data_VI4
# 
_chem_comp.id                                    VI4 
_chem_comp.name                                  "13-(3-Amino-2,3,6-trideoxy-alpha-L-ribo-hexopyranosyl)-6,7,12,13-tetrahydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazol-5-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H24 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-22 
_chem_comp.pdbx_modified_date                    2024-10-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        440.494 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VI4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8K1X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VI4 C10 C1  C 0 1 Y N N N N N 9.115  45.830 23.517 2.655  2.465  0.172  C10 VI4 1  
VI4 C11 C2  C 0 1 Y N N N N N 7.919  46.130 24.158 2.728  3.841  0.142  C11 VI4 2  
VI4 C12 C3  C 0 1 Y N N N N N 7.929  46.950 25.289 1.574  4.608  0.068  C12 VI4 3  
VI4 C13 C4  C 0 1 Y N N N N N 9.132  47.468 25.780 0.339  4.001  0.022  C13 VI4 4  
VI4 C14 C5  C 0 1 Y N N N N N 10.351 47.163 25.130 0.249  2.610  0.052  C14 VI4 5  
VI4 C16 C6  C 0 1 Y N N N N N 12.415 48.340 26.369 -2.280 1.842  -0.054 C16 VI4 6  
VI4 C18 C7  C 0 1 Y N N N N N 14.567 47.858 25.295 -2.566 -0.553 -0.012 C18 VI4 7  
VI4 C15 C8  C 0 1 Y N N N N N 11.754 47.523 25.363 -0.880 1.667  0.019  C15 VI4 8  
VI4 C17 C9  C 0 1 Y N N N N N 13.797 48.505 26.341 -3.108 0.725  -0.068 C17 VI4 9  
VI4 C19 C10 C 0 1 Y N N N N N 15.989 47.819 24.970 -3.161 -1.903 -0.010 C19 VI4 10 
VI4 C24 C11 C 0 1 Y N N N N N 16.138 47.033 23.853 -2.093 -2.809 0.066  C24 VI4 11 
VI4 C23 C12 C 0 1 Y N N N N N 17.439 46.821 23.313 -2.358 -4.175 0.084  C23 VI4 12 
VI4 C22 C13 C 0 1 Y N N N N N 18.544 47.406 23.916 -3.660 -4.626 0.028  C22 VI4 13 
VI4 C21 C14 C 0 1 Y N N N N N 18.387 48.207 25.052 -4.714 -3.729 -0.047 C21 VI4 14 
VI4 C20 C15 C 0 1 Y N N N N N 17.111 48.416 25.579 -4.471 -2.372 -0.063 C20 VI4 15 
VI4 C01 C16 C 0 1 N N N N N N 12.122 42.905 20.845 3.195  -2.701 1.769  C01 VI4 16 
VI4 C02 C17 C 0 1 N N S N N N 13.292 43.704 21.370 3.924  -1.413 1.379  C02 VI4 17 
VI4 C03 C18 C 0 1 N N R N N N 13.723 44.715 20.313 4.681  -1.633 0.067  C03 VI4 18 
VI4 C04 C19 C 0 1 N N R N N N 12.656 45.723 20.048 3.678  -1.954 -1.045 C04 VI4 19 
VI4 C05 C20 C 0 1 N N N N N N 12.216 46.389 21.281 2.661  -0.813 -1.145 C05 VI4 20 
VI4 C06 C21 C 0 1 N N R N N N 11.885 45.418 22.402 1.981  -0.626 0.214  C06 VI4 21 
VI4 C09 C22 C 0 1 Y N N N N N 10.337 46.359 24.018 1.416  1.832  0.127  C09 VI4 22 
VI4 C26 C23 C 0 1 Y N N N N N 13.948 47.078 24.331 -1.176 -0.734 0.061  C26 VI4 23 
VI4 C27 C24 C 0 1 Y N N N N N 12.486 46.899 24.359 -0.331 0.385  0.076  C27 VI4 24 
VI4 C28 C25 C 0 1 N N N N N N 14.205 49.415 27.517 -4.523 1.242  -0.150 C28 VI4 25 
VI4 C30 C26 C 0 1 N N N N N N 11.880 49.142 27.574 -3.123 3.046  -0.123 C30 VI4 26 
VI4 N08 N1  N 0 1 Y N N N N N 11.616 46.199 23.567 1.048  0.501  0.142  N08 VI4 27 
VI4 N25 N2  N 0 1 Y N N N N N 14.899 46.594 23.480 -0.914 -2.088 0.106  N25 VI4 28 
VI4 N29 N3  N 0 1 N N N N N N 13.003 49.778 28.242 -4.422 2.705  -0.179 N29 VI4 29 
VI4 N32 N4  N 0 1 N N N N N N 13.204 46.793 19.117 4.390  -2.092 -2.323 N32 VI4 30 
VI4 O07 O1  O 0 1 N N N N N N 12.930 44.369 22.623 2.973  -0.361 1.208  O07 VI4 31 
VI4 O31 O2  O 0 1 N N N N N N 10.744 49.226 27.900 -2.704 4.187  -0.129 O31 VI4 32 
VI4 O33 O3  O 0 1 N N N N N N 14.894 45.409 20.787 5.405  -0.447 -0.270 O33 VI4 33 
VI4 H1  H1  H 0 1 N N N N N N 9.117  45.197 22.642 3.559  1.878  0.226  H1  VI4 34 
VI4 H2  H2  H 0 1 N N N N N N 6.987  45.732 23.784 3.692  4.326  0.177  H2  VI4 35 
VI4 H3  H3  H 0 1 N N N N N N 7.001  47.186 25.788 1.646  5.685  0.045  H3  VI4 36 
VI4 H4  H4  H 0 1 N N N N N N 9.130  48.101 26.655 -0.558 4.601  -0.035 H4  VI4 37 
VI4 H5  H5  H 0 1 N N N N N N 17.566 46.205 22.435 -1.544 -4.882 0.141  H5  VI4 38 
VI4 H6  H6  H 0 1 N N N N N N 19.530 47.242 23.506 -3.860 -5.687 0.042  H6  VI4 39 
VI4 H7  H7  H 0 1 N N N N N N 19.248 48.661 25.519 -5.729 -4.095 -0.091 H7  VI4 40 
VI4 H8  H8  H 0 1 N N N N N N 16.984 49.036 26.454 -5.294 -1.675 -0.120 H8  VI4 41 
VI4 H9  H9  H 0 1 N N N N N N 11.807 42.174 21.604 2.490  -2.972 0.983  H9  VI4 42 
VI4 H10 H10 H 0 1 N N N N N N 11.286 43.584 20.620 3.921  -3.504 1.899  H10 VI4 43 
VI4 H11 H11 H 0 1 N N N N N N 12.421 42.376 19.928 2.655  -2.545 2.703  H11 VI4 44 
VI4 H12 H12 H 0 1 N N N N N N 14.131 43.017 21.555 4.628  -1.142 2.165  H12 VI4 45 
VI4 H13 H13 H 0 1 N N N N N N 13.955 44.178 19.381 5.377  -2.464 0.183  H13 VI4 46 
VI4 H14 H14 H 0 1 N N N N N N 11.799 45.231 19.565 3.161  -2.885 -0.812 H14 VI4 47 
VI4 H15 H15 H 0 1 N N N N N N 13.020 47.057 21.623 3.172  0.107  -1.427 H15 VI4 48 
VI4 H16 H16 H 0 1 N N N N N N 11.317 46.982 21.056 1.911  -1.059 -1.897 H16 VI4 49 
VI4 H17 H17 H 0 1 N N N N N N 10.958 44.900 22.116 1.437  -1.533 0.476  H17 VI4 50 
VI4 H18 H18 H 0 1 N N N N N N 14.895 48.876 28.184 -5.002 0.881  -1.060 H18 VI4 51 
VI4 H19 H19 H 0 1 N N N N N N 14.715 46.002 22.695 -0.027 -2.479 0.159  H19 VI4 52 
VI4 H20 H20 H 0 1 N N N N N N 12.494 47.473 18.935 3.748  -2.304 -3.072 H20 VI4 53 
VI4 H21 H21 H 0 1 N N N N N N 13.989 47.239 19.547 4.926  -1.262 -2.530 H21 VI4 54 
VI4 H23 H23 H 0 1 N N N N N N 15.586 44.782 20.961 6.056  -0.182 0.394  H23 VI4 55 
VI4 H24 H24 H 0 1 N N N N N N 14.698 50.321 27.134 -5.090 0.923  0.724  H24 VI4 56 
VI4 H25 H25 H 0 1 N N N N N N 12.955 50.360 29.054 -5.168 3.324  -0.231 H25 VI4 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VI4 N32 C04 SING N N 1  
VI4 C04 C03 SING N N 2  
VI4 C04 C05 SING N N 3  
VI4 C03 O33 SING N N 4  
VI4 C03 C02 SING N N 5  
VI4 C01 C02 SING N N 6  
VI4 C05 C06 SING N N 7  
VI4 C02 O07 SING N N 8  
VI4 C06 O07 SING N N 9  
VI4 C06 N08 SING N N 10 
VI4 C23 C24 DOUB Y N 11 
VI4 C23 C22 SING Y N 12 
VI4 N25 C24 SING Y N 13 
VI4 N25 C26 SING Y N 14 
VI4 C10 C09 SING Y N 15 
VI4 C10 C11 DOUB Y N 16 
VI4 N08 C09 SING Y N 17 
VI4 N08 C27 SING Y N 18 
VI4 C24 C19 SING Y N 19 
VI4 C22 C21 DOUB Y N 20 
VI4 C09 C14 DOUB Y N 21 
VI4 C11 C12 SING Y N 22 
VI4 C26 C27 SING Y N 23 
VI4 C26 C18 DOUB Y N 24 
VI4 C27 C15 DOUB Y N 25 
VI4 C19 C18 SING Y N 26 
VI4 C19 C20 DOUB Y N 27 
VI4 C21 C20 SING Y N 28 
VI4 C14 C15 SING Y N 29 
VI4 C14 C13 SING Y N 30 
VI4 C12 C13 DOUB Y N 31 
VI4 C18 C17 SING Y N 32 
VI4 C15 C16 SING Y N 33 
VI4 C17 C16 DOUB Y N 34 
VI4 C17 C28 SING N N 35 
VI4 C16 C30 SING N N 36 
VI4 C28 N29 SING N N 37 
VI4 C30 O31 DOUB N N 38 
VI4 C30 N29 SING N N 39 
VI4 C10 H1  SING N N 40 
VI4 C11 H2  SING N N 41 
VI4 C12 H3  SING N N 42 
VI4 C13 H4  SING N N 43 
VI4 C23 H5  SING N N 44 
VI4 C22 H6  SING N N 45 
VI4 C21 H7  SING N N 46 
VI4 C20 H8  SING N N 47 
VI4 C01 H9  SING N N 48 
VI4 C01 H10 SING N N 49 
VI4 C01 H11 SING N N 50 
VI4 C02 H12 SING N N 51 
VI4 C03 H13 SING N N 52 
VI4 C04 H14 SING N N 53 
VI4 C05 H15 SING N N 54 
VI4 C05 H16 SING N N 55 
VI4 C06 H17 SING N N 56 
VI4 C28 H18 SING N N 57 
VI4 N25 H19 SING N N 58 
VI4 N32 H20 SING N N 59 
VI4 N32 H21 SING N N 60 
VI4 O33 H23 SING N N 61 
VI4 C28 H24 SING N N 62 
VI4 N29 H25 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VI4 InChI            InChI                1.06  "InChI=1S/C26H24N4O3/c1-12-25(31)16(27)10-19(33-12)30-18-9-5-3-7-14(18)21-22-15(11-28-26(22)32)20-13-6-2-4-8-17(13)29-23(20)24(21)30/h2-9,12,16,19,25,29,31H,10-11,27H2,1H3,(H,28,32)/t12-,16+,19+,25-/m0/s1" 
VI4 InChIKey         InChI                1.06  QNQXRLNOOGRQEB-FUJFFIKUSA-N                                                                                                                                                                                   
VI4 SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1O[C@H](C[C@@H](N)[C@H]1O)n2c3ccccc3c4c2c5[nH]c6ccccc6c5c7CNC(=O)c47"                                                                                                                                 
VI4 SMILES           CACTVS               3.385 "C[CH]1O[CH](C[CH](N)[CH]1O)n2c3ccccc3c4c2c5[nH]c6ccccc6c5c7CNC(=O)c47"                                                                                                                                       
VI4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@H]([C@@H](C[C@@H](O1)n2c3ccccc3c4c2c5c(c6ccccc6[nH]5)c7c4C(=O)NC7)N)O"                                                                                                                            
VI4 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C(CC(O1)n2c3ccccc3c4c2c5c(c6ccccc6[nH]5)c7c4C(=O)NC7)N)O"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VI4 "Create component" 2023-07-22 PDBJ 
VI4 "Initial release"  2024-10-16 RCSB 
# 
