data_W53
# 
_chem_comp.id                                    W53 
_chem_comp.name                                  "3-(7-azanyl-1,8-naphthyridin-2-yl)-2-[(7-azanyl-1,8-naphthyridin-2-yl)methyl]-~{N}-(3-azanylpropyl)propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H26 N8 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-25 
_chem_comp.pdbx_modified_date                    2024-04-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        430.506 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W53 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QMH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W53 C8  C1  C 0 1 N N N N N N -26.227 5.110  -8.973  0.103  0.333  -1.914 C8  W53 1  
W53 N7  N1  N 0 1 N N N N N N -23.597 -1.505 -6.041  5.484  -1.477 3.018  N7  W53 2  
W53 C5  C2  C 0 1 Y N N N N N -26.712 6.010  -5.393  -2.719 -2.080 -2.503 C5  W53 3  
W53 C6  C3  C 0 1 Y N N N N N -26.644 6.149  -6.736  -1.807 -1.079 -2.694 C6  W53 4  
W53 N6  N2  N 0 1 Y N N N N N -23.630 0.654  -6.856  4.118  -0.189 1.635  N6  W53 5  
W53 N1  N3  N 0 1 Y N N N N N -26.874 2.387  -5.200  -1.729 -3.054 0.876  N1  W53 6  
W53 C2  C4  C 0 1 Y N N N N N -26.766 4.723  -4.815  -2.702 -2.768 -1.279 C2  W53 7  
W53 N3  N4  N 0 1 N N N N N N -25.279 7.786  -10.356 -1.986 2.363  0.306  N3  W53 8  
W53 C4  C5  C 0 1 Y N N N N N -26.945 3.193  -2.953  -3.539 -4.435 0.199  C4  W53 9  
W53 N   N5  N 0 1 N N N N N N -27.034 0.833  -3.504  -2.513 -4.672 2.360  N   W53 10 
W53 C   C6  C 0 1 Y N N N N N -26.953 2.112  -3.867  -2.576 -4.030 1.134  C   W53 11 
W53 C1  C7  C 0 1 Y N N N N N -26.770 3.661  -5.697  -1.752 -2.405 -0.294 C1  W53 12 
W53 C14 C8  C 0 1 N N N N N N -23.696 4.806  -9.056  1.089  2.414  -0.945 C14 W53 13 
W53 C15 C9  C 0 1 Y N N N N N -23.598 4.039  -7.762  2.439  1.767  -0.778 C15 W53 14 
W53 C16 C10 C 0 1 Y N N N N N -23.586 2.020  -6.717  3.875  0.498  0.513  C16 W53 15 
W53 C17 C11 C 0 1 Y N N N N N -23.520 2.578  -5.443  4.881  0.600  -0.478 C17 W53 16 
W53 C18 C12 C 0 1 Y N N N N N -23.538 1.703  -4.331  6.126  -0.026 -0.268 C18 W53 17 
W53 C19 C13 C 0 1 Y N N N N N -23.604 0.354  -4.498  6.314  -0.712 0.895  C19 W53 18 
W53 C20 C14 C 0 1 Y N N N N N -23.638 -0.196 -5.791  5.280  -0.777 1.840  C20 W53 19 
W53 C21 C15 C 0 1 Y N N N N N -23.482 3.988  -5.388  4.615  1.323  -1.653 C21 W53 20 
W53 C22 C16 C 0 1 Y N N N N N -23.517 4.712  -6.542  3.385  1.904  -1.789 C22 W53 21 
W53 C3  C17 C 0 1 Y N N N N N -26.849 4.461  -3.428  -3.611 -3.811 -1.011 C3  W53 22 
W53 C7  C18 C 0 1 Y N N N N N -26.607 5.009  -7.526  -0.895 -0.774 -1.688 C7  W53 23 
W53 C9  C19 C 0 1 N N N N N N -24.870 5.787  -9.132  -0.006 1.357  -0.783 C9  W53 24 
W53 N2  N6  N 0 1 Y N N N N N -26.688 3.785  -7.030  -0.888 -1.415 -0.544 N2  W53 25 
W53 N5  N7  N 0 1 Y N N N N N -23.640 2.720  -7.858  2.692  1.090  0.317  N5  W53 26 
W53 O   O1  O 0 1 N N N N N N -24.439 6.002  -11.465 -1.880 2.250  -1.907 O   W53 27 
W53 C10 C20 C 0 1 N N N N N N -24.873 6.516  -10.433 -1.358 2.022  -0.836 C10 W53 28 
W53 C11 C21 C 0 1 N N N N N N -24.759 8.707  -9.349  -3.345 2.908  0.260  C11 W53 29 
W53 C12 C22 C 0 1 N N N N N N -25.866 9.464  -8.617  -3.781 3.311  1.671  C12 W53 30 
W53 C13 C23 C 0 1 N N N N N N -25.829 9.393  -7.098  -5.238 3.778  1.640  C13 W53 31 
W53 N4  N8  N 0 1 N N N N N N -24.474 9.383  -6.569  -5.623 4.268  2.970  N4  W53 32 
W53 H8  H1  H 0 1 N N N N N N -26.178 4.099  -9.404  1.110  -0.084 -1.931 H8  W53 33 
W53 H7  H2  H 0 1 N N N N N N -26.988 5.699  -9.505  -0.105 0.820  -2.867 H7  W53 34 
W53 H24 H3  H 0 1 N N N N N N -23.565 -1.655 -7.029  4.806  -1.466 3.712  H24 W53 35 
W53 H25 H4  H 0 1 N N N N N N -22.782 -1.900 -5.618  6.304  -1.977 3.149  H25 W53 36 
W53 H5  H5  H 0 1 N N N N N N -26.725 6.885  -4.761  -3.435 -2.332 -3.272 H5  W53 37 
W53 H6  H6  H 0 1 N N N N N N -26.619 7.130  -7.186  -1.794 -0.527 -3.622 H6  W53 38 
W53 H10 H7  H 0 1 N N N N N N -25.961 8.117  -11.009 -1.538 2.248  1.159  H10 W53 39 
W53 H4  H8  H 0 1 N N N N N N -27.014 3.011  -1.891  -4.221 -5.238 0.436  H4  W53 40 
W53 H1  H9  H 0 1 N N N N N N -27.023 0.253  -4.319  -1.851 -4.402 3.016  H1  W53 41 
W53 H   H10 H 0 1 N N N N N N -26.256 0.602  -2.920  -3.130 -5.392 2.563  H   W53 42 
W53 H19 H11 H 0 1 N N N N N N -23.802 4.081  -9.877  0.961  3.188  -0.188 H19 W53 43 
W53 H20 H12 H 0 1 N N N N N N -22.764 5.376  -9.188  1.019  2.860  -1.937 H20 W53 44 
W53 H21 H13 H 0 1 N N N N N N -23.499 2.113  -3.333  6.909  0.035  -1.008 H21 W53 45 
W53 H22 H14 H 0 1 N N N N N N -23.630 -0.295 -3.635  7.256  -1.203 1.088  H22 W53 46 
W53 H26 H15 H 0 1 N N N N N N -23.425 4.491  -4.434  5.363  1.418  -2.427 H26 W53 47 
W53 H27 H16 H 0 1 N N N N N N -23.483 5.791  -6.513  3.147  2.467  -2.680 H27 W53 48 
W53 H3  H17 H 0 1 N N N N N N -26.836 5.287  -2.732  -4.346 -4.108 -1.744 H3  W53 49 
W53 H9  H18 H 0 1 N N N N N N -24.755 6.520  -8.320  0.113  0.853  0.176  H9  W53 50 
W53 H12 H19 H 0 1 N N N N N N -24.179 8.132  -8.612  -3.364 3.783  -0.390 H12 W53 51 
W53 H11 H20 H 0 1 N N N N N N -24.102 9.437  -9.845  -4.027 2.152  -0.128 H11 W53 52 
W53 H14 H21 H 0 1 N N N N N N -25.798 10.523 -8.906  -3.688 2.455  2.338  H14 W53 53 
W53 H13 H22 H 0 1 N N N N N N -26.831 9.054  -8.950  -3.147 4.122  2.029  H13 W53 54 
W53 H15 H23 H 0 1 N N N N N N -26.359 10.267 -6.692  -5.347 4.580  0.911  H15 W53 55 
W53 H16 H24 H 0 1 N N N N N N -26.339 8.473  -6.776  -5.881 2.943  1.361  H16 W53 56 
W53 H17 H25 H 0 1 N N N N N N -24.506 9.336  -5.571  -6.596 4.533  2.990  H17 W53 57 
W53 H18 H26 H 0 1 N N N N N N -23.983 8.588  -6.925  -5.420 3.582  3.682  H18 W53 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W53 N   C   SING N N 1  
W53 C   N1  DOUB Y N 2  
W53 N1  C1  SING Y N 3  
W53 C1  C2  DOUB Y N 4  
W53 C3  C2  SING Y N 5  
W53 C4  C3  DOUB Y N 6  
W53 C   C4  SING Y N 7  
W53 C2  C5  SING Y N 8  
W53 C5  C6  DOUB Y N 9  
W53 C6  C7  SING Y N 10 
W53 N2  C7  DOUB Y N 11 
W53 C1  N2  SING Y N 12 
W53 C7  C8  SING N N 13 
W53 C8  C9  SING N N 14 
W53 C9  C10 SING N N 15 
W53 C10 O   DOUB N N 16 
W53 N3  C10 SING N N 17 
W53 C11 N3  SING N N 18 
W53 C12 C11 SING N N 19 
W53 C13 C12 SING N N 20 
W53 N4  C13 SING N N 21 
W53 C14 C9  SING N N 22 
W53 C15 C14 SING N N 23 
W53 C15 N5  DOUB Y N 24 
W53 N5  C16 SING Y N 25 
W53 C16 C17 DOUB Y N 26 
W53 C18 C17 SING Y N 27 
W53 C19 C18 DOUB Y N 28 
W53 C20 C19 SING Y N 29 
W53 N6  C20 DOUB Y N 30 
W53 C16 N6  SING Y N 31 
W53 N7  C20 SING N N 32 
W53 C17 C21 SING Y N 33 
W53 C21 C22 DOUB Y N 34 
W53 C22 C15 SING Y N 35 
W53 C8  H8  SING N N 36 
W53 C8  H7  SING N N 37 
W53 N7  H24 SING N N 38 
W53 N7  H25 SING N N 39 
W53 C5  H5  SING N N 40 
W53 C6  H6  SING N N 41 
W53 N3  H10 SING N N 42 
W53 C4  H4  SING N N 43 
W53 N   H1  SING N N 44 
W53 N   H   SING N N 45 
W53 C14 H19 SING N N 46 
W53 C14 H20 SING N N 47 
W53 C18 H21 SING N N 48 
W53 C19 H22 SING N N 49 
W53 C21 H26 SING N N 50 
W53 C22 H27 SING N N 51 
W53 C3  H3  SING N N 52 
W53 C9  H9  SING N N 53 
W53 C11 H12 SING N N 54 
W53 C11 H11 SING N N 55 
W53 C12 H14 SING N N 56 
W53 C12 H13 SING N N 57 
W53 C13 H15 SING N N 58 
W53 C13 H16 SING N N 59 
W53 N4  H17 SING N N 60 
W53 N4  H18 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W53 InChI            InChI                1.06  "InChI=1S/C23H26N8O/c24-10-1-11-27-23(32)16(12-17-6-2-14-4-8-19(25)30-21(14)28-17)13-18-7-3-15-5-9-20(26)31-22(15)29-18/h2-9,16H,1,10-13,24H2,(H,27,32)(H2,25,28,30)(H2,26,29,31)" 
W53 InChIKey         InChI                1.06  CXQMELVFJVOVGR-UHFFFAOYSA-N                                                                                                                                                        
W53 SMILES_CANONICAL CACTVS               3.385 "NCCCNC(=O)C(Cc1ccc2ccc(N)nc2n1)Cc3ccc4ccc(N)nc4n3"                                                                                                                                
W53 SMILES           CACTVS               3.385 "NCCCNC(=O)C(Cc1ccc2ccc(N)nc2n1)Cc3ccc4ccc(N)nc4n3"                                                                                                                                
W53 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(nc2c1ccc(n2)N)CC(Cc3ccc4ccc(nc4n3)N)C(=O)NCCCN"                                                                                                                              
W53 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(nc2c1ccc(n2)N)CC(Cc3ccc4ccc(nc4n3)N)C(=O)NCCCN"                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           W53 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-(7-azanyl-1,8-naphthyridin-2-yl)-2-[(7-azanyl-1,8-naphthyridin-2-yl)methyl]-~{N}-(3-azanylpropyl)propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W53 "Create component" 2023-09-25 PDBE 
W53 "Initial release"  2024-05-01 RCSB 
# 
