data_YS3
# 
_chem_comp.id                                    YS3 
_chem_comp.name                                  "(1R,3R,7E,17beta)-17-[(2R)-5-hydroxy-5-methylhexan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H42 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-23 
_chem_comp.pdbx_modified_date                    2012-05-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        402.610 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YS3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VRU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YS3 OAH OAH O 0 1 N N N -11.963 19.471 -7.414 7.699  -0.578 -0.449 OAH YS3 1  
YS3 CBA CBA C 0 1 N N N -11.422 20.521 -6.639 6.906  -1.519 0.278  CBA YS3 2  
YS3 CAC CAC C 0 1 N N N -10.028 20.842 -7.102 6.448  -2.635 -0.663 CAC YS3 3  
YS3 CAD CAD C 0 1 N N N -11.356 20.000 -5.177 7.740  -2.118 1.413  CAD YS3 4  
YS3 CAP CAP C 0 1 N N N -12.306 21.791 -6.887 5.683  -0.811 0.863  CAP YS3 5  
YS3 CAM CAM C 0 1 N N N -13.572 21.966 -6.060 4.785  -0.320 -0.275 CAM YS3 6  
YS3 CAW CAW C 0 1 N N R -14.557 22.823 -6.834 3.562  0.388  0.311  CAW YS3 7  
YS3 CAB CAB C 0 1 N N N -15.214 22.050 -7.995 4.008  1.652  1.048  CAB YS3 8  
YS3 CAZ CAZ C 0 1 N N R -15.693 23.479 -6.004 2.604  0.769  -0.820 CAZ YS3 9  
YS3 CAN CAN C 0 1 N N N -16.261 22.626 -4.831 2.053  -0.505 -1.512 CAN YS3 10 
YS3 CAQ CAQ C 0 1 N N N -17.026 23.657 -3.966 0.503  -0.425 -1.405 CAQ YS3 11 
YS3 CBB CBB C 0 1 N N S -16.780 24.984 -4.693 0.253  1.077  -1.255 CBB YS3 12 
YS3 CBC CBC C 0 1 N N R -15.396 24.852 -5.346 1.379  1.475  -0.259 CBC YS3 13 
YS3 CAE CAE C 0 1 N N N -14.196 24.809 -4.384 1.054  0.903  1.122  CAE YS3 14 
YS3 CAO CAO C 0 1 N N N -15.258 26.027 -6.376 1.398  2.983  -0.170 CAO YS3 15 
YS3 CAK CAK C 0 1 N N N -15.542 27.434 -5.761 0.100  3.424  0.526  CAK YS3 16 
YS3 CAL CAL C 0 1 N N N -16.843 27.479 -4.899 -1.138 2.959  -0.238 CAL YS3 17 
YS3 CAV CAV C 0 1 N N N -16.892 26.297 -3.912 -1.030 1.483  -0.593 CAV YS3 18 
YS3 CAJ CAJ C 0 1 N N N -16.961 26.427 -2.500 -2.003 0.616  -0.335 CAJ YS3 19 
YS3 CAI CAI C 0 1 N N N -16.557 27.619 -1.882 -3.241 1.072  0.318  CAI YS3 20 
YS3 CAU CAU C 0 1 N N N -16.596 27.812 -0.505 -4.168 0.189  0.674  CAU YS3 21 
YS3 CAS CAS C 0 1 N N N -16.364 29.223 0.051  -5.499 0.650  1.223  CAS YS3 22 
YS3 CAR CAR C 0 1 N N N -16.153 26.687 0.440  -3.912 -1.294 0.534  CAR YS3 23 
YS3 CAX CAX C 0 1 N N R -16.916 26.795 1.776  -5.035 -1.906 -0.314 CAX YS3 24 
YS3 OAF OAF O 0 1 N N N -16.556 25.798 2.685  -4.958 -3.332 -0.254 OAF YS3 25 
YS3 CAT CAT C 0 1 N N N -16.555 28.141 2.355  -6.363 -1.445 0.240  CAT YS3 26 
YS3 CAA CAA C 0 1 N N N -16.020 28.294 3.607  -7.277 -2.315 0.592  CAA YS3 27 
YS3 CAY CAY C 0 1 N N R -16.946 29.337 1.501  -6.618 0.034  0.374  CAY YS3 28 
YS3 OAG OAG O 0 1 N N N -18.377 29.263 1.485  -6.626 0.639  -0.921 OAG YS3 29 
YS3 H1  H1  H 0 1 N N N -12.843 19.276 -7.114 8.493  -0.959 -0.849 H1  YS3 30 
YS3 H2  H2  H 0 1 N N N -9.618  21.660 -6.492 7.320  -3.140 -1.080 H2  YS3 31 
YS3 H3  H3  H 0 1 N N N -9.392  19.951 -6.996 5.844  -3.353 -0.108 H3  YS3 32 
YS3 H4  H4  H 0 1 N N N -10.054 21.150 -8.158 5.854  -2.208 -1.471 H4  YS3 33 
YS3 H5  H5  H 0 1 N N N -10.939 20.783 -4.527 8.066  -1.323 2.083  H5  YS3 34 
YS3 H6  H6  H 0 1 N N N -12.368 19.739 -4.835 7.135  -2.836 1.967  H6  YS3 35 
YS3 H7  H7  H 0 1 N N N -10.714 19.108 -5.134 8.611  -2.623 0.996  H7  YS3 36 
YS3 H8  H8  H 0 1 N N N -11.672 22.670 -6.700 5.126  -1.507 1.491  H8  YS3 37 
YS3 H9  H9  H 0 1 N N N -12.608 21.775 -7.945 6.007  0.039  1.463  H9  YS3 38 
YS3 H10 H10 H 0 1 N N N -14.019 20.981 -5.859 5.342  0.376  -0.902 H10 YS3 39 
YS3 H11 H11 H 0 1 N N N -13.325 22.458 -5.108 4.461  -1.170 -0.874 H11 YS3 40 
YS3 H12 H12 H 0 1 N N N -13.983 23.645 -7.286 3.054  -0.279 1.007  H12 YS3 41 
YS3 H13 H13 H 0 1 N N N -15.917 22.710 -8.524 4.516  2.319  0.352  H13 YS3 42 
YS3 H14 H14 H 0 1 N N N -14.436 21.707 -8.694 3.136  2.157  1.465  H14 YS3 43 
YS3 H15 H15 H 0 1 N N N -15.757 21.181 -7.596 4.691  1.381  1.854  H15 YS3 44 
YS3 H16 H16 H 0 1 N N N -16.529 23.643 -6.699 3.109  1.407  -1.545 H16 YS3 45 
YS3 H17 H17 H 0 1 N N N -16.941 21.847 -5.206 2.355  -0.524 -2.559 H17 YS3 46 
YS3 H18 H18 H 0 1 N N N -15.448 22.158 -4.257 2.417  -1.396 -1.000 H18 YS3 47 
YS3 H19 H19 H 0 1 N N N -18.100 23.421 -3.930 0.034  -0.806 -2.312 H19 YS3 48 
YS3 H20 H20 H 0 1 N N N -16.623 23.688 -2.943 0.148  -0.968 -0.529 H20 YS3 49 
YS3 H21 H21 H 0 1 N N N -17.513 25.038 -5.512 0.370  1.586  -2.212 H21 YS3 50 
YS3 H22 H22 H 0 1 N N N -14.322 23.976 -3.676 1.839  1.184  1.825  H22 YS3 51 
YS3 H23 H23 H 0 1 N N N -13.270 24.663 -4.959 0.100  1.302  1.465  H23 YS3 52 
YS3 H24 H24 H 0 1 N N N -14.137 25.757 -3.829 0.994  -0.183 1.060  H24 YS3 53 
YS3 H25 H25 H 0 1 N N N -15.971 25.856 -7.196 2.260  3.308  0.413  H25 YS3 54 
YS3 H26 H26 H 0 1 N N N -14.233 26.022 -6.774 1.445  3.412  -1.171 H26 YS3 55 
YS3 H27 H27 H 0 1 N N N -14.691 27.715 -5.124 0.076  3.003  1.531  H27 YS3 56 
YS3 H28 H28 H 0 1 N N N -15.641 28.160 -6.581 0.086  4.511  0.598  H28 YS3 57 
YS3 H29 H29 H 0 1 N N N -16.867 28.422 -4.333 -2.022 3.116  0.381  H29 YS3 58 
YS3 H30 H30 H 0 1 N N N -17.717 27.429 -5.564 -1.235 3.543  -1.153 H30 YS3 59 
YS3 H32 H32 H 0 1 N N N -17.325 25.606 -1.901 -1.886 -0.423 -0.604 H32 YS3 60 
YS3 H33 H33 H 0 1 N N N -16.199 28.425 -2.505 -3.396 2.124  0.506  H33 YS3 61 
YS3 H35 H35 H 0 1 N N N -15.284 29.430 0.076  -5.602 0.323  2.257  H35 YS3 62 
YS3 H36 H36 H 0 1 N N N -16.863 29.956 -0.599 -5.558 1.737  1.173  H36 YS3 63 
YS3 H37 H37 H 0 1 N N N -16.368 25.714 -0.025 -2.953 -1.455 0.041  H37 YS3 64 
YS3 H38 H38 H 0 1 N N N -15.073 26.773 0.629  -3.903 -1.759 1.519  H38 YS3 65 
YS3 H39 H39 H 0 1 N N N -17.996 26.767 1.571  -4.935 -1.575 -1.348 H39 YS3 66 
YS3 H40 H40 H 0 1 N N N -17.051 25.907 3.488  -5.641 -3.784 -0.769 H40 YS3 67 
YS3 H41 H41 H 0 1 N N N -15.839 27.428 4.226  -7.084 -3.373 0.487  H41 YS3 68 
YS3 H42 H42 H 0 1 N N N -15.779 29.281 3.974  -8.223 -1.975 0.987  H42 YS3 69 
YS3 H43 H43 H 0 1 N N N -16.595 30.269 1.968  -7.579 0.195  0.862  H43 YS3 70 
YS3 H44 H44 H 0 1 N N N -18.708 29.334 2.373  -7.311 0.296  -1.511 H44 YS3 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YS3 CAB CAW SING N N 1  
YS3 OAH CBA SING N N 2  
YS3 CAC CBA SING N N 3  
YS3 CAP CBA SING N N 4  
YS3 CAP CAM SING N N 5  
YS3 CAW CAM SING N N 6  
YS3 CAW CAZ SING N N 7  
YS3 CBA CAD SING N N 8  
YS3 CAO CAK SING N N 9  
YS3 CAO CBC SING N N 10 
YS3 CAZ CBC SING N N 11 
YS3 CAZ CAN SING N N 12 
YS3 CAK CAL SING N N 13 
YS3 CBC CBB SING N N 14 
YS3 CBC CAE SING N N 15 
YS3 CAL CAV SING N N 16 
YS3 CAN CAQ SING N N 17 
YS3 CBB CAQ SING N N 18 
YS3 CBB CAV SING N N 19 
YS3 CAV CAJ DOUB N E 20 
YS3 CAJ CAI SING N N 21 
YS3 CAI CAU DOUB N N 22 
YS3 CAU CAS SING N N 23 
YS3 CAU CAR SING N N 24 
YS3 CAS CAY SING N N 25 
YS3 CAR CAX SING N N 26 
YS3 OAG CAY SING N N 27 
YS3 CAY CAT SING N N 28 
YS3 CAX CAT SING N N 29 
YS3 CAX OAF SING N N 30 
YS3 CAT CAA DOUB N N 31 
YS3 OAH H1  SING N N 32 
YS3 CAC H2  SING N N 33 
YS3 CAC H3  SING N N 34 
YS3 CAC H4  SING N N 35 
YS3 CAD H5  SING N N 36 
YS3 CAD H6  SING N N 37 
YS3 CAD H7  SING N N 38 
YS3 CAP H8  SING N N 39 
YS3 CAP H9  SING N N 40 
YS3 CAM H10 SING N N 41 
YS3 CAM H11 SING N N 42 
YS3 CAW H12 SING N N 43 
YS3 CAB H13 SING N N 44 
YS3 CAB H14 SING N N 45 
YS3 CAB H15 SING N N 46 
YS3 CAZ H16 SING N N 47 
YS3 CAN H17 SING N N 48 
YS3 CAN H18 SING N N 49 
YS3 CAQ H19 SING N N 50 
YS3 CAQ H20 SING N N 51 
YS3 CBB H21 SING N N 52 
YS3 CAE H22 SING N N 53 
YS3 CAE H23 SING N N 54 
YS3 CAE H24 SING N N 55 
YS3 CAO H25 SING N N 56 
YS3 CAO H26 SING N N 57 
YS3 CAK H27 SING N N 58 
YS3 CAK H28 SING N N 59 
YS3 CAL H29 SING N N 60 
YS3 CAL H30 SING N N 61 
YS3 CAJ H32 SING N N 62 
YS3 CAI H33 SING N N 63 
YS3 CAS H35 SING N N 64 
YS3 CAS H36 SING N N 65 
YS3 CAR H37 SING N N 66 
YS3 CAR H38 SING N N 67 
YS3 CAX H39 SING N N 68 
YS3 OAF H40 SING N N 69 
YS3 CAA H41 SING N N 70 
YS3 CAA H42 SING N N 71 
YS3 CAY H43 SING N N 72 
YS3 OAG H44 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YS3 SMILES           ACDLabs              12.01 "OC3C(=C)\C(O)C\C(=C\C=C1/CCCC2(C)C(C(C)CCC(O)(C)C)CCC12)C3"                                                                                                                                 
YS3 InChI            InChI                1.03  "InChI=1S/C26H42O3/c1-17(12-14-25(3,4)29)21-10-11-22-20(7-6-13-26(21,22)5)9-8-19-15-23(27)18(2)24(28)16-19/h8-9,17,21-24,27-29H,2,6-7,10-16H2,1,3-5H3/b20-9+/t17-,21-,22+,23-,24-,26-/m1/s1" 
YS3 InChIKey         InChI                1.03  JLJBOAPFTSKXIR-PXIOBPQKSA-N                                                                                                                                                                  
YS3 SMILES_CANONICAL CACTVS               3.370 "C[C@H](CCC(C)(C)O)[C@H]1CC[C@H]2\C(CCC[C@]12C)=C\C=C3C[C@@H](O)C(=C)[C@H](O)C3"                                                                                                             
YS3 SMILES           CACTVS               3.370 "C[CH](CCC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=C)[CH](O)C3"                                                                                                                      
YS3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](CCC(C)(C)O)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](C(=C)[C@@H](C3)O)O)C"                                                                                                          
YS3 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(CCC(C)(C)O)C1CCC2C1(CCCC2=CC=C3CC(C(=C)C(C3)O)O)C"                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YS3 "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,3R,7E,17beta)-17-[(2R)-5-hydroxy-5-methylhexan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol"                                                                   
YS3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-5-methyl-5-oxidanyl-hexan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YS3 "Create component" 2012-04-23 PDBJ 
# 
