data_1D4
# 
_chem_comp.id                                    1D4 
_chem_comp.name                                  "CYCLOTRIDECYL 3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSIDE" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H41 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-05-07 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        355.555 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1D4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2WHW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1D4 O3   O3   O 0 1 N N N 20.053 13.308 12.082 -2.378 2.007  -0.703 O3   1D4 1  
1D4 C12  C12  C 0 1 N N R 20.680 12.046 12.354 -2.786 0.645  -0.564 C12  1D4 2  
1D4 C5   C5   C 0 1 N N S 20.524 11.669 13.832 -1.732 -0.125 0.236  C5   1D4 3  
1D4 O2   O2   O 0 1 N N N 20.827 10.258 14.073 -2.169 -1.473 0.424  O2   1D4 4  
1D4 C6   C6   C 0 1 N N R 20.161 9.305  13.205 -3.392 -1.593 1.155  C6   1D4 5  
1D4 C7   C7   C 0 1 N N N 20.503 7.868  13.614 -3.745 -3.072 1.318  C7   1D4 6  
1D4 C8   C8   C 0 1 N N N 20.450 9.596  11.717 -4.512 -0.882 0.392  C8   1D4 7  
1D4 C9   C9   C 0 1 N N S 19.986 11.036 11.439 -4.124 0.585  0.179  C9   1D4 8  
1D4 N    N    N 0 1 N N N 20.207 11.482 10.052 -5.159 1.257  -0.618 N    1D4 9  
1D4 C10  C10  C 0 1 N N N 21.373 12.339 9.825  -5.451 0.503  -1.844 C10  1D4 10 
1D4 C11  C11  C 0 1 N N N 19.081 12.344 9.713  -6.379 1.467  0.174  C11  1D4 11 
1D4 O1   O1   O 0 1 N N N 21.366 12.495 14.662 -0.495 -0.121 -0.478 O1   1D4 12 
1D4 C4   C4   C 0 1 N N N 21.428 13.946 14.546 0.590  -0.718 0.235  C4   1D4 13 
1D4 C13  C13  C 0 1 N N N 20.107 14.711 14.741 1.576  -1.336 -0.758 C13  1D4 14 
1D4 C14  C14  C 0 1 N N N 19.734 15.511 13.505 2.406  -2.411 -0.055 C14  1D4 15 
1D4 C15  C15  C 0 1 N N N 20.545 16.798 13.377 3.639  -2.738 -0.900 C15  1D4 16 
1D4 C16  C16  C 0 1 N N N 20.653 17.259 11.918 4.892  -2.185 -0.219 C16  1D4 17 
1D4 C17  C17  C 0 1 N N N 21.953 18.024 11.610 5.391  -0.958 -0.984 C17  1D4 18 
1D4 C18  C18  C 0 1 N N N 22.365 19.005 12.691 6.007  0.043  -0.005 C18  1D4 19 
1D4 C19  C19  C 0 1 N N N 23.658 18.628 13.426 5.529  1.455  -0.347 C19  1D4 20 
1D4 C20  C20  C 0 1 N N N 24.518 17.610 12.730 4.744  2.029  0.834  C20  1D4 21 
1D4 C21  C21  C 0 1 N N N 24.855 16.559 13.763 3.626  2.936  0.315  C21  1D4 22 
1D4 C1   C1   C 0 1 N N N 23.757 15.518 13.838 2.326  2.620  1.057  C1   1D4 23 
1D4 C2   C2   C 0 1 N N N 23.748 14.859 15.198 1.506  1.612  0.248  C2   1D4 24 
1D4 C3   C3   C 0 1 N N N 22.348 14.477 15.642 1.300  0.343  1.076  C3   1D4 25 
1D4 H3   H3   H 0 1 N N N 19.914 13.776 12.897 -1.534 2.120  -1.162 H3   1D4 26 
1D4 H12  H12  H 0 1 N N N 21.763 12.075 12.162 -2.895 0.194  -1.550 H12  1D4 27 
1D4 H5   H5   H 0 1 N N N 19.470 11.841 14.096 -1.593 0.351  1.207  H5   1D4 28 
1D4 H9   H9   H 0 1 N N N 18.904 11.004 11.633 -4.028 1.080  1.145  H9   1D4 29 
1D4 H6   H6   H 0 1 N N N 19.074 9.420  13.329 -3.274 -1.136 2.138  H6   1D4 30 
1D4 H71C H71C H 0 0 N N N 20.585 7.240  12.715 -2.946 -3.579 1.861  H71C 1D4 31 
1D4 H72C H72C H 0 0 N N N 21.460 7.859  14.156 -4.677 -3.164 1.875  H72C 1D4 32 
1D4 H73C H73C H 0 0 N N N 19.709 7.474  14.265 -3.862 -3.529 0.335  H73C 1D4 33 
1D4 H81C H81C H 0 0 N N N 21.526 9.496  11.511 -4.657 -1.364 -0.575 H81C 1D4 34 
1D4 H82C H82C H 0 0 N N N 19.919 8.883  11.070 -5.436 -0.934 0.968  H82C 1D4 35 
1D4 H101 H101 H 0 0 N N N 21.467 12.554 8.750  -5.804 -0.495 -1.583 H101 1D4 36 
1D4 H102 H102 H 0 0 N N N 21.248 13.282 10.378 -6.220 1.023  -2.416 H102 1D4 37 
1D4 H103 H103 H 0 0 N N N 22.280 11.825 10.177 -4.545 0.422  -2.445 H103 1D4 38 
1D4 H111 H111 H 0 0 N N N 18.499 12.561 10.621 -6.162 2.137  1.005  H111 1D4 39 
1D4 H112 H112 H 0 0 N N N 19.456 13.285 9.284  -7.150 1.909  -0.458 H112 1D4 40 
1D4 H113 H113 H 0 0 N N N 18.439 11.836 8.978  -6.731 0.510  0.560  H113 1D4 41 
1D4 H4   H4   H 0 1 N N N 21.762 14.115 13.512 0.202  -1.500 0.891  H4   1D4 42 
1D4 H131 H131 H 0 0 N N N 19.306 13.986 14.948 1.023  -1.788 -1.584 H131 1D4 43 
1D4 H132 H132 H 0 0 N N N 20.235 15.412 15.579 2.237  -0.562 -1.148 H132 1D4 44 
1D4 H31C H31C H 0 0 N N N 21.877 15.379 16.060 0.694  0.576  1.952  H31C 1D4 45 
1D4 H32C H32C H 0 0 N N N 22.472 13.653 16.360 2.269  -0.039 1.401  H32C 1D4 46 
1D4 H141 H141 H 0 0 N N N 19.923 14.890 12.617 2.718  -2.048 0.924  H141 1D4 47 
1D4 H142 H142 H 0 0 N N N 18.673 15.789 13.591 1.803  -3.311 0.069  H142 1D4 48 
1D4 H151 H151 H 0 0 N N N 20.049 17.587 13.961 3.730  -3.820 -1.005 H151 1D4 49 
1D4 H152 H152 H 0 0 N N N 21.561 16.603 13.752 3.532  -2.288 -1.887 H152 1D4 50 
1D4 H161 H161 H 0 0 N N N 20.619 16.368 11.274 4.657  -1.904 0.808  H161 1D4 51 
1D4 H162 H162 H 0 0 N N N 19.817 17.949 11.732 5.669  -2.950 -0.215 H162 1D4 52 
1D4 H171 H171 H 0 0 N N N 22.761 17.287 11.495 6.145  -1.266 -1.710 H171 1D4 53 
1D4 H172 H172 H 0 0 N N N 21.770 18.611 10.698 4.556  -0.491 -1.507 H172 1D4 54 
1D4 H181 H181 H 0 0 N N N 22.519 19.985 12.217 5.706  -0.208 1.012  H181 1D4 55 
1D4 H182 H182 H 0 0 N N N 21.561 19.006 13.442 7.095  0.000  -0.080 H182 1D4 56 
1D4 H191 H191 H 0 0 N N N 24.255 19.545 13.540 6.393  2.090  -0.550 H191 1D4 57 
1D4 H192 H192 H 0 0 N N N 23.349 18.171 14.378 4.891  1.422  -1.229 H192 1D4 58 
1D4 H201 H201 H 0 0 N N N 23.976 17.160 11.885 4.311  1.214  1.414  H201 1D4 59 
1D4 H202 H202 H 0 0 N N N 25.429 18.072 12.321 5.415  2.609  1.469  H202 1D4 60 
1D4 H211 H211 H 0 0 N N N 25.799 16.068 13.483 3.897  3.978  0.487  H211 1D4 61 
1D4 H212 H212 H 0 0 N N N 24.954 17.044 14.745 3.487  2.771  -0.752 H212 1D4 62 
1D4 H11C H11C H 0 0 N N N 22.786 16.005 13.666 2.557  2.199  2.035  H11C 1D4 63 
1D4 H12C H12C H 0 0 N N N 23.939 14.751 13.071 1.749  3.536  1.184  H12C 1D4 64 
1D4 H21C H21C H 0 0 N N N 24.361 13.947 15.149 0.538  2.050  0.004  H21C 1D4 65 
1D4 H22C H22C H 0 0 N N N 24.149 15.579 15.926 2.037  1.367  -0.671 H22C 1D4 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1D4 O3  C12  SING N N 1  
1D4 C12 C5   SING N N 2  
1D4 C12 C9   SING N N 3  
1D4 C5  O2   SING N N 4  
1D4 C5  O1   SING N N 5  
1D4 O2  C6   SING N N 6  
1D4 C6  C7   SING N N 7  
1D4 C6  C8   SING N N 8  
1D4 C8  C9   SING N N 9  
1D4 C9  N    SING N N 10 
1D4 N   C10  SING N N 11 
1D4 N   C11  SING N N 12 
1D4 O1  C4   SING N N 13 
1D4 C4  C13  SING N N 14 
1D4 C4  C3   SING N N 15 
1D4 C13 C14  SING N N 16 
1D4 C14 C15  SING N N 17 
1D4 C15 C16  SING N N 18 
1D4 C16 C17  SING N N 19 
1D4 C17 C18  SING N N 20 
1D4 C18 C19  SING N N 21 
1D4 C19 C20  SING N N 22 
1D4 C20 C21  SING N N 23 
1D4 C21 C1   SING N N 24 
1D4 C1  C2   SING N N 25 
1D4 C2  C3   SING N N 26 
1D4 O3  H3   SING N N 27 
1D4 C12 H12  SING N N 28 
1D4 C5  H5   SING N N 29 
1D4 C9  H9   SING N N 30 
1D4 C6  H6   SING N N 31 
1D4 C7  H71C SING N N 32 
1D4 C7  H72C SING N N 33 
1D4 C7  H73C SING N N 34 
1D4 C8  H81C SING N N 35 
1D4 C8  H82C SING N N 36 
1D4 C10 H101 SING N N 37 
1D4 C10 H102 SING N N 38 
1D4 C10 H103 SING N N 39 
1D4 C11 H111 SING N N 40 
1D4 C11 H112 SING N N 41 
1D4 C11 H113 SING N N 42 
1D4 C4  H4   SING N N 43 
1D4 C13 H131 SING N N 44 
1D4 C13 H132 SING N N 45 
1D4 C3  H31C SING N N 46 
1D4 C3  H32C SING N N 47 
1D4 C14 H141 SING N N 48 
1D4 C14 H142 SING N N 49 
1D4 C15 H151 SING N N 50 
1D4 C15 H152 SING N N 51 
1D4 C16 H161 SING N N 52 
1D4 C16 H162 SING N N 53 
1D4 C17 H171 SING N N 54 
1D4 C17 H172 SING N N 55 
1D4 C18 H181 SING N N 56 
1D4 C18 H182 SING N N 57 
1D4 C19 H191 SING N N 58 
1D4 C19 H192 SING N N 59 
1D4 C20 H201 SING N N 60 
1D4 C20 H202 SING N N 61 
1D4 C21 H211 SING N N 62 
1D4 C21 H212 SING N N 63 
1D4 C1  H11C SING N N 64 
1D4 C1  H12C SING N N 65 
1D4 C2  H21C SING N N 66 
1D4 C2  H22C SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1D4 SMILES           ACDLabs              10.04 "O(C1CCCCCCCCCCCC1)C2OC(CC(N(C)C)C2O)C"                                                                                                      
1D4 SMILES_CANONICAL CACTVS               3.352 "C[C@@H]1C[C@@H]([C@@H](O)[C@@H](O1)OC2CCCCCCCCCCCC2)N(C)C"                                                                                  
1D4 SMILES           CACTVS               3.352 "C[CH]1C[CH]([CH](O)[CH](O1)OC2CCCCCCCCCCCC2)N(C)C"                                                                                          
1D4 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C[C@@H]1C[C@@H]([C@H]([C@@H](O1)OC2CCCCCCCCCCCC2)O)N(C)C"                                                                                   
1D4 SMILES           "OpenEye OEToolkits" 1.6.1 "CC1CC(C(C(O1)OC2CCCCCCCCCCCC2)O)N(C)C"                                                                                                      
1D4 InChI            InChI                1.03  "InChI=1S/C21H41NO3/c1-17-16-19(22(2)3)20(23)21(24-17)25-18-14-12-10-8-6-4-5-7-9-11-13-15-18/h17-21,23H,4-16H2,1-3H3/t17-,19+,20-,21+/m1/s1" 
1D4 InChIKey         InChI                1.03  LWQXCAWVTFBYID-PMXSJFBMSA-N                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1D4 "SYSTEMATIC NAME" ACDLabs              10.04 "cyclotridecyl 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranoside" 
1D4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S,3R,4S,6R)-2-cyclotridecyloxy-4-dimethylamino-6-methyl-oxan-3-ol"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1D4 "Create component"  2009-05-07 EBI  
1D4 "Modify descriptor" 2011-06-04 RCSB 
# 
