data_YL4
# 
_chem_comp.id                                    YL4 
_chem_comp.name                                  "[(R)-(2,3-dihydro-1-benzofuran-5-yl){[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methyl]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H20 N3 O4 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-12 
_chem_comp.pdbx_modified_date                    2017-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        453.451 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YL4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5JUZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YL4 CAT C1  C 0 1 Y N N 8.183  69.294 25.041 4.186  -0.185 0.735  CAT YL4 1  
YL4 CAU C2  C 0 1 Y N N 8.534  69.136 23.736 4.893  -1.329 1.034  CAU YL4 2  
YL4 CAY C3  C 0 1 N N N 8.896  67.980 23.034 6.225  -1.551 1.723  CAY YL4 3  
YL4 CAZ C4  C 0 1 N N N 8.707  68.439 21.550 6.547  -3.013 1.331  CAZ YL4 4  
YL4 OBA O1  O 0 1 N N N 8.988  69.860 21.586 5.245  -3.570 1.084  OBA YL4 5  
YL4 CAV C5  C 0 1 Y N N 8.619  70.201 22.865 4.401  -2.580 0.686  CAV YL4 6  
YL4 CAW C6  C 0 1 Y N N 8.328  71.437 23.296 3.182  -2.661 0.016  CAW YL4 7  
YL4 CAX C7  C 0 1 Y N N 7.948  71.660 24.615 2.477  -1.514 -0.285 CAX YL4 8  
YL4 CAS C8  C 0 1 Y N N 7.871  70.578 25.519 2.974  -0.274 0.074  CAS YL4 9  
YL4 CAR C9  C 0 1 N N R 7.487  70.806 26.852 2.194  0.975  -0.247 CAR YL4 10 
YL4 PBB P1  P 0 1 N N N 8.881  71.728 27.795 2.583  1.514  -1.945 PBB YL4 11 
YL4 OBD O2  O 0 1 N N N 8.576  71.714 29.446 1.654  2.770  -2.335 OBD YL4 12 
YL4 OBE O3  O 0 1 N N N 10.334 70.957 27.505 4.132  1.945  -2.029 OBE YL4 13 
YL4 OBC O4  O 0 1 N N N 8.750  73.354 27.282 2.329  0.401  -2.886 OBC YL4 14 
YL4 NAQ N1  N 0 1 N N N 6.277  71.692 26.887 0.760  0.696  -0.140 NAQ YL4 15 
YL4 C4  C10 C 0 1 Y N N 5.068  71.335 27.358 -0.071 1.587  0.514  C4  YL4 16 
YL4 N3  N2  N 0 1 Y N N 4.743  70.017 27.434 0.419  2.696  1.047  N3  YL4 17 
YL4 C2  C11 C 0 1 Y N N 3.499  69.636 27.922 -0.363 3.557  1.675  C2  YL4 18 
YL4 N1  N3  N 0 1 Y N N 2.630  70.658 28.309 -1.655 3.364  1.803  N1  YL4 19 
YL4 C6  C12 C 0 1 Y N N 2.997  71.960 28.213 -2.244 2.273  1.298  C6  YL4 20 
YL4 SAI S1  S 0 1 Y N N 2.131  73.371 28.609 -3.923 1.753  1.314  SAI YL4 21 
YL4 C5  C13 C 0 1 Y N N 4.214  72.342 27.735 -1.464 1.331  0.619  C5  YL4 22 
YL4 CAL C14 C 0 1 Y N N 4.371  73.725 27.715 -2.252 0.220  0.132  CAL YL4 23 
YL4 CAH C15 C 0 1 Y N N 3.330  74.477 28.169 -3.551 0.290  0.423  CAH YL4 24 
YL4 CAE C16 C 0 1 Y N N 3.219  75.860 28.240 -4.551 -0.727 0.032  CAE YL4 25 
YL4 CAD C17 C 0 1 Y N N 1.949  76.453 28.147 -4.157 -1.857 -0.686 CAD YL4 26 
YL4 CAC C18 C 0 1 Y N N 1.774  77.834 28.205 -5.095 -2.802 -1.048 CAC YL4 27 
YL4 CAB C19 C 0 1 Y N N 2.846  78.712 28.356 -6.423 -2.631 -0.700 CAB YL4 28 
YL4 CAA C20 C 0 1 N N N 2.577  80.104 28.390 -7.442 -3.667 -1.099 CAA YL4 29 
YL4 CAG C21 C 0 1 Y N N 4.133  78.166 28.448 -6.820 -1.513 0.012  CAG YL4 30 
YL4 CAF C22 C 0 1 Y N N 4.307  76.769 28.385 -5.891 -0.564 0.385  CAF YL4 31 
YL4 H1  H1  H 0 1 N N N 8.145  68.441 25.703 4.576  0.781  1.020  H1  YL4 32 
YL4 H2  H2  H 0 1 N N N 8.234  67.137 23.281 6.982  -0.869 1.337  H2  YL4 33 
YL4 H3  H3  H 0 1 N N N 9.940  67.698 23.237 6.127  -1.449 2.804  H3  YL4 34 
YL4 H4  H4  H 0 1 N N N 7.677  68.252 21.211 7.159  -3.045 0.429  H4  YL4 35 
YL4 H5  H5  H 0 1 N N N 9.412  67.917 20.886 7.041  -3.533 2.152  H5  YL4 36 
YL4 H6  H6  H 0 1 N N N 8.389  72.269 22.611 2.788  -3.625 -0.269 H6  YL4 37 
YL4 H7  H7  H 0 1 N N N 7.712  72.660 24.948 1.533  -1.584 -0.804 H7  YL4 38 
YL4 H8  H8  H 0 1 N N N 7.307  69.872 27.404 2.464  1.763  0.455  H8  YL4 39 
YL4 H9  H9  H 0 1 N N N 8.398  72.599 29.743 0.706  2.582  -2.306 H9  YL4 40 
YL4 H10 H10 H 0 1 N N N 10.929 71.556 27.069 4.750  1.236  -1.806 H10 YL4 41 
YL4 H11 H11 H 0 1 N N N 6.547  72.490 27.426 0.393  -0.114 -0.528 H11 YL4 42 
YL4 H12 H12 H 0 1 N N N 3.217  68.596 27.998 0.076  4.449  2.096  H12 YL4 43 
YL4 H13 H13 H 0 1 N N N 5.280  74.183 27.355 -1.820 -0.607 -0.413 H13 YL4 44 
YL4 H14 H14 H 0 1 N N N 1.082  75.820 28.027 -3.121 -1.991 -0.959 H14 YL4 45 
YL4 H15 H15 H 0 1 N N N 0.775  78.237 28.131 -4.792 -3.677 -1.604 H15 YL4 46 
YL4 H16 H16 H 0 1 N N N 2.407  80.420 29.430 -7.522 -4.419 -0.314 H16 YL4 47 
YL4 H17 H17 H 0 1 N N N 3.435  80.653 27.976 -8.410 -3.188 -1.243 H17 YL4 48 
YL4 H18 H18 H 0 1 N N N 1.680  80.319 27.790 -7.131 -4.144 -2.028 H18 YL4 49 
YL4 H19 H19 H 0 1 N N N 4.989  78.814 28.567 -7.858 -1.386 0.280  H19 YL4 50 
YL4 H20 H20 H 0 1 N N N 5.308  76.370 28.449 -6.201 0.306  0.945  H20 YL4 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YL4 CAZ OBA SING N N 1  
YL4 CAZ CAY SING N N 2  
YL4 OBA CAV SING N N 3  
YL4 CAV CAW SING Y N 4  
YL4 CAV CAU DOUB Y N 5  
YL4 CAY CAU SING N N 6  
YL4 CAW CAX DOUB Y N 7  
YL4 CAU CAT SING Y N 8  
YL4 CAX CAS SING Y N 9  
YL4 CAT CAS DOUB Y N 10 
YL4 CAS CAR SING N N 11 
YL4 CAR NAQ SING N N 12 
YL4 CAR PBB SING N N 13 
YL4 NAQ C4  SING N N 14 
YL4 OBC PBB DOUB N N 15 
YL4 C4  N3  DOUB Y N 16 
YL4 C4  C5  SING Y N 17 
YL4 N3  C2  SING Y N 18 
YL4 OBE PBB SING N N 19 
YL4 CAL C5  SING Y N 20 
YL4 CAL CAH DOUB Y N 21 
YL4 C5  C6  DOUB Y N 22 
YL4 PBB OBD SING N N 23 
YL4 C2  N1  DOUB Y N 24 
YL4 CAD CAC DOUB Y N 25 
YL4 CAD CAE SING Y N 26 
YL4 CAH CAE SING N N 27 
YL4 CAH SAI SING Y N 28 
YL4 CAC CAB SING Y N 29 
YL4 C6  N1  SING Y N 30 
YL4 C6  SAI SING Y N 31 
YL4 CAE CAF DOUB Y N 32 
YL4 CAB CAA SING N N 33 
YL4 CAB CAG DOUB Y N 34 
YL4 CAF CAG SING Y N 35 
YL4 CAT H1  SING N N 36 
YL4 CAY H2  SING N N 37 
YL4 CAY H3  SING N N 38 
YL4 CAZ H4  SING N N 39 
YL4 CAZ H5  SING N N 40 
YL4 CAW H6  SING N N 41 
YL4 CAX H7  SING N N 42 
YL4 CAR H8  SING N N 43 
YL4 OBD H9  SING N N 44 
YL4 OBE H10 SING N N 45 
YL4 NAQ H11 SING N N 46 
YL4 C2  H12 SING N N 47 
YL4 CAL H13 SING N N 48 
YL4 CAD H14 SING N N 49 
YL4 CAC H15 SING N N 50 
YL4 CAA H16 SING N N 51 
YL4 CAA H17 SING N N 52 
YL4 CAA H18 SING N N 53 
YL4 CAG H19 SING N N 54 
YL4 CAF H20 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YL4 SMILES           ACDLabs              12.01 "c1c(ccc2c1CCO2)C(Nc3ncnc4sc(cc34)c5ccc(cc5)C)P(O)(O)=O"                                                                                                                                  
YL4 InChI            InChI                1.03  "InChI=1S/C22H20N3O4PS/c1-13-2-4-14(5-3-13)19-11-17-20(23-12-24-22(17)31-19)25-21(30(26,27)28)16-6-7-18-15(10-16)8-9-29-18/h2-7,10-12,21H,8-9H2,1H3,(H,23,24,25)(H2,26,27,28)/t21-/m1/s1" 
YL4 InChIKey         InChI                1.03  ORNKDTLGUAHCGN-OAQYLSRUSA-N                                                                                                                                                               
YL4 SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(cc1)c2sc3ncnc(N[C@@H](c4ccc5OCCc5c4)[P](O)(O)=O)c3c2"                                                                                                                             
YL4 SMILES           CACTVS               3.385 "Cc1ccc(cc1)c2sc3ncnc(N[CH](c4ccc5OCCc5c4)[P](O)(O)=O)c3c2"                                                                                                                               
YL4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1)c2cc3c(ncnc3s2)N[C@@H](c4ccc5c(c4)CCO5)P(=O)(O)O"                                                                                                                             
YL4 SMILES           "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1)c2cc3c(ncnc3s2)NC(c4ccc5c(c4)CCO5)P(=O)(O)O"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YL4 "SYSTEMATIC NAME" ACDLabs              12.01 "[(R)-(2,3-dihydro-1-benzofuran-5-yl){[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methyl]phosphonic acid"   
YL4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(~{R})-2,3-dihydro-1-benzofuran-5-yl-[[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino]methyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YL4 "Create component" 2016-05-12 RCSB 
YL4 "Initial release"  2017-03-15 RCSB 
# 
