data_A1AP4
# 
_chem_comp.id                                    A1AP4 
_chem_comp.name                                  "(3S)-3-(cyclohexylmethyl)piperazin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H20 N2 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-29 
_chem_comp.pdbx_modified_date                    2024-05-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        196.289 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AP4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7H70 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AP4 N1  N1  N 0 1 N N N N N N 17.720 0.898  17.595 -1.278 -1.191 0.462  N1  A1AP4 1  
A1AP4 C4  C1  C 0 1 N N N N N N 16.126 -1.005 17.751 0.086  0.841  0.431  C4  A1AP4 2  
A1AP4 C5  C2  C 0 1 N N N N N N 16.853 -1.533 18.985 1.388  0.042  0.341  C5  A1AP4 3  
A1AP4 C6  C3  C 0 1 N N N N N N 15.935 -1.653 20.195 1.827  -0.053 -1.121 C6  A1AP4 4  
A1AP4 C7  C4  C 0 1 N N N N N N 16.687 -2.144 21.428 3.129  -0.852 -1.211 C7  A1AP4 5  
A1AP4 C8  C5  C 0 1 N N N N N N 17.388 -3.470 21.163 4.217  -0.149 -0.397 C8  A1AP4 6  
A1AP4 C10 C6  C 0 1 N N N N N N 17.486 -2.887 18.719 2.476  0.746  1.156  C10 A1AP4 7  
A1AP4 N   N2  N 0 1 N N N N N N 16.366 1.555  15.283 -3.495 0.396  0.002  N   A1AP4 8  
A1AP4 C   C7  C 0 1 N N N N N N 15.638 0.903  16.190 -2.286 0.900  -0.269 C   A1AP4 9  
A1AP4 O   O1  O 0 1 N N N N N N 14.450 0.638  16.009 -2.195 2.080  -0.534 O   A1AP4 10 
A1AP4 C1  C8  C 0 1 N N N N N N 17.798 1.782  15.338 -3.709 -1.001 0.366  C1  A1AP4 11 
A1AP4 C2  C9  C 0 1 N N N N N N 18.417 0.823  16.306 -2.498 -1.841 -0.044 C2  A1AP4 12 
A1AP4 C3  C10 C 0 1 N N R N N N 16.304 0.494  17.491 -1.037 0.066  -0.260 C3  A1AP4 13 
A1AP4 C9  C11 C 0 1 N N N N N N 18.269 -3.391 19.927 3.777  -0.053 1.065  C9  A1AP4 14 
A1AP4 H5  H1  H 0 1 N N N N N N 18.180 0.293  18.245 -1.340 -1.030 1.457  H5  A1AP4 15 
A1AP4 H8  H3  H 0 1 N N N N N N 15.052 -1.205 17.875 -0.172 0.998  1.479  H8  A1AP4 16 
A1AP4 H7  H4  H 0 1 N N N N N N 16.502 -1.551 16.873 0.217  1.806  -0.059 H7  A1AP4 17 
A1AP4 H9  H5  H 0 1 N N N N N N 17.656 -0.824 19.236 1.227  -0.960 0.739  H9  A1AP4 18 
A1AP4 H10 H6  H 0 1 N N N N N N 15.501 -0.666 20.412 1.052  -0.555 -1.701 H10 A1AP4 19 
A1AP4 H11 H7  H 0 1 N N N N N N 15.129 -2.365 19.962 1.988  0.949  -1.519 H11 A1AP4 20 
A1AP4 H12 H8  H 0 1 N N N N N N 17.439 -1.393 21.711 2.968  -1.855 -0.814 H12 A1AP4 21 
A1AP4 H13 H9  H 0 1 N N N N N N 15.972 -2.276 22.254 3.442  -0.921 -2.253 H13 A1AP4 22 
A1AP4 H14 H10 H 0 1 N N N N N N 18.012 -3.726 22.032 5.144  -0.718 -0.461 H14 A1AP4 23 
A1AP4 H15 H11 H 0 1 N N N N N N 16.630 -4.253 21.013 4.377  0.853  -0.795 H15 A1AP4 24 
A1AP4 H18 H12 H 0 1 N N N N N N 18.170 -2.798 17.862 2.636  1.748  0.758  H18 A1AP4 25 
A1AP4 H19 H13 H 0 1 N N N N N N 16.693 -3.611 18.481 2.163  0.814  2.197  H19 A1AP4 26 
A1AP4 H   H14 H 0 1 N N N N N N 15.879 1.922  14.490 -4.264 0.986  -0.046 H   A1AP4 27 
A1AP4 H2  H15 H 0 1 N N N N N N 18.233 1.627  14.339 -3.852 -1.076 1.444  H2  A1AP4 28 
A1AP4 H1  H16 H 0 1 N N N N N N 17.994 2.813  15.667 -4.598 -1.375 -0.142 H1  A1AP4 29 
A1AP4 H4  H17 H 0 1 N N N N N N 18.339 -0.199 15.908 -2.451 -1.909 -1.131 H4  A1AP4 30 
A1AP4 H3  H18 H 0 1 N N N N N N 19.477 1.081  16.448 -2.584 -2.840 0.384  H3  A1AP4 31 
A1AP4 H6  H19 H 0 1 N N N N N N 15.762 1.014  18.295 -0.745 -0.157 -1.286 H6  A1AP4 32 
A1AP4 H16 H20 H 0 1 N N N N N N 19.104 -2.703 20.125 3.617  -1.055 1.463  H16 A1AP4 33 
A1AP4 H17 H21 H 0 1 N N N N N N 18.665 -4.393 19.705 4.552  0.448  1.645  H17 A1AP4 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AP4 C   O   DOUB N N 1  
A1AP4 C   N   SING N N 2  
A1AP4 N   C1  SING N N 3  
A1AP4 C1  C2  SING N N 4  
A1AP4 C2  N1  SING N N 5  
A1AP4 N1  C3  SING N N 6  
A1AP4 C3  C   SING N N 7  
A1AP4 C4  C3  SING N N 8  
A1AP4 C5  C4  SING N N 9  
A1AP4 C5  C6  SING N N 10 
A1AP4 C6  C7  SING N N 11 
A1AP4 C7  C8  SING N N 12 
A1AP4 C8  C9  SING N N 13 
A1AP4 C9  C10 SING N N 14 
A1AP4 C10 C5  SING N N 15 
A1AP4 N1  H5  SING N N 16 
A1AP4 C4  H8  SING N N 17 
A1AP4 C4  H7  SING N N 18 
A1AP4 C5  H9  SING N N 19 
A1AP4 C6  H10 SING N N 20 
A1AP4 C6  H11 SING N N 21 
A1AP4 C7  H12 SING N N 22 
A1AP4 C7  H13 SING N N 23 
A1AP4 C8  H14 SING N N 24 
A1AP4 C8  H15 SING N N 25 
A1AP4 C10 H18 SING N N 26 
A1AP4 C10 H19 SING N N 27 
A1AP4 N   H   SING N N 28 
A1AP4 C1  H2  SING N N 29 
A1AP4 C1  H1  SING N N 30 
A1AP4 C2  H4  SING N N 31 
A1AP4 C2  H3  SING N N 32 
A1AP4 C3  H6  SING N N 33 
A1AP4 C9  H16 SING N N 34 
A1AP4 C9  H17 SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AP4 SMILES           ACDLabs              12.01 O=C1NCCNC1CC1CCCCC1                                                                              
A1AP4 InChI            InChI                1.06  "InChI=1S/C11H20N2O/c14-11-10(12-6-7-13-11)8-9-4-2-1-3-5-9/h9-10,12H,1-8H2,(H,13,14)/t10-/m1/s1" 
A1AP4 InChIKey         InChI                1.06  MWAZDIXAEWBVMS-SNVBAGLBSA-N                                                                      
A1AP4 SMILES_CANONICAL CACTVS               3.385 "O=C1NCCN[C@@H]1CC2CCCCC2"                                                                       
A1AP4 SMILES           CACTVS               3.385 "O=C1NCCN[CH]1CC2CCCCC2"                                                                         
A1AP4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)C[C@@H]2C(=O)NCCN2"                                                                   
A1AP4 SMILES           "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)CC2C(=O)NCCN2"                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AP4 "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-3-(cyclohexylmethyl)piperazin-2-one"    
A1AP4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-3-(cyclohexylmethyl)piperazin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AP4 "Create component" 2024-04-29 RCSB 
A1AP4 "Initial release"  2024-05-29 RCSB 
# 
