 1.776  CAO T53 33 
T53 CAQ C26 C 0  1 Y N N N N N 22.046 29.949 24.044 -5.069  -0.142 0.444  CAQ T53 34 
T53 CAN C27 C 0  1 Y N N N N N 21.149 30.608 23.267 -6.339  0.241  0.822  CAN T53 35 
T53 CBI C28 C 0  1 Y N N N N N 20.983 31.958 23.412 -7.168  -0.651 1.479  CBI T53 36 
T53 CBB C29 C 0  1 N N N N N N 19.971 32.582 22.510 -8.554  -0.225 1.888  CBB T53 37 
T53 NBQ N4  N 0  1 N N N N N N 19.719 33.938 22.923 -9.499  -0.524 0.804  NBQ T53 38 
T53 CAY C30 C 0  1 N N N N N N 20.733 34.764 22.265 -10.888 -0.345 1.250  CAY T53 39 
T53 CAW C31 C 0  1 N N N N N N 20.544 34.760 20.761 -11.840 -0.742 0.120  CAW T53 40 
T53 NBP N5  N 0  1 N N N N N N 19.206 35.296 20.509 -11.560 0.082  -1.064 NBP T53 41 
T53 CAA C32 C 0  1 N N N N N N 19.048 35.505 19.067 -11.850 1.498  -0.801 CAA T53 42 
T53 CAX C33 C 0  1 N N N N N N 18.219 34.333 21.007 -10.171 -0.097 -1.511 CAX T53 43 
T53 CAZ C34 C 0  1 N N N N N N 18.357 34.287 22.520 -9.219  0.300  -0.380 CAZ T53 44 
T53 H1  H1  H 0  1 N N N N N N 19.823 19.195 24.741 8.593   -0.942 1.399  H1  T53 45 
T53 H2  H2  H 0  1 N N N N N N 19.628 20.196 28.842 8.201   -3.967 -1.579 H2  T53 46 
T53 H3  H3  H 0  1 N N N N N N 21.517 21.724 28.572 6.458   -2.648 -2.709 H3  T53 47 
T53 H4  H4  H 0  1 N N N N N N 22.617 21.953 26.401 5.769   -0.472 -1.794 H4  T53 48 
T53 H5  H5  H 0  1 N N N N N N 21.552 22.631 23.862 5.402   1.167  -1.042 H5  T53 49 
T53 H6  H6  H 0  1 N N N N N N 20.517 20.565 21.381 7.238   3.190  1.178  H6  T53 50 
T53 H7  H7  H 0  1 N N N N N N 21.021 20.925 19.013 6.441   5.291  2.183  H7  T53 51 
T53 H8  H8  H 0  1 N N N N N N 22.715 22.539 18.322 4.085   5.955  1.949  H8  T53 52 
T53 H9  H9  H 0  1 N N N N N N 23.969 23.767 20.034 2.513   4.524  0.708  H9  T53 53 
T53 H10 H10 H 0  1 N N N N N N 25.070 24.573 21.643 1.349   2.798  0.462  H10 T53 54 
T53 H11 H11 H 0  1 N N N N N N 23.581 25.493 22.048 1.738   3.673  -1.039 H11 T53 55 
T53 H12 H12 H 0  1 N N N N N N 23.946 26.969 23.815 0.415   0.559  0.388  H12 T53 56 
T53 H13 H13 H 0  1 N N N N N N 25.827 23.178 23.878 1.337   2.660  -3.207 H13 T53 57 
T53 H14 H14 H 0  1 N N N N N N 26.787 23.686 26.071 0.018   1.030  -4.498 H14 T53 58 
T53 H15 H15 H 0  1 N N N N N N 26.320 25.837 27.145 -1.098  -0.839 -3.346 H15 T53 59 
T53 H16 H16 H 0  1 N N N N N N 25.792 28.353 26.406 -1.161  -2.252 -1.373 H16 T53 60 
T53 H17 H17 H 0  1 N N N N N N 24.345 27.638 27.194 -0.530  -1.669 0.185  H17 T53 61 
T53 H18 H18 H 0  1 N N N N N N 23.595 28.285 24.601 -2.762  -0.089 -0.518 H18 T53 62 
T53 H19 H19 H 0  1 N N N N N N 23.211 32.541 25.853 -5.108  -3.318 1.640  H19 T53 63 
T53 H20 H20 H 0  1 N N N N N N 21.567 33.736 24.447 -7.372  -2.616 2.296  H20 T53 64 
T53 H21 H21 H 0  1 N N N N N N 22.178 28.882 23.939 -4.426  0.553  -0.076 H21 T53 65 
T53 H22 H22 H 0  1 N N N N N N 20.567 30.067 22.535 -6.692  1.236  0.593  H22 T53 66 
T53 H23 H23 H 0  1 N N N N N N 19.035 32.006 22.558 -8.850  -0.766 2.787  H23 T53 67 
T53 H24 H24 H 0  1 N N N N N N 20.351 32.579 21.478 -8.561  0.846  2.091  H24 T53 68 
T53 H26 H26 H 0  1 N N N N N N 21.731 34.367 22.503 -11.074 -0.975 2.121  H26 T53 69 
T53 H27 H27 H 0  1 N N N N N N 20.651 35.797 22.635 -11.052 0.699  1.515  H27 T53 70 
T53 H28 H28 H 0  1 N N N N N N 20.622 33.734 20.371 -11.694 -1.794 -0.126 H28 T53 71 
T53 H29 H29 H 0  1 N N N N N N 21.304 35.394 20.281 -12.870 -0.583 0.439  H29 T53 72 
T53 H31 H31 H 0  1 N N N N N N 18.045 35.908 18.862 -11.229 1.849  0.023  H31 T53 73 
T53 H32 H32 H 0  1 N N N N N N 19.809 36.217 18.714 -11.634 2.085  -1.694 H32 T53 74 
T53 H33 H33 H 0  1 N N N N N N 19.172 34.546 18.542 -12.901 1.611  -0.537 H33 T53 75 
T53 H34 H34 H 0  1 N N N N N N 17.205 34.657 20.731 -10.006 -1.142 -1.776 H34 T53 76 
T53 H35 H35 H 0  1 N N N N N N 18.415 33.338 20.581 -9.985  0.533  -2.381 H35 T53 77 
T53 H36 H36 H 0  1 N N N N N N 18.104 35.275 22.932 -9.365  1.352  -0.134 H36 T53 78 
T53 H37 H37 H 0  1 N N N N N N 17.662 33.534 22.920 -8.189  0.140  -0.700 H37 T53 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T53 CAA NBP SING N N 1  
T53 CAG CAF DOUB Y N 2  
T53 CAG CAS SING Y N 3  
T53 CAF CAP SING Y N 4  
T53 CAS CBO DOUB Y N 5  
T53 NBP CAW SING N N 6  
T53 NBP CAX SING N N 7  
T53 CAW CAY SING N N 8  
T53 CAX CAZ SING N N 9  
T53 CAP CBN DOUB Y N 10 
T53 CBO CBN SING Y N 11 
T53 CBO OBE SING N N 12 
T53 CBN NBD SING N N 13 
T53 CAY NBQ SING N N 14 
T53 CBA OBE SING N N 15 
T53 CBA CBJ SING N N 16 
T53 CBB NBQ SING N N 17 
T53 CBB CBI SING N N 18 
T53 CAZ NBQ SING N N 19 
T53 CAN CBI DOUB Y N 20 
T53 CAN CAQ SING Y N 21 
T53 NBD CBG SING N N 22 
T53 CBI CAO SING Y N 23 
T53 OAC CBG DOUB N N 24 
T53 CBJ CAT DOUB Y N 25 
T53 CBJ CAK SING Y N 26 
T53 CBG CBL SING N N 27 
T53 CAQ CBK DOUB Y N 28 
T53 CAT CBH SING Y N 29 
T53 CAO CAR DOUB Y N 30 
T53 CAK CAH DOUB Y N 31 
T53 CBK CAR SING Y N 32 
T53 CBK CBF SING N N 33 
T53 CBL CAU DOUB Y N 34 
T53 CBL CAL SING Y N 35 
T53 NBC CBF SING N N 36 
T53 NBC CAV SING N N 37 
T53 CBH CAJ DOUB Y N 38 
T53 CBH CAV SING N N 39 
T53 CAH CAJ SING Y N 40 
T53 CAU CBM SING Y N 41 
T53 CBF OAB DOUB N N 42 
T53 OAE NBR SING N N 43 
T53 CAL CAI DOUB Y N 44 
T53 CBM NBR SING N N 45 
T53 CBM CAM DOUB Y N 46 
T53 NBR OAD DOUB N N 47 
T53 CAI CAM SING Y N 48 
T53 CAU H1  SING N N 49 
T53 CAM H2  SING N N 50 
T53 CAI H3  SING N N 51 
T53 CAL H4  SING N N 52 
T53 NBD H5  SING N N 53 
T53 CAP H6  SING N N 54 
T53 CAF H7  SING N N 55 
T53 CAG H8  SING N N 56 
T53 CAS H9  SING N N 57 
T53 CBA H10 SING N N 58 
T53 CBA H11 SING N N 59 
T53 CAT H12 SING N N 60 
T53 CAK H13 SING N N 61 
T53 CAH H14 SING N N 62 
T53 CAJ H15 SING N N 63 
T53 CAV H16 SING N N 64 
T53 CAV H17 SING N N 65 
T53 NBC H18 SING N N 66 
T53 CAR H19 SING N N 67 
T53 CAO H20 SING N N 68 
T53 CAQ H21 SING N N 69 
T53 CAN H22 SING N N 70 
T53 CBB H23 SING N N 71 
T53 CBB H24 SING N N 72 
T53 CAY H26 SING N N 73 
T53 CAY H27 SING N N 74 
T53 CAW H28 SING N N 75 
T53 CAW H29 SING N N 76 
T53 CAA H31 SING N N 77 
T53 CAA H32 SING N N 78 
T53 CAA H33 SING N N 79 
T53 CAX H34 SING N N 80 
T53 CAX H35 SING N N 81 
T53 CAZ H36 SING N N 82 
T53 CAZ H37 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T53 SMILES           ACDLabs              12.01 "O=[N+]([O-])c1cccc(c1)C(=O)Nc2ccccc2OCc3cc(ccc3)CNC(=O)c4ccc(cc4)CN5CCN(CC5)C"                                                                                                                                    
T53 InChI            InChI                1.03  "InChI=1S/C34H35N5O5/c1-37-16-18-38(19-17-37)23-25-12-14-28(15-13-25)33(40)35-22-26-6-4-7-27(20-26)24-44-32-11-3-2-10-31(32)36-34(41)29-8-5-9-30(21-29)39(42)43/h2-15,20-21H,16-19,22-24H2,1H3,(H,35,40)(H,36,41)" 
T53 InChIKey         InChI                1.03  SBYMRRQFPFQPFC-UHFFFAOYSA-N                                                                                                                                                                                        
T53 SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(COc4ccccc4NC(=O)c5cccc(c5)[N+]([O-])=O)c3"                                                                                                                                    
T53 SMILES           CACTVS               3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(COc4ccccc4NC(=O)c5cccc(c5)[N+]([O-])=O)c3"                                                                                                                                    
T53 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(c3)COc4ccccc4NC(=O)c5cccc(c5)[N+](=O)[O-]"                                                                                                                                    
T53 SMILES           "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(c3)COc4ccccc4NC(=O)c5cccc(c5)[N+](=O)[O-]"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
T53 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-({3-[({4-[(4-methylpiperazin-1-yl)methyl]benzoyl}amino)methyl]benzyl}oxy)phenyl]-3-nitrobenzamide"             
T53 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[2-[[3-[[[4-[(4-methylpiperazin-1-yl)methyl]phenyl]carbonylamino]methyl]phenyl]methoxy]phenyl]-3-nitro-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T53 "Create component" 2015-09-30 PDBJ 
T53 "Initial release"  2016-09-21 RCSB 
T53 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            T53 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAL 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
