data_VE4
#

_chem_comp.id                                   VE4
_chem_comp.name                                 "4-[(E)-({1-carboxy-2-[(3R)-3-hydroxy-2-oxo-2,3-dihydro-1H-indol-3-yl]ethan-1-id-1-yl}iminio)methyl]-2-methyl-5-[(phosphonooxy)methyl]pyridin-1-ium-3-olate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 N3 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-31
_chem_comp.pdbx_modified_date                   2021-01-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       465.351
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VE4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XT0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VE4  C05   C1   C   0  1  N  N  N  82.243  14.338  13.803   3.635   0.287  -0.130  C05   VE4   1  
VE4  C06   C2   C   0  1  Y  N  N  83.258  14.240  12.694   2.961  -1.061  -0.110  C06   VE4   2  
VE4  C07   C3   C   0  1  Y  N  N  83.105  14.968  11.518   1.550  -1.154  -0.121  C07   VE4   3  
VE4  C08   C4   C   0  1  N  N  N  82.049  15.798  11.372   0.752   0.010  -0.146  C08   VE4   4  
VE4  C10   C5   C   0  1  N  N  N  80.246  16.782  10.082  -1.318   0.991  -0.184  C10   VE4   5  
VE4  C11   C6   C   0  1  N  N  N  79.290  17.033  11.194  -2.711   0.987  -0.760  C11   VE4   6  
VE4  C12   C7   C   0  1  N  N  R  78.153  16.016  11.265  -3.717   0.654   0.343  C12   VE4   7  
VE4  C14   C8   C   0  1  Y  N  N  77.305  16.244  12.469  -5.130   0.723  -0.190  C14   VE4   8  
VE4  C15   C9   C   0  1  Y  N  N  76.001  16.534  12.079  -5.666  -0.550  -0.045  C15   VE4   9  
VE4  C17   C10  C   0  1  N  N  N  77.131  16.218  10.127  -3.559  -0.785   0.788  C17   VE4  10  
VE4  C19   C11  C   0  1  Y  N  N  75.016  16.790  13.021  -6.976  -0.781  -0.460  C19   VE4  11  
VE4  C20   C12  C   0  1  Y  N  N  75.369  16.749  14.368  -7.721   0.244  -1.005  C20   VE4  12  
VE4  C21   C13  C   0  1  Y  N  N  76.683  16.450  14.760  -7.176   1.507  -1.145  C21   VE4  13  
VE4  C22   C14  C   0  1  Y  N  N  77.666  16.190  13.802  -5.875   1.744  -0.736  C22   VE4  14  
VE4  C23   C15  C   0  1  N  N  N  80.425  17.949   9.096  -0.831   2.130   0.457  C23   VE4  15  
VE4  C26   C16  C   0  1  Y  N  N  84.081  14.849  10.526   0.954  -2.440  -0.108  C26   VE4  16  
VE4  C28   C17  C   0  1  Y  N  N  85.158  13.999  10.728   1.752  -3.539  -0.085  C28   VE4  17  
VE4  C29   C18  C   0  1  N  N  N  86.206  13.847   9.670   1.131  -4.912  -0.071  C29   VE4  18  
VE4  C31   C19  C   0  1  Y  N  N  84.359  13.404  12.842   3.700  -2.194  -0.087  C31   VE4  19  
VE4  N09   N1   N   1  1  N  N  N  81.385  15.879  10.251  -0.554  -0.090  -0.288  N09   VE4  20  
VE4  N16   N2   N   0  1  N  N  N  75.807  16.542  10.678  -4.725  -1.407   0.528  N16   VE4  21  
VE4  N30   N3   N   0  1  Y  N  N  85.269  13.302  11.862   3.104  -3.411  -0.075  N30   VE4  22  
VE4  O01   O1   O   0  1  N  N  N  81.379  11.530  13.830   5.951   2.142  -1.527  O01   VE4  23  
VE4  O03   O2   O   0  1  N  N  N  79.081  12.276  13.497   5.789   2.255   0.990  O03   VE4  24  
VE4  O04   O3   O   0  1  N  N  N  80.962  13.947  13.364   5.052   0.111  -0.120  O04   VE4  25  
VE4  O13   O4   O   0  1  N  N  N  78.804  14.775  11.275  -3.556   1.541   1.451  O13   VE4  26  
VE4  O18   O5   O   0  1  N  N  N  77.368  16.134   8.952  -2.571  -1.285   1.282  O18   VE4  27  
VE4  O24   O6   O   0  1  N  N  N  80.128  17.815   7.889  -0.118   2.019   1.440  O24   VE4  28  
VE4  O25   O7   O   0  1  N  N  N  80.866  19.047   9.502  -1.150   3.359  -0.011  O25   VE4  29  
VE4  O27   O8   O  -1  1  N  N  N  83.979  15.543   9.371  -0.399  -2.572  -0.117  O27   VE4  30  
VE4  O32   O9   O   0  1  N  N  N  80.300  12.863  15.514   7.591   0.782   0.013  O32   VE4  31  
VE4  P02   P1   P   0  1  N  N  N  80.380  12.618  14.061   6.089   1.342  -0.137  P02   VE4  32  
VE4  H051  H1   H   0  0  N  N  N  82.553  13.683  14.631   3.342   0.826  -1.031  H051  VE4  33  
VE4  H052  H2   H   0  0  N  N  N  82.198  15.379  14.156   3.333   0.857   0.749  H052  VE4  34  
VE4  H081  H3   H   0  0  N  N  N  81.745  16.412  12.207   1.211   0.982  -0.047  H081  VE4  35  
VE4  H111  H5   H   0  0  N  N  N  79.845  17.001  12.143  -2.936   1.971  -1.172  H111  VE4  36  
VE4  H112  H6   H   0  0  N  N  N  78.854  18.033  11.058  -2.776   0.239  -1.550  H112  VE4  37  
VE4  H191  H7   H   0  0  N  N  N  74.004  17.015  12.719  -7.409  -1.765  -0.354  H191  VE4  38  
VE4  H201  H8   H   0  0  N  N  N  74.621  16.950  15.121  -8.736   0.058  -1.326  H201  VE4  39  
VE4  H211  H9   H   0  0  N  N  N  76.936  16.421  15.810  -7.763   2.306  -1.573  H211  VE4  40  
VE4  H221  H10  H   0  0  N  N  N  78.678  15.954  14.094  -5.446   2.730  -0.843  H221  VE4  41  
VE4  H292  H11  H   0  0  N  N  N  87.002  14.588   9.833   0.991  -5.258  -1.095  H292  VE4  42  
VE4  H293  H12  H   0  0  N  N  N  86.632  12.834   9.719   1.788  -5.602   0.459  H293  VE4  43  
VE4  H291  H13  H   0  0  N  N  N  85.753  14.007   8.680   0.166  -4.869   0.434  H291  VE4  44  
VE4  H311  H14  H   0  0  N  N  N  84.482  12.834  13.751   4.778  -2.128  -0.083  H311  VE4  45  
VE4  H161  H15  H   0  0  N  N  N  74.962  16.726  10.176  -4.893  -2.343   0.718  H161  VE4  46  
VE4  H2    H16  H   0  1  N  N  N  80.968  10.818  13.354   6.134   1.605  -2.310  H2    VE4  47  
VE4  H131  H17  H   0  0  N  N  N  79.410  14.741  12.005  -4.169   1.375   2.180  H131  VE4  48  
VE4  H3    H18  H   0  1  N  N  N  80.912  19.658   8.776  -0.767   4.085   0.498  H3    VE4  49  
VE4  H5    H20  H   0  1  N  N  N  79.403  12.749  15.806   8.270   1.470   0.011  H5    VE4  50  
VE4  H091  H21  H   0  0  N  N  N  81.664  15.304   9.482  -0.957  -0.954  -0.469  H091  VE4  51  
VE4  H301  H22  H   0  0  N  N  N  86.050  12.689  11.983   3.655  -4.209  -0.058  H301  VE4  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VE4  O24  C23   DOUB  N  N   1  
VE4  O18  C17   DOUB  N  N   2  
VE4  C23  O25   SING  N  N   3  
VE4  C23  C10   SING  N  N   4  
VE4  O27  C26   SING  N  N   5  
VE4  C29  C28   SING  N  N   6  
VE4  C10  N09   DOUB  N  N   7  
VE4  C10  C11   SING  N  N   8  
VE4  C17  N16   SING  N  N   9  
VE4  C17  C12   SING  N  N  10  
VE4  N09  C08   SING  N  N  11  
VE4  C26  C28   DOUB  Y  N  12  
VE4  C26  C07   SING  Y  N  13  
VE4  N16  C15   SING  N  N  14  
VE4  C28  N30   SING  Y  N  15  
VE4  C11  C12   SING  N  N  16  
VE4  C12  O13   SING  N  N  17  
VE4  C12  C14   SING  N  N  18  
VE4  C08  C07   DOUB  N  N  19  
VE4  C07  C06   SING  Y  N  20  
VE4  N30  C31   SING  Y  N  21  
VE4  C15  C14   DOUB  Y  N  22  
VE4  C15  C19   SING  Y  N  23  
VE4  C14  C22   SING  Y  N  24  
VE4  C06  C31   DOUB  Y  N  25  
VE4  C06  C05   SING  N  N  26  
VE4  C19  C20   DOUB  Y  N  27  
VE4  O04  C05   SING  N  N  28  
VE4  O04  P02   SING  N  N  29  
VE4  O03  P02   DOUB  N  N  30  
VE4  C22  C21   DOUB  Y  N  31  
VE4  O01  P02   SING  N  N  32  
VE4  P02  O32   SING  N  N  33  
VE4  C20  C21   SING  Y  N  34  
VE4  C05  H051  SING  N  N  35  
VE4  C05  H052  SING  N  N  36  
VE4  C08  H081  SING  N  N  37  
VE4  C11  H111  SING  N  N  38  
VE4  C11  H112  SING  N  N  39  
VE4  C19  H191  SING  N  N  40  
VE4  C20  H201  SING  N  N  41  
VE4  C21  H211  SING  N  N  42  
VE4  C22  H221  SING  N  N  43  
VE4  C29  H292  SING  N  N  44  
VE4  C29  H293  SING  N  N  45  
VE4  C29  H291  SING  N  N  46  
VE4  C31  H311  SING  N  N  47  
VE4  N16  H161  SING  N  N  48  
VE4  O01  H2    SING  N  N  49  
VE4  O13  H131  SING  N  N  50  
VE4  O25  H3    SING  N  N  51  
VE4  O32  H5    SING  N  N  52  
VE4  N09  H091  SING  N  N  53  
VE4  N30  H301  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VE4  SMILES            ACDLabs               12.01  "C(c1c[nH+]c(c(c1[C@H]=[NH+][C-](CC3(O)c2ccccc2NC3=O)C(O)=O)[O-])C)OP(O)(=O)O"  
VE4  InChI             InChI                 1.03   "InChI=1S/C19H20N3O9P/c1-10-16(23)12(11(7-20-10)9-31-32(28,29)30)8-21-15(17(24)25)6-19(27)13-4-2-3-5-14(13)22-18(19)26/h2-5,7-8,21,23,27H,6,9H2,1H3,(H,22,26)(H,24,25)(H2,28,29,30)/b21-8+/t19-/m1/s1"  
VE4  InChIKey          InChI                 1.03   KVWUPOTUZSGNFK-JWWNMXMMSA-N  
VE4  SMILES_CANONICAL  CACTVS                3.385  "Cc1[nH+]cc(CO[P](O)(O)=O)c(C=[NH+][C-](C[C@]2(O)C(=O)Nc3ccccc23)C(O)=O)c1[O-]"  
VE4  SMILES            CACTVS                3.385  "Cc1[nH+]cc(CO[P](O)(O)=O)c(C=[NH+][C-](C[C]2(O)C(=O)Nc3ccccc23)C(O)=O)c1[O-]"  
VE4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)/C=[NH+]/[C-](C[C@]2(c3ccccc3NC2=O)O)C(=O)O)[O-]"  
VE4  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)C=[NH+][C-](CC2(c3ccccc3NC2=O)O)C(=O)O)[O-]"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VE4  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-[(E)-({1-carboxy-2-[(3R)-3-hydroxy-2-oxo-2,3-dihydro-1H-indol-3-yl]ethan-1-id-1-yl}iminio)methyl]-2-methyl-5-[(phosphonooxy)methyl]pyridin-1-ium-3-olate"  
VE4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-methyl-4-[(~{E})-[1-oxidanyl-1-oxidanylidene-3-[(3~{R})-3-oxidanyl-2-oxidanylidene-1~{H}-indol-3-yl]propan-2-yl]azaniumylidenemethyl]-5-(phosphonooxymethyl)pyridin-1-ium-3-olate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VE4  "Create component"  2020-07-31  RCSB  
VE4  "Modify charge"     2020-10-05  RCSB  
VE4  "Initial release"   2021-02-03  RCSB  
##
