data_7S4
#

_chem_comp.id                                   7S4
_chem_comp.name                                 "N-{(1R)-1-[N''-cyano-N'-(quinolin-5-yl)carbamimidamido]-2,2-dimethylpropyl}-2-(3,4-dimethoxyphenyl)acetamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H30 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "antagonist A740003"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-12-02
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       474.555
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7S4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5U1U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7S4  C10  C1   C  0  1  Y  N  N  -13.623  -6.481  -10.149  -3.249  -1.000   0.874  C10  7S4   1  
7S4  C13  C2   C  0  1  Y  N  N  -12.473  -6.268   -7.629  -5.001   1.134   0.661  C13  7S4   2  
7S4  C15  C3   C  0  1  Y  N  N  -14.176  -5.627   -9.204  -3.193   0.036   1.788  C15  7S4   3  
7S4  C17  C4   C  0  1  N  N  N  -10.633  -5.537   -6.293  -5.745   3.217   1.535  C17  7S4   4  
7S4  C21  C5   C  0  1  N  N  N  -15.255  -3.340  -15.683   2.648  -0.899   0.776  C21  7S4   5  
7S4  C26  C6   C  0  1  Y  N  N  -17.121  -2.638  -17.157   2.502   1.444   0.316  C26  7S4   6  
7S4  C28  C7   C  0  1  Y  N  N  -19.303  -3.223  -18.024   3.051   3.126   1.947  C28  7S4   7  
7S4  C01  C8   C  0  1  N  N  N  -12.633  -2.505  -11.983   0.608  -3.896  -2.422  C01  7S4   8  
7S4  C02  C9   C  0  1  N  N  N  -12.440  -2.710  -13.473   1.669  -3.618  -1.356  C02  7S4   9  
7S4  C03  C10  C  0  1  N  N  N  -12.627  -1.383  -14.173   1.854  -4.863  -0.485  C03  7S4  10  
7S4  C04  C11  C  0  1  N  N  N  -11.033  -3.213  -13.722   2.995  -3.269  -2.034  C04  7S4  11  
7S4  C05  C12  C  0  1  N  N  R  -13.447  -3.731  -13.995   1.219  -2.446  -0.481  C05  7S4  12  
7S4  N06  N1   N  0  1  N  N  N  -14.092  -4.557  -13.027  -0.051  -2.781   0.169  N06  7S4  13  
7S4  C07  C13  C  0  1  N  N  N  -13.505  -5.771  -12.561  -1.048  -1.875   0.205  C07  7S4  14  
7S4  O08  O1   O  0  1  N  N  N  -12.427  -6.136  -12.980  -0.940  -0.829  -0.399  O08  7S4  15  
7S4  C09  C14  C  0  1  N  N  N  -14.251  -6.596  -11.530  -2.298  -2.163   0.997  C09  7S4  16  
7S4  C11  C15  C  0  1  Y  N  N  -12.497  -7.226   -9.836  -4.179  -0.975  -0.148  C11  7S4  17  
7S4  C12  C16  C  0  1  Y  N  N  -11.923  -7.122   -8.576  -5.058   0.091  -0.259  C12  7S4  18  
7S4  C14  C17  C  0  1  Y  N  N  -13.602  -5.523   -7.944  -4.066   1.102   1.683  C14  7S4  19  
7S4  O16  O2   O  0  1  N  N  N  -11.901  -6.158   -6.344  -5.861   2.182   0.556  O16  7S4  20  
7S4  O18  O3   O  0  1  N  N  N  -10.782  -7.885   -8.273  -5.974   0.117  -1.264  O18  7S4  21  
7S4  C19  C18  C  0  1  N  N  N  -11.045  -9.255   -8.074  -5.975  -0.987  -2.170  C19  7S4  22  
7S4  N20  N2   N  0  1  N  N  N  -14.523  -3.027  -14.621   2.235  -2.180   0.540  N20  7S4  23  
7S4  N22  N3   N  0  1  N  N  N  -15.134  -4.494  -16.529   3.503  -0.650   1.752  N22  7S4  24  
7S4  C23  C19  C  0  1  N  N  N  -14.197  -5.556  -16.395   4.058  -1.674   2.444  C23  7S4  25  
7S4  N24  N4   N  0  1  N  N  N  -13.440  -6.399  -16.292   4.524  -2.533   3.025  N24  7S4  26  
7S4  N25  N5   N  0  1  N  N  N  -16.273  -2.402  -16.031   2.176   0.125   0.002  N25  7S4  27  
7S4  C27  C20  C  0  1  Y  N  N  -18.453  -2.984  -16.941   2.725   1.813   1.627  C27  7S4  28  
7S4  C29  C21  C  0  1  Y  N  N  -18.817  -3.116  -19.322   3.159   4.082   0.982  C29  7S4  29  
7S4  C30  C22  C  0  1  Y  N  N  -17.450  -2.763  -19.548   2.951   3.746  -0.366  C30  7S4  30  
7S4  C31  C23  C  0  1  Y  N  N  -16.619  -2.529  -18.492   2.613   2.412  -0.703  C31  7S4  31  
7S4  C32  C24  C  0  1  Y  N  N  -15.273  -2.181  -18.761   2.396   2.082  -2.052  C32  7S4  32  
7S4  C33  C25  C  0  1  Y  N  N  -14.831  -2.088  -20.065   2.521   3.072  -2.986  C33  7S4  33  
7S4  C34  C26  C  0  1  Y  N  N  -15.714  -2.337  -21.117   2.856   4.364  -2.589  C34  7S4  34  
7S4  N35  N6   N  0  1  Y  N  N  -17.002  -2.667  -20.864   3.057   4.668  -1.330  N35  7S4  35  
7S4  H1   H1   H  0  1  N  N  N  -15.052  -5.044   -9.449  -2.465   0.012   2.585  H1   7S4  36  
7S4  H2   H2   H  0  1  N  N  N  -10.282  -5.504   -5.251  -6.488   3.990   1.336  H2   7S4  37  
7S4  H3   H3   H  0  1  N  N  N   -9.919  -6.111   -6.902  -5.913   2.798   2.527  H3   7S4  38  
7S4  H4   H4   H  0  1  N  N  N  -10.710  -4.513   -6.687  -4.747   3.651   1.488  H4   7S4  39  
7S4  H5   H5   H  0  1  N  N  N  -20.335  -3.490  -17.853   3.221   3.394   2.980  H5   7S4  40  
7S4  H6   H6   H  0  1  N  N  N  -12.500  -3.464  -11.460  -0.337  -4.145  -1.938  H6   7S4  41  
7S4  H7   H7   H  0  1  N  N  N  -11.893  -1.780  -11.614   0.475  -3.009  -3.042  H7   7S4  42  
7S4  H8   H8   H  0  1  N  N  N  -13.647  -2.122  -11.794   0.928  -4.731  -3.045  H8   7S4  43  
7S4  H9   H9   H  0  1  N  N  N  -11.895  -0.658  -13.787   2.175  -5.698  -1.108  H9   7S4  44  
7S4  H10  H10  H  0  1  N  N  N  -12.477  -1.515  -15.255   2.610  -4.665   0.275  H10  7S4  45  
7S4  H11  H11  H  0  1  N  N  N  -13.645  -1.011  -13.987   0.910  -5.111  -0.001  H11  7S4  46  
7S4  H12  H12  H  0  1  N  N  N  -10.893  -4.179  -13.214   2.863  -2.382  -2.655  H12  7S4  47  
7S4  H13  H13  H  0  1  N  N  N  -10.876  -3.341  -14.803   3.751  -3.071  -1.275  H13  7S4  48  
7S4  H14  H14  H  0  1  N  N  N  -10.308  -2.484  -13.330   3.315  -4.104  -2.657  H14  7S4  49  
7S4  H15  H15  H  0  1  N  N  N  -12.941  -4.364  -14.739   1.087  -1.560  -1.102  H15  7S4  50  
7S4  H16  H16  H  0  1  N  N  N  -14.981  -4.277  -12.665  -0.173  -3.654   0.573  H16  7S4  51  
7S4  H17  H17  H  0  1  N  N  N  -15.292  -6.244  -11.478  -2.038  -2.311   2.045  H17  7S4  52  
7S4  H18  H18  H  0  1  N  N  N  -14.236  -7.651  -11.841  -2.774  -3.064   0.610  H18  7S4  53  
7S4  H19  H19  H  0  1  N  N  N  -12.066  -7.888  -10.573  -4.221  -1.785  -0.861  H19  7S4  54  
7S4  H20  H20  H  0  1  N  N  N  -14.034  -4.862   -7.208  -4.020   1.911   2.398  H20  7S4  55  
7S4  H21  H21  H  0  1  N  N  N  -10.106  -9.779   -7.843  -5.003  -1.055  -2.661  H21  7S4  56  
7S4  H22  H22  H  0  1  N  N  N  -11.748  -9.375   -7.237  -6.169  -1.908  -1.620  H22  7S4  57  
7S4  H23  H23  H  0  1  N  N  N  -11.487  -9.680   -8.987  -6.751  -0.841  -2.921  H23  7S4  58  
7S4  H24  H24  H  0  1  N  N  N  -14.763  -2.158  -14.188   2.615  -2.914   1.049  H24  7S4  59  
7S4  H25  H25  H  0  1  N  N  N  -16.394  -1.574  -15.483   1.614  -0.066  -0.765  H25  7S4  60  
7S4  H26  H26  H  0  1  N  N  N  -18.830  -3.068  -15.932   2.645   1.075   2.411  H26  7S4  61  
7S4  H27  H27  H  0  1  N  N  N  -19.473  -3.300  -20.160   3.412   5.096   1.253  H27  7S4  62  
7S4  H28  H28  H  0  1  N  N  N  -14.592  -1.988  -17.945   2.137   1.075  -2.342  H28  7S4  63  
7S4  H29  H29  H  0  1  N  N  N  -13.804  -1.823  -20.271   2.361   2.852  -4.031  H29  7S4  64  
7S4  H30  H30  H  0  1  N  N  N  -15.368  -2.266  -22.138   2.951   5.136  -3.338  H30  7S4  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7S4  C34  N35  DOUB  Y  N   1  
7S4  C34  C33  SING  Y  N   2  
7S4  N35  C30  SING  Y  N   3  
7S4  C33  C32  DOUB  Y  N   4  
7S4  C30  C29  DOUB  Y  N   5  
7S4  C30  C31  SING  Y  N   6  
7S4  C29  C28  SING  Y  N   7  
7S4  C32  C31  SING  Y  N   8  
7S4  C31  C26  DOUB  Y  N   9  
7S4  C28  C27  DOUB  Y  N  10  
7S4  C26  C27  SING  Y  N  11  
7S4  C26  N25  SING  N  N  12  
7S4  N22  C23  SING  N  N  13  
7S4  N22  C21  DOUB  N  N  14  
7S4  C23  N24  TRIP  N  N  15  
7S4  N25  C21  SING  N  N  16  
7S4  C21  N20  SING  N  N  17  
7S4  N20  C05  SING  N  N  18  
7S4  C03  C02  SING  N  N  19  
7S4  C05  C02  SING  N  N  20  
7S4  C05  N06  SING  N  N  21  
7S4  C04  C02  SING  N  N  22  
7S4  C02  C01  SING  N  N  23  
7S4  N06  C07  SING  N  N  24  
7S4  O08  C07  DOUB  N  N  25  
7S4  C07  C09  SING  N  N  26  
7S4  C09  C10  SING  N  N  27  
7S4  C10  C11  DOUB  Y  N  28  
7S4  C10  C15  SING  Y  N  29  
7S4  C11  C12  SING  Y  N  30  
7S4  C15  C14  DOUB  Y  N  31  
7S4  C12  O18  SING  N  N  32  
7S4  C12  C13  DOUB  Y  N  33  
7S4  O18  C19  SING  N  N  34  
7S4  C14  C13  SING  Y  N  35  
7S4  C13  O16  SING  N  N  36  
7S4  O16  C17  SING  N  N  37  
7S4  C15  H1   SING  N  N  38  
7S4  C17  H2   SING  N  N  39  
7S4  C17  H3   SING  N  N  40  
7S4  C17  H4   SING  N  N  41  
7S4  C28  H5   SING  N  N  42  
7S4  C01  H6   SING  N  N  43  
7S4  C01  H7   SING  N  N  44  
7S4  C01  H8   SING  N  N  45  
7S4  C03  H9   SING  N  N  46  
7S4  C03  H10  SING  N  N  47  
7S4  C03  H11  SING  N  N  48  
7S4  C04  H12  SING  N  N  49  
7S4  C04  H13  SING  N  N  50  
7S4  C04  H14  SING  N  N  51  
7S4  C05  H15  SING  N  N  52  
7S4  N06  H16  SING  N  N  53  
7S4  C09  H17  SING  N  N  54  
7S4  C09  H18  SING  N  N  55  
7S4  C11  H19  SING  N  N  56  
7S4  C14  H20  SING  N  N  57  
7S4  C19  H21  SING  N  N  58  
7S4  C19  H22  SING  N  N  59  
7S4  C19  H23  SING  N  N  60  
7S4  N20  H24  SING  N  N  61  
7S4  N25  H25  SING  N  N  62  
7S4  C27  H26  SING  N  N  63  
7S4  C29  H27  SING  N  N  64  
7S4  C32  H28  SING  N  N  65  
7S4  C33  H29  SING  N  N  66  
7S4  C34  H30  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7S4  SMILES            ACDLabs               12.01  "c1(cc(c(OC)cc1)OC)CC(NC(C(C)(C)C)N\C(=N/C#N)Nc2cccc3c2cccn3)=O"  
7S4  InChI             InChI                 1.03   "InChI=1S/C26H30N6O3/c1-26(2,3)24(31-23(33)15-17-11-12-21(34-4)22(14-17)35-5)32-25(29-16-27)30-20-10-6-9-19-18(20)8-7-13-28-19/h6-14,24H,15H2,1-5H3,(H,31,33)(H2,29,30,32)/t24-/m0/s1"  
7S4  InChIKey          InChI                 1.03   PUHSRMSFDASMAE-DEOSSOPVSA-N  
7S4  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(CC(=O)N[C@@H](NC(Nc2cccc3ncccc23)=NC#N)C(C)(C)C)cc1OC"  
7S4  SMILES            CACTVS                3.385  "COc1ccc(CC(=O)N[CH](NC(Nc2cccc3ncccc23)=NC#N)C(C)(C)C)cc1OC"  
7S4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)(C)[C@@H](NC(=O)Cc1ccc(c(c1)OC)OC)N/C(=N\C#N)/Nc2cccc3c2cccn3"  
7S4  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)(C)C(NC(=O)Cc1ccc(c(c1)OC)OC)NC(=NC#N)Nc2cccc3c2cccn3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7S4  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{(1R)-1-[N''-cyano-N'-(quinolin-5-yl)carbamimidamido]-2,2-dimethylpropyl}-2-(3,4-dimethoxyphenyl)acetamide"  
7S4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[(1~{R})-1-[[(~{Z})-~{N}'-cyano-~{N}-quinolin-5-yl-carbamimidoyl]amino]-2,2-dimethyl-propyl]-2-(3,4-dimethoxyphenyl)ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7S4  "Create component"  2016-12-02  RCSB  
7S4  "Initial release"   2017-01-11  RCSB  
7S4  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     7S4
_pdbx_chem_comp_synonyms.name        "antagonist A740003"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
