data_0L4
# 
_chem_comp.id                                    0L4 
_chem_comp.name                                  "5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H24 N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-02-08 
_chem_comp.pdbx_modified_date                    2012-05-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        571.309 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0L4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DF8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0L4 O2A   O2A O 0 1 N N N 19.789 -16.434 -12.957 2.467  -0.438 2.359  O2A ALY 1  
0L4 PA    PA  P 0 1 N N N 19.535 -16.603 -11.475 2.931  0.749  1.606  PA  ALY 2  
0L4 O1A   O1A O 0 1 N N N 20.221 -15.639 -10.543 3.828  1.678  2.567  O1A ALY 3  
0L4 O3A   O3A O 0 1 N N N 17.961 -16.577 -11.133 3.811  0.274  0.344  O3A ALY 4  
0L4 PB    PB  P 0 1 N N N 16.790 -16.633 -12.237 4.913  -0.878 0.120  PB  ALY 5  
0L4 O3B   O3B O 0 1 N N N 16.505 -15.065 -12.498 5.796  -0.529 -1.181 O3B ALY 6  
0L4 PG    PG  P 0 1 N N N 16.964 -14.269 -13.824 7.199  -1.070 -1.758 PG  ALY 7  
0L4 O2G   O2G O 0 1 N N N 17.951 -15.182 -14.519 7.360  -0.610 -3.293 O2G ALY 8  
0L4 O3T   O3T O 0 1 N N N 17.576 -13.001 -13.278 8.408  -0.462 -0.886 O3T ALY 9  
0L4 O1G   O1G O 0 1 N N N 15.662 -14.029 -14.546 7.228  -2.547 -1.680 O1G ALY 10 
0L4 O1B   O1B O 0 1 N N N 15.576 -17.181 -11.527 4.176  -2.293 -0.095 O1B ALY 11 
0L4 O2B   O2B O 0 1 N N N 17.287 -17.322 -13.486 5.794  -0.956 1.307  O2B ALY 12 
0L4 "O5'" O5* O 0 1 N N N 19.910 -18.095 -10.995 1.657  1.586  1.087  O5* ALY 13 
0L4 "C5'" C5* C 0 1 N N N 19.376 -19.224 -11.681 0.627  2.057  1.959  C5* ALY 14 
0L4 "C4'" C4* C 0 1 N N R 18.753 -20.236 -10.725 -0.425 2.811  1.144  C4* ALY 15 
0L4 "O4'" O4* O 0 1 N N N 19.551 -20.457 -9.557  -1.167 1.895  0.310  O4* ALY 16 
0L4 "C1'" C1* C 0 1 N N R 18.699 -20.797 -8.460  -2.397 2.580  -0.009 C1* ALY 17 
0L4 "C2'" C2* C 0 1 N N N 17.264 -20.559 -8.906  -2.810 3.281  1.304  C2* ALY 18 
0L4 "C3'" C3* C 0 1 N N S 17.401 -19.784 -10.201 -1.483 3.437  2.080  C3* ALY 19 
0L4 "O3'" O3* O 0 1 N N N 16.339 -20.104 -11.100 -1.196 4.818  2.309  O3* ALY 20 
0L4 N9    N9  N 0 1 Y N N 18.906 -19.842 -7.341  -3.424 1.620  -0.420 N9  ALY 21 
0L4 C8    C8  C 0 1 Y N N 19.398 -18.590 -7.502  -3.441 0.298  -0.073 C8  ALY 22 
0L4 C7    C7  C 0 1 Y N N 19.409 -18.000 -6.269  -4.529 -0.303 -0.621 C7  ALY 23 
0L4 C5    C5  C 0 1 Y N N 18.888 -18.912 -5.245  -5.246 0.737  -1.371 C5  ALY 24 
0L4 C6    C6  C 0 1 Y N N 18.634 -18.936 -3.786  -6.414 0.776  -2.144 C6  ALY 25 
0L4 N6    N6  N 0 1 N N N 18.919 -17.857 -3.024  -7.177 -0.363 -2.333 N6  ALY 26 
0L4 N1    N1  N 0 1 Y N N 18.112 -20.071 -3.282  -6.771 1.934  -2.691 N1  ALY 27 
0L4 C2    C2  C 0 1 Y N N 17.837 -21.135 -4.065  -6.046 3.023  -2.512 C2  ALY 28 
0L4 N3    N3  N 0 1 Y N N 18.052 -21.171 -5.397  -4.943 3.032  -1.794 N3  ALY 29 
0L4 C4    C4  C 0 1 Y N N 18.573 -20.100 -6.050  -4.508 1.921  -1.202 C4  ALY 30 
0L4 C42   C42 C 0 1 N N N 19.844 -16.763 -6.013  -4.903 -1.679 -0.492 C42 ALY 31 
0L4 C43   C43 C 0 1 N N N 20.192 -15.658 -5.773  -5.210 -2.808 -0.387 C43 ALY 32 
0L4 C44   C44 C 0 1 N N N 20.624 -14.285 -5.475  -5.595 -4.223 -0.255 C44 ALY 33 
0L4 C45   C45 C 0 1 N N N 21.622 -13.819 -6.530  -5.814 -4.556 1.222  C45 ALY 34 
0L4 C46   C46 C 0 1 N N N 21.244 -14.324 -7.916  -6.213 -6.027 1.359  C46 ALY 35 
0L4 N47   N47 N 0 1 N N N 22.154 -13.780 -8.911  -6.424 -6.347 2.777  N47 ALY 36 
0L4 H1    H1  H 0 1 N N N 20.745 -15.028 -11.048 4.167  2.476  2.138  H1  ALY 37 
0L4 H2    H2  H 0 1 N N N 17.822 -16.075 -14.220 8.184  -0.902 -3.706 H2  ALY 38 
0L4 H3    H3  H 0 1 N N N 17.019 -12.262 -13.492 8.450  0.504  -0.892 H3  ALY 39 
0L4 H4    H4  H 0 1 N N N 15.256 -17.946 -11.991 3.582  -2.315 -0.858 H4  ALY 40 
0L4 H5    H5  H 0 1 N N N 18.604 -18.879 -12.384 0.160  1.210  2.460  H5  ALY 41 
0L4 H6    H6  H 0 1 N N N 20.187 -19.716 -12.239 1.059  2.727  2.703  H6  ALY 42 
0L4 H7    H7  H 0 1 N N N 18.618 -21.185 -11.265 0.047  3.583  0.536  H7  ALY 43 
0L4 H8    H8  H 0 1 N N N 18.839 -21.837 -8.131  -2.229 3.315  -0.797 H8  ALY 44 
0L4 H9    H9  H 0 1 N N N 16.715 -19.971 -8.156  -3.247 4.258  1.094  H9  ALY 45 
0L4 H10   H10 H 0 1 N N N 16.745 -21.514 -9.076  -3.512 2.662  1.863  H10 ALY 46 
0L4 H11   H11 H 0 1 N N N 17.427 -18.705 -9.988  -1.527 2.893  3.024  H11 ALY 47 
0L4 H12   H12 H 0 1 N N N 15.514 -19.805 -10.736 -1.829 5.260  2.890  H12 ALY 48 
0L4 H13   H13 H 0 1 N N N 19.721 -18.142 -8.430  -2.702 -0.193 0.543  H13 ALY 49 
0L4 H14   H14 H 0 1 N N N 18.683 -18.049 -2.071  -6.905 -1.201 -1.928 H14 ALY 50 
0L4 H15   H15 H 0 1 N N N 19.895 -17.651 -3.090  -7.983 -0.323 -2.870 H15 ALY 51 
0L4 H16   H16 H 0 1 N N N 17.418 -22.013 -3.596  -6.371 3.944  -2.974 H16 ALY 52 
0L4 H17   H17 H 0 1 N N N 21.101 -14.259 -4.484  -6.516 -4.402 -0.809 H17 ALY 53 
0L4 H18   H18 H 0 1 N N N 19.750 -13.618 -5.479  -4.802 -4.854 -0.656 H18 ALY 54 
0L4 H19   H19 H 0 1 N N N 22.621 -14.200 -6.271  -4.892 -4.377 1.775  H19 ALY 55 
0L4 H20   H20 H 0 1 N N N 21.641 -12.719 -6.543  -6.607 -3.925 1.623  H20 ALY 56 
0L4 H21   H21 H 0 1 N N N 20.217 -14.008 -8.151  -7.135 -6.206 0.805  H21 ALY 57 
0L4 H22   H22 H 0 1 N N N 21.302 -15.422 -7.931  -5.420 -6.658 0.958  H22 ALY 58 
0L4 H23   H23 H 0 1 N N N 21.898 -14.117 -9.817  -7.109 -5.731 3.189  H23 ALY 59 
0L4 H24   H24 H 0 1 N N N 22.102 -12.781 -8.900  -6.689 -7.313 2.894  H24 ALY 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0L4 O1G   PG    DOUB N N 1  
0L4 O2G   PG    SING N N 2  
0L4 PG    O3T   SING N N 3  
0L4 PG    O3B   SING N N 4  
0L4 O2B   PB    DOUB N N 5  
0L4 O2A   PA    DOUB N N 6  
0L4 O3B   PB    SING N N 7  
0L4 PB    O1B   SING N N 8  
0L4 PB    O3A   SING N N 9  
0L4 "C5'" "O5'" SING N N 10 
0L4 "C5'" "C4'" SING N N 11 
0L4 PA    O3A   SING N N 12 
0L4 PA    "O5'" SING N N 13 
0L4 PA    O1A   SING N N 14 
0L4 "O3'" "C3'" SING N N 15 
0L4 "C4'" "C3'" SING N N 16 
0L4 "C4'" "O4'" SING N N 17 
0L4 "C3'" "C2'" SING N N 18 
0L4 "O4'" "C1'" SING N N 19 
0L4 N47   C46   SING N N 20 
0L4 "C2'" "C1'" SING N N 21 
0L4 "C1'" N9    SING N N 22 
0L4 C46   C45   SING N N 23 
0L4 C8    N9    SING Y N 24 
0L4 C8    C7    DOUB Y N 25 
0L4 N9    C4    SING Y N 26 
0L4 C45   C44   SING N N 27 
0L4 C7    C42   SING N N 28 
0L4 C7    C5    SING Y N 29 
0L4 C4    N3    DOUB Y N 30 
0L4 C4    C5    SING Y N 31 
0L4 C42   C43   TRIP N N 32 
0L4 C43   C44   SING N N 33 
0L4 N3    C2    SING Y N 34 
0L4 C5    C6    DOUB Y N 35 
0L4 C2    N1    DOUB Y N 36 
0L4 C6    N1    SING Y N 37 
0L4 C6    N6    SING N N 38 
0L4 O1A   H1    SING N N 39 
0L4 O2G   H2    SING N N 40 
0L4 O3T   H3    SING N N 41 
0L4 O1B   H4    SING N N 42 
0L4 "C5'" H5    SING N N 43 
0L4 "C5'" H6    SING N N 44 
0L4 "C4'" H7    SING N N 45 
0L4 "C1'" H8    SING N N 46 
0L4 "C2'" H9    SING N N 47 
0L4 "C2'" H10   SING N N 48 
0L4 "C3'" H11   SING N N 49 
0L4 "O3'" H12   SING N N 50 
0L4 C8    H13   SING N N 51 
0L4 N6    H14   SING N N 52 
0L4 N6    H15   SING N N 53 
0L4 C2    H16   SING N N 54 
0L4 C44   H17   SING N N 55 
0L4 C44   H18   SING N N 56 
0L4 C45   H19   SING N N 57 
0L4 C45   H20   SING N N 58 
0L4 C46   H21   SING N N 59 
0L4 C46   H22   SING N N 60 
0L4 N47   H23   SING N N 61 
0L4 N47   H24   SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0L4 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cc(C#CCCCN)c1c(ncnc12)N)CC3O" 
0L4 InChI            InChI                1.03  
"InChI=1S/C16H24N5O12P3/c17-5-3-1-2-4-10-7-21(16-14(10)15(18)19-9-20-16)13-6-11(22)12(31-13)8-30-35(26,27)33-36(28,29)32-34(23,24)25/h7,9,11-13,22H,1,3,5-6,8,17H2,(H,26,27)(H,28,29)(H2,18,19,20)(H2,23,24,25)/t11-,12+,13+/m0/s1" 
0L4 InChIKey         InChI                1.03  MCSGHAFVOBYWGE-YNEHKIRRSA-N 
0L4 SMILES_CANONICAL CACTVS               3.370 "NCCCC#Cc1cn([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)c3ncnc(N)c13" 
0L4 SMILES           CACTVS               3.370 "NCCCC#Cc1cn([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)c3ncnc(N)c13" 
0L4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c(ncnc2n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N)C#CCCCN" 
0L4 SMILES           "OpenEye OEToolkits" 1.7.6 "c1c(c2c(ncnc2n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N)C#CCCCN" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0L4 "SYSTEMATIC NAME" ACDLabs              12.01 "5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 
0L4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[4-azanyl-5-(5-azanylpent-1-ynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0L4 "Create component" 2012-02-08 RCSB 
# 
